ENSG00000113163:-:5:75411010:75426478

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000113163:-:5:75411010:75426478 ENSG00000113163 ENST00000644072 - 5 75411011 75426478 582 ACUGAAUCUGGAUAUGGAUCUGAAUCCAGCUUGCGUCGACAUGGCUCAAUGGUGUCCCUGGUGUCUGGAGCAAGUGGCUACUCUGCAACAUCCACCUCUUCAUUCAAGAAAGGCCACAGUUUACGUGAGAAGUUGGCUGAAAUGGAAACAUUUAGAGACAUCUUAUGUAGACAAGUUGACACGCUACAGAAGUACUUUGAUGCCUGUGCUGAUGCUGUCUCUAAGGAUGAACUUCAAAGGGAUAAAGUGGUAGAAGAUGAUGAAGAUGACUUUCCUACAACGCGUUCUGAUGGUGACUUCUUGCAUAGUACCAACGGCAAUAAAGAAAAGUUAUUUCCACAUGUGACACCAAAAGGAAUUAAUGGUAUAGACUUUAAAGGGGAAGCGAUAACUUUUAAAGCAACUACUGCUGGAAUCCUUGCAACACUUUCUCAUUGUAUUGAACUAAUGGUUAAACGUGAGGACAGCUGGCAGAAGAGACUGGAUAAGGAAACUGAGAAGAAAAGAAGAACAGAGGAAGCAUAUAAAAAUGCAAUGACAGAACUUAAGAAAAAAUCCCACUUUGGAGGACCAGAUUAUGAAACUGAAUCUGGAUAUGGAUCUGAAUCCAGCUUGCGUCGACAUGGCUCAAU circ
ENSG00000113163:-:5:75411010:75426478 ENSG00000113163 ENST00000644072 - 5 75411011 75426478 22 CAGAUUAUGAAACUGAAUCUGG bsj
ENSG00000113163:-:5:75411010:75426478 ENSG00000113163 ENST00000644072 - 5 75426469 75426678 210 AGUAGGUAUUCAAUAAAUUUCUAAAUUAAAUGGCAUUUAGGAAUUGAAAGGCAUUGCUUAUGUCAGUGGAUUGACUAUAUAUCUUAUGUGCACCCAGACUGCCAAUUGUUAUAAUAACCUUGUUAAUUCAUAGGAAACCUUUUGUUUUCUCAAGUAUUUUUUAUUUAAAUUCUUUUCACAUAGUUUACUUUUUUUUUUAGACUGAAUCUG ie_up
ENSG00000113163:-:5:75411010:75426478 ENSG00000113163 ENST00000644072 - 5 75410811 75411020 210 AGAUUAUGAAGUAUGAAUUUAUAUUUUGAUCUUAGAGAAACACAUAGAUCAUGUCUAUCACAAAAGUGAUUUUUUAAUAAUACUCUUGUAACCUUUAAAUAUUCUAAAUAUAUAAUUUUUUCCUCAGUGUUUAUGUUAAUUCAGUGUAUAUUUCAUGAUAUAUAAAUGCCAGGCAUGCUCAAAUAUAUAUUUCUUAUUGCCUACAAAGUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.003436426 0.0002275250 3.916812 AGGGAU AGGGAU
RBM42 2 407 0.005154639 0.0005912752 3.123970 AACUAA,AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
CNOT4 1 314 0.003436426 0.0004564992 2.912225 GACAGA GACAGA
PABPN1 5 1222 0.010309278 0.0017723764 2.540186 AAAAGA,AGAAGA AAAAGA,AGAAGA
FXR1 1 411 0.003436426 0.0005970720 2.524932 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
MATR3 2 739 0.005154639 0.0010724109 2.265014 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM6 3 1054 0.006872852 0.0015289102 2.168405 AAUCCA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
G3BP2 4 1644 0.008591065 0.0023839405 1.849489 AGGAUG,GGAUAA,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPM 2 999 0.005154639 0.0014492040 1.830611 AAGGAA AAGGAA,GAAGGA,GGGGGG
SRSF11 1 688 0.003436426 0.0009985015 1.783072 AAGAAG AAGAAG
TRA2A 18 6871 0.032646048 0.0099589296 1.712846 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
YBX2 3 1480 0.006872852 0.0021462711 1.679077 AACAUC,ACAACG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SRSF4 9 3740 0.017182131 0.0054214720 1.664152 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ZCRB1 3 1605 0.006872852 0.0023274215 1.562176 AAUUAA,ACUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 1 813 0.003436426 0.0011796520 1.542548 AAAAAA AAAAAA
RBM28 1 822 0.003436426 0.0011926949 1.526684 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SNRNP70 2 1237 0.005154639 0.0017941145 1.522599 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRP14 1 847 0.003436426 0.0012289250 1.483512 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBMS3 2 1283 0.005154639 0.0018607779 1.469966 CAUAUA,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TRA2B 16 7329 0.029209622 0.0106226650 1.459298 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGA,AGGAAA,AGGAAG,GAAGAA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SART3 5 2634 0.010309278 0.0038186524 1.432808 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
AGO2 3 1830 0.006872852 0.0026534924 1.373017 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
KHDRBS2 3 1858 0.006872852 0.0026940701 1.351122 AAUAAA,AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
PABPC5 4 2400 0.008591065 0.0034795387 1.303941 AGAAAA,AGAAAG AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
KHDRBS3 6 3429 0.012027491 0.0049707696 1.274795 AAUAAA,AUAAAA,AUAAAG,GAUAAA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SNRPB2 1 991 0.003436426 0.0014376103 1.257236 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NONO 2 1498 0.005154639 0.0021723567 1.246610 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM3 3 2152 0.006872852 0.0031201361 1.139300 GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF5 15 8869 0.027491409 0.0128544391 1.096714 AAGAAG,AGAAGA,AGGAAG,AUAAAG,GAAGAA,GAGGAA,UAAAGG,UACAGA,UGCAUA,UGCGUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SRSF10 24 13860 0.042955326 0.0200874160 1.096545 AAAAGA,AAAGAA,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGAGA,AAGGAA,AAGGGA,AAGGGG,AGACAA,AGAGAC,AGAGGA,GAGAAG,GAGACA,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
FXR2 5 3434 0.010309278 0.0049780156 1.050301 AGACAA,GACAAG,GACAGA,GGACAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM46 1 14 0.09090909 0.0009824469 6.531901 AUGAAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
RBM3 1 20 0.09090909 0.0013754257 6.046474 GAAACU AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
SRSF9 1 134 0.09090909 0.0088420225 3.361976 AUGAAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 9 221 0.023809524 0.0011185006 4.411901 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 5 217 0.014285714 0.0010983474 3.701167 GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 13 562 0.033333333 0.0028365578 3.554752 AAUAUA,AUAUAU,CUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
CPEB4 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
DDX19B 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
EIF4A3 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
ACO1 3 325 0.009523810 0.0016424829 2.535660 CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
PUM2 8 764 0.021428571 0.0038542926 2.474998 GUAUAU,UAAAUA,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
U2AF2 10 1071 0.026190476 0.0054010480 2.277731 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
KHDRBS2 9 1051 0.023809524 0.0053002821 2.167398 AAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 12 1381 0.030952381 0.0069629182 2.152286 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 12 1434 0.030952381 0.0072299476 2.097993 AGAUCA,AGGCAU,UAGAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
PPIE 82 9262 0.197619048 0.0466696896 2.082164 AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUUAA,AUUUAU,AUUUUU,UAAAUA,UAAAUU,UAAUAA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RALY 9 1117 0.023809524 0.0056328094 2.079612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SYNCRIP 8 1041 0.021428571 0.0052498992 2.029174 UUUUUU AAAAAA,UUUUUU
HNRNPC 16 2006 0.040476190 0.0101118501 2.001027 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS3 12 1646 0.030952381 0.0082980653 1.899203 AAUAAA,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ELAVL3 14 1928 0.035714286 0.0097188634 1.877642 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
KHDRBS1 14 1945 0.035714286 0.0098045143 1.864983 AUUUAA,CUAAAU,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AUUCAU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
TIAL1 38 5597 0.092857143 0.0282043531 1.719095 AAAUUU,AAUUUU,AUUUUG,AUUUUU,CUUUUC,CUUUUG,CUUUUU,GUUUUC,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGC AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ELAVL2 66 9826 0.159523810 0.0495112858 1.687942 AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUAG,AUUUAU,AUUUUG,AUUUUU,CUUUAA,CUUUUU,GAUUUU,GUUUUC,UAAUUU,UACUUU,UAUAUA,UAUAUU,UAUGUU,UAUUUA,UAUUUU,UCUUAU,UCUUUU,UGAUUU,UUAAUU,UUACUU,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCUUU,UUUAAU,UUUACU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ELAVL4 18 2916 0.045238095 0.0146966949 1.622046 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AAUUGU,CUUGUA,GAAUUG,GUAUAU,UAAAUA,UAUAUA,UGUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
DAZAP1 17 2878 0.042857143 0.0145052398 1.562962 AAUUUA,AGGAAA,AGUAGG,AGUAUG,AGUUUA,UAGGAA,UAGGUA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AAUUUA,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL1 19 3309 0.047619048 0.0166767432 1.513701 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AUCAUG,AUGAAG,AUGAAU,AUGAUA,GAUCAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
TIA1 27 5140 0.066666667 0.0259018541 1.363910 AUUUUG,AUUUUU,CUUUUC,CUUUUG,CUUUUU,GUUUUC,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 8 1711 0.021428571 0.0086255542 1.312847 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGUAGG,UAGGAA,UAGGUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAACAC,AAAUUC,AACACA,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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