circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000147050:+:X:44961283:44974715
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000147050:+:X:44961283:44974715 | ENSG00000147050 | ENST00000674739 | + | X | 44961284 | 44974715 | 159 | GCUGUUCGCUGCUAUGAAUCUCUAAUCUUAAAAGCUGAAGGAAAAGUGGAGUCUGAUUUCUUUUGUCAAUUAGGUCACUUCAACCUCUUAUUGGAAGAUUAUCCAAAAGCAUUAUCUGCAUACCAGAGGUACUACAGUUUACAGUCUGACUACUGGAAGGCUGUUCGCUGCUAUGAAUCUCUAAUCUUAAAAGCUGAAGGAAAAGUGGA | circ |
| ENSG00000147050:+:X:44961283:44974715 | ENSG00000147050 | ENST00000674739 | + | X | 44961284 | 44974715 | 22 | ACUACUGGAAGGCUGUUCGCUG | bsj |
| ENSG00000147050:+:X:44961283:44974715 | ENSG00000147050 | ENST00000674739 | + | X | 44961084 | 44961293 | 210 | AACUAGUGGCUCUUUUAAUAAAUACAUAGGGAAGCUGUUCCUUCUAUAGAAUGUUGUAUUGAAUAUGUCUAAGAUAGAAGUGAAAUUUUCAAUAUUGACUUCUUAGGUGAUCGAAUGGAGGCUAUAUGCAUUAUCUUGGGGAGGAAAUGUAUUUUAGGGCUUUAUUUUUUGCUUACAUAUUUGUAUUUUUUUAUUUCUAGGCUGUUCGCU | ie_up |
| ENSG00000147050:+:X:44961283:44974715 | ENSG00000147050 | ENST00000674739 | + | X | 44974706 | 44974915 | 210 | CUACUGGAAGGUUAGUGUACAUUUGCAUGCUGAUUUCAUGUUUGUGUUUUGGGCAGAUUAUUGCCAAUUAUACUCAAAAUUAAUUGAGCUCUUGCUUUUUUUUGUUAAUUACUUAAAAUAUUGCUUCUAGGGGAAAGGUAUUGGAAAAGGGUUGAGAGUAUUUAUGUUUGUGCUGUCUUGUAUGACUCUCCUUGUAUUUUAUUAAGAAUU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| MATR3 | 2 | 739 | 0.01886792 | 0.001072411 | 4.137006 | AAUCUU,AUCUUA | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| AGO1 | 1 | 548 | 0.01257862 | 0.000795613 | 3.982763 | GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| HNRNPM | 2 | 999 | 0.01886792 | 0.001449204 | 3.702603 | AAGGAA,GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| RBM6 | 2 | 1054 | 0.01886792 | 0.001528910 | 3.625360 | AUCCAA,UAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| EIF4B | 1 | 1179 | 0.01257862 | 0.001710061 | 2.878854 | UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| SSB | 1 | 1260 | 0.01257862 | 0.001827446 | 2.783072 | GCUGUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| ZNF638 | 1 | 1773 | 0.01257862 | 0.002570888 | 2.290635 | UGUUCG | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| AGO2 | 1 | 1830 | 0.01257862 | 0.002653492 | 2.245009 | AAAGUG | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| QKI | 2 | 2805 | 0.01886792 | 0.004066466 | 2.214088 | CUAAUC,UCUAAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| RBMX | 3 | 4925 | 0.02515723 | 0.007138779 | 1.817224 | AAGGAA,GAAGGA,GGAAGG | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| KHDRBS1 | 2 | 4064 | 0.01886792 | 0.005891014 | 1.679348 | UAAAAG,UUAAAA | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| YTHDC1 | 3 | 5576 | 0.02515723 | 0.008082210 | 1.638151 | GACUAC,GCAUAC,UACUAC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| TRA2B | 4 | 7329 | 0.03144654 | 0.010622665 | 1.565756 | AAGGAA,AGGAAA,GAAGGA,GGAAGG | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| RBM4 | 1 | 3065 | 0.01257862 | 0.004443259 | 1.501283 | CCUCUU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| ZRANB2 | 1 | 3173 | 0.01257862 | 0.004599773 | 1.451339 | AGGUAC | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| HNRNPC | 1 | 3471 | 0.01257862 | 0.005031636 | 1.321874 | GCAUAC | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPDL | 4 | 8759 | 0.03144654 | 0.012695027 | 1.308638 | ACCAGA,AUACCA,AUUAGG,UCUGAC | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
| HNRNPLL | 1 | 3534 | 0.01257862 | 0.005122936 | 1.295930 | GCAUAC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| SRSF3 | 8 | 16536 | 0.05660377 | 0.023965486 | 1.239940 | ACUACA,ACUUCA,CACUUC,CCUCUU,CUACAG,CUUCAA,UGUCAA,UUCAAC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| SRSF4 | 1 | 3740 | 0.01257862 | 0.005421472 | 1.214217 | GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| DAZAP1 | 2 | 5964 | 0.01886792 | 0.008644502 | 1.126081 | AGGAAA,AGUUUA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| SAMD4A | 1 | 3992 | 0.01257862 | 0.005786671 | 1.120168 | CUGGAA | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| LIN28A | 1 | 4315 | 0.01257862 | 0.006254764 | 1.007946 | UGGAGU | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBMX | 1 | 34 | 0.09090909 | 0.002292376 | 5.309509 | GGAAGG | AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA |
| TRA2B | 1 | 51 | 0.09090909 | 0.003405816 | 4.738352 | GGAAGG | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| HNRNPH3 | 1 | 61 | 0.09090909 | 0.004060781 | 4.484596 | GGAAGG | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.005305214 | 4.098942 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| SRSF7 | 2 | 128 | 0.13636364 | 0.008449044 | 4.012527 | GAAGGC,GGAAGG | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF9 | 2 | 134 | 0.13636364 | 0.008842023 | 3.946939 | GAAGGC,GGAAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| HNRNPF | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.007859576 | 3.531901 | GGAAGG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF2 | 3 | 479 | 0.18181818 | 0.031438302 | 2.531901 | AGGCUG,GAAGGC,GGAAGG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 2 | 625 | 0.13636364 | 0.041000786 | 1.733736 | GAAGGC,GGAAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPA1L2 | 3 | 188 | 0.009523810 | 0.0009522370 | 3.322146 | AUAGGG,UAGGGA,UUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| SNRPB2 | 4 | 288 | 0.011904762 | 0.0014560661 | 3.031391 | GUAUUG,UAUUGC | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| RBFOX2 | 1 | 124 | 0.004761905 | 0.0006297864 | 2.918604 | UGCAUG | UGACUG,UGCAUG |
| RBFOX1 | 2 | 287 | 0.007142857 | 0.0014510278 | 2.299426 | GCAUGC,UGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| ELAVL3 | 19 | 1928 | 0.047619048 | 0.0097188634 | 2.292679 | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| ZFP36L2 | 7 | 774 | 0.019047619 | 0.0039046755 | 2.286336 | AUUUAU,UAUUUA,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| CPEB4 | 6 | 691 | 0.016666667 | 0.0034864974 | 2.257115 | UUUUUU | UUUUUU |
| DDX19B | 6 | 691 | 0.016666667 | 0.0034864974 | 2.257115 | UUUUUU | UUUUUU |
| EIF4A3 | 6 | 691 | 0.016666667 | 0.0034864974 | 2.257115 | UUUUUU | UUUUUU |
| RBM41 | 4 | 502 | 0.011904762 | 0.0025342604 | 2.231902 | AUACAU,UACAUU,UUACAU,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| SSB | 4 | 505 | 0.011904762 | 0.0025493753 | 2.223323 | GCUGUU,UGCUGU,UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| MATR3 | 1 | 216 | 0.004761905 | 0.0010933091 | 2.122837 | AUCUUG | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| ELAVL4 | 25 | 2916 | 0.061904762 | 0.0146966949 | 2.074559 | AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| EIF4B | 1 | 226 | 0.004761905 | 0.0011436921 | 2.057840 | UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| HNRNPCL1 | 11 | 1381 | 0.028571429 | 0.0069629182 | 2.036809 | AUUUUU,CUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| TUT1 | 1 | 230 | 0.004761905 | 0.0011638452 | 2.032640 | AAAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| A1CF | 4 | 598 | 0.011904762 | 0.0030179363 | 1.979904 | UAAUUA,UAAUUG,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| CELF1 | 8 | 1097 | 0.021428571 | 0.0055320435 | 1.953651 | CUGUCU,GUUUGU,UGUGUU,UGUUGU,UGUUUG,UUGUGU | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| ESRP2 | 5 | 731 | 0.014285714 | 0.0036880290 | 1.953651 | GGGAAA,GGGAAG,GGGGAA,GGGGAG,UGGGGA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| RALY | 8 | 1117 | 0.021428571 | 0.0056328094 | 1.927609 | UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| PUM2 | 5 | 764 | 0.014285714 | 0.0038542926 | 1.890035 | GUACAU,UAAAUA,UACAUA,UGUACA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| KHDRBS2 | 7 | 1051 | 0.019047619 | 0.0053002821 | 1.845470 | AAUAAA,UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| RBMS3 | 3 | 562 | 0.009523810 | 0.0028365578 | 1.747397 | CUAUAG,CUAUAU,UAUAGA | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| ELAVL1 | 22 | 3309 | 0.054761905 | 0.0166767432 | 1.715335 | AUUUAU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| CSTF2 | 6 | 1022 | 0.016666667 | 0.0051541717 | 1.693153 | GUGUUU,GUUUUG,UGUGUU,UGUUUG,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| CPEB2 | 9 | 1487 | 0.023809524 | 0.0074969770 | 1.667158 | AUUUUU,CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| SYNCRIP | 6 | 1041 | 0.016666667 | 0.0052498992 | 1.666604 | UUUUUU | AAAAAA,UUUUUU |
| U2AF2 | 6 | 1071 | 0.016666667 | 0.0054010480 | 1.625654 | UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| HNRNPC | 12 | 2006 | 0.030952381 | 0.0101118501 | 1.614003 | AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| ELAVL2 | 60 | 9826 | 0.145238095 | 0.0495112858 | 1.552591 | AAUUUU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUC,AUUUUU,CUUUUA,CUUUUU,GUAUUG,UAUACU,UAUGUU,UAUUGA,UAUUUA,UAUUUG,UAUUUU,UCUUUU,UGAUUU,UGUAUU,UUAAUU,UUACUU,UUAUAC,UUAUGU,UUAUUG,UUAUUU,UUGUAU,UUUAAU,UUUAUG,UUUAUU,UUUCAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPU | 6 | 1136 | 0.016666667 | 0.0057285369 | 1.540727 | UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| HNRNPD | 8 | 1488 | 0.021428571 | 0.0075020153 | 1.514186 | AUUUAU,UAUUUA,UUAGGG,UUAUUU,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| TIA1 | 30 | 5140 | 0.073809524 | 0.0259018541 | 1.510752 | AUUUUC,AUUUUU,CUCCUU,CUUUUA,CUUUUU,GUUUUG,UAUUUU,UCUCCU,UUAUUU,UUUAUU,UUUUAU,UUUUGG,UUUUGU,UUUUUA,UUUUUG,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PUM1 | 12 | 2172 | 0.030952381 | 0.0109482064 | 1.499356 | AAUAUU,AAUGUU,AGAAUU,CUUGUA,GUACAU,UAAAUA,UACAUA,UGUACA,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| TARDBP | 5 | 1034 | 0.014285714 | 0.0052146312 | 1.453936 | GAAUGG,GAAUGU,GUUUUG,UUGUGC,UUUUGC | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| PPIE | 52 | 9262 | 0.126190476 | 0.0466696896 | 1.435045 | AAAAUA,AAAAUU,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAUU,AAUUAA,AAUUAU,AAUUUU,AUAAAU,AUAUUU,AUUAAU,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAUAA,UAAUUA,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUUA,UUAUUU,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| TIAL1 | 31 | 5597 | 0.076190476 | 0.0282043531 | 1.433693 | AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUA,CUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUG,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| RBM4 | 5 | 1094 | 0.014285714 | 0.0055169287 | 1.372636 | CCUUCU,CUCUUU,CUUCUU,UCCUUC,UUCCUU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| KHDRBS3 | 8 | 1646 | 0.021428571 | 0.0082980653 | 1.368689 | AAUAAA,UAAAUA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| NOVA1 | 6 | 1428 | 0.016666667 | 0.0071997179 | 1.210953 | UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| NOVA2 | 6 | 1434 | 0.016666667 | 0.0072299476 | 1.204908 | UUUUUU | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| KHSRP | 27 | 5764 | 0.066666667 | 0.0290457477 | 1.198639 | AUAUUU,AUGUAU,AUUAUU,AUUUAU,AUUUUA,CUCCUU,UAUUUA,UAUUUU,UCCUUC,UGCAUG,UGCUUC,UGUAUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUU | ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU |
| ZNF638 | 2 | 646 | 0.007142857 | 0.0032597743 | 1.131729 | UGUUCG,UGUUGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| KHDRBS1 | 8 | 1945 | 0.021428571 | 0.0098045143 | 1.128018 | CAAAAU,UUAAAA,UUUUUU | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| MBNL1 | 14 | 3258 | 0.035714286 | 0.0164197904 | 1.121066 | CUUGCU,GCUUUU,GGCUUU,GUGCUG,UGCUGU,UGCUUC,UGCUUU,UUCGCU,UUGCCA,UUGCUU,UUGUGC,UUUGCU | ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU |
| HNRNPA1 | 28 | 6340 | 0.069047619 | 0.0319478033 | 1.111875 | AGAUUA,AGGGUU,AGUGAA,AUAGAA,AUAGGG,AUUUAU,GAAGGU,GAGGAA,GGAAGG,GGAGGA,GGGCAG,GGUUAG,UAGGCU,UAGGGA,UAGGGC,UUAGGG,UUAUUU,UUUAUU,UUUUUU | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| CELF2 | 3 | 881 | 0.009523810 | 0.0044437727 | 1.099754 | UAUGUU,UGUUGU,UUGUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| ZCRB1 | 2 | 666 | 0.007142857 | 0.0033605401 | 1.087808 | AAUUAA,ACUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| CELF5 | 2 | 669 | 0.007142857 | 0.0033756550 | 1.081334 | GUGUUU,UGUGUU | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.