ENSG00000019995:+:10:124942456:124943307

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000019995:+:10:124942456:124943307 ENSG00000019995 MSTRG.4787.1 + 10 124942457 124943307 851 CUUCCUGCCUGACACAGCUCACUUCAAGAAGUGCACAAUGUCAGAACGUGGAAUUAAGUGGGCUUGUGAAUAUUGUACGUAUGAAAACUGGCCAUCUGCAAUCAAGUGUACUAUGUGUCGUGCCCAAAGACCUAGUGGAACAAUUAUUACAGAAGAUCCAUUUAAAAGUGGUUCAAGUGAUGUUGGUAGAGAUUGGGAUCCUUCCAGCACCGAAGGAGGAAGUAGUCCUUUGAUAUGUCCAGACUCUAGUGCAAGACCAAGGGUGAAAUCUUCGUAUAGCAUGGAAAAUGCAAAUAAGUGGUCAUGCCACAUGUGUACAUAUUUGAACUGGCCAAGAGCAAUCAGAUGUACCCAGUGCUUAUCCCAACGUAGGACCAGGAGUCCUACAGAAUCUCCUCAGUCCUCAGGAUCUGGCUCAAGACCAGUUGCUUUUUCUGUUGAUCCUUGUGAGGAAUACAAUGAUAGAAAUAAACUGAACACUAGGACACAGCACUGGACUUGCUCUGUUUGCACAUAUGAAAACUGGGCCAAGGCUAAAAGAUGUGUUGUUUGUGAUCAUCCCAGACCUAAUAACAUUGAAGCAAUAGAAUUGGCAGAGACUGAAGAGGCUUCUUCAAUAAUAAAUGAGCAAGACAGAGCUCGAUGGAGGGGAAGUUGCAGUAGUGGUAAUAGCCAAAGGAGAUCACCUCCUGCUACGAAGCGGGACUCUGAAGUGAAAAUGGAUUUUCAGAGGAUUGAAUUGGCUGGUGCUGUGGGAAGCAAGGAGGAACUUGAAGUAGACUUUAAAAAACUAAAGCAAAUUAAAAACAGGAUGAAAAAGACUGAUUGGCUCUUCCUCAAUGCUUGUGUGGCUUCCUGCCUGACACAGCUCACUUCAAGAAGUGCACAAUGUCAGAACGUG circ
ENSG00000019995:+:10:124942456:124943307 ENSG00000019995 MSTRG.4787.1 + 10 124942457 124943307 22 UGCUUGUGUGGCUUCCUGCCUG bsj
ENSG00000019995:+:10:124942456:124943307 ENSG00000019995 MSTRG.4787.1 + 10 124942257 124942466 210 CUAAGAUUUUUUCUUUGAGAAUUUAUCUCCAGUGUUUCUAUGGAAAUUAAAAAAGAAAAUUAGGAUAAUUCAAUGUCGAAAUGUUGCAUGCAUCUUUUGAGAAAUUUAUAUUUUGUAGGUUGAAGGACUUGCUUUUUGGGCAGCGUAUUUUUGGAGGUGGAAUGUAGUUAUUUUAAUAACCAUGUCCUAAUUAUUUAUAGCUUCCUGCCU ie_up
ENSG00000019995:+:10:124942456:124943307 ENSG00000019995 MSTRG.4787.1 + 10 124943298 124943507 210 GCUUGUGUGGGUAAGUUUCUGUAUUCUGCAUUUUUUGCGUGGGAUGGGAAAAGGUAGUAAAAAUGAUAUGAAAAGAGCUGGGUGCGCUGACACACGUUUGUGGUCUUAGCCACUUGCUUGAAACCAGGAGUUUGAGGCUGUAGUAUGCCAUGAUCGGUCUGUGAAUAGCACUUGCACUCCAGCUUGGGUAACAUAGUGAGACUGUGUCUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 3 489 0.004700353 0.0007101099 2.726655 CAAGAC ACAAGA,CAAGAC
CNOT4 1 314 0.002350176 0.0004564992 2.364085 GACAGA GACAGA
RBM42 1 407 0.002350176 0.0005912752 1.990867 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBM28 3 822 0.004700353 0.0011926949 1.978544 AGUAGA,AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC3 5 1234 0.007050529 0.0017897669 1.977960 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 5 1237 0.007050529 0.0017941145 1.974460 AAUCAA,AUCAAG,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF2 8 1886 0.010575793 0.0027346479 1.951339 AUGUGU,GUUGUU,UAUGUG,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ERI1 2 632 0.003525264 0.0009173461 1.942193 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA3 8 2140 0.010575793 0.0031027457 1.769149 AAGGAG,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NONO 5 1498 0.007050529 0.0021723567 1.698470 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
CELF1 8 2391 0.010575793 0.0034664959 1.609216 GUGUUG,GUUUGU,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF5 4 1415 0.005875441 0.0020520728 1.517615 GUGUGG,GUGUUG,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 5 1782 0.007050529 0.0025839306 1.448164 AAAGAC,AAGACA,AUAGCA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF6 9 2997 0.011750881 0.0043447134 1.435436 GUGAGG,GUGAUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
AGO2 5 1830 0.007050529 0.0026534924 1.409839 AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 3 1222 0.004700353 0.0017723764 1.407084 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM3 6 2152 0.008225617 0.0031201361 1.398515 AAAACU,AAACUA,AAGACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ZCRB1 4 1605 0.005875441 0.0023274215 1.335965 AAUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CSTF2 5 1967 0.007050529 0.0028520334 1.305741 GUGUUG,UGUGUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
G3BP2 4 1644 0.005875441 0.0023839405 1.301349 AGGAUG,AGGAUU,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRPB2 2 991 0.003525264 0.0014376103 1.294059 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
KHDRBS1 11 4064 0.014101058 0.0058910141 1.259215 AUUUAA,CUAAAA,GAAAAC,UAAAAA,UAAAAG,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SRSF11 1 688 0.002350176 0.0009985015 1.234932 AAGAAG AAGAAG
ZNF638 4 1773 0.005875441 0.0025708878 1.192430 GUUGGU,GUUGUU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 4 1782 0.005875441 0.0025839306 1.185130 GUGUGG,GUGUUG,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MATR3 1 739 0.002350176 0.0010724109 1.131911 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SART3 6 2634 0.008225617 0.0038186524 1.107060 AAAAAA,AAAAAC,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
KHSRP 2 35 0.13636364 0.002357873 5.853829 GCUUCC,GGCUUC ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
FMR1 1 117 0.09090909 0.007728583 3.556149 GUGGCU AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM8A 2 84 0.007142857 0.0004282547 4.059960 GUGCGC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
AGO1 4 283 0.011904762 0.0014308746 3.056570 AGGUAG,GGUAGU,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA AAAAGA,AGAAGA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM28 3 340 0.009523810 0.0017180572 2.470761 UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAA,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,GGAUAA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAAAAA,AAUUUA,AUUUAU,UAUUUA,UUAGGA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPCL1 9 1381 0.023809524 0.0069629182 1.773775 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGG,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
DAZAP1 16 2878 0.040476190 0.0145052398 1.480499 AAAAAA,AAUUUA,AGGAUA,AGGUAG,AGGUUG,AGUAAA,AGUAUG,AGUUUG,UAGGAU,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGUAG,AGGUGG,UAGUAA,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUGG,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GAAUGU,GUGAAU,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ELAVL4 13 2916 0.033333333 0.0146966949 1.181474 AAAAAA,AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUGUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
KHSRP 26 5764 0.064285714 0.0290457477 1.146171 AGCUUC,AUAUUU,AUUAUU,AUUUAU,AUUUUA,CAGCUU,CUGCCU,CUGUAU,CUGUGU,GCUUCC,UAGGUU,UAGUAU,UAUAUU,UAUUUA,UAUUUU,UGCAUG,UGUGUG,UUAUUU,UUGUGU,UUUAUA ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUCUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PPIE 41 9262 0.100000000 0.0466696896 1.099442 AAAAAA,AAAAAU,AAAAUU,AAAUUA,AAAUUU,AAUUAA,AAUUAU,AAUUUA,AUAAUU,AUAUUU,AUUAAA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAUAA,UAAUUA,UAUAUU,UAUUUA,UAUUUU,UUAAAA,UUAAUA,UUAUAU,UUAUUU,UUUAAU,UUUAUA,UUUUAA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAG,CGGUCU,GGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUG,AUUUUU,CUUUUG,CUUUUU,UAUUUU,UUAUUU,UUUUCU,UUUUGG,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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