ENSG00000198879:-:10:7276891:7285954

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198879:-:10:7276891:7285954 ENSG00000198879 ENST00000397167 - 10 7276892 7285954 434 CAAUCAAAGAGAAGUACACAGACUGGACAGAAUUUCUCAUACGUGACUUGACUGGUUCGAGGACAGCACCCGCCAACCUCCUGGAAGGUCCUCUGCGAGGGAAAGGCCCUAUAGACCUCAUUACAGUUGGUUCCUUAAUAGAACUUCAGGAUUCCCAGAACCCUUUUCAGUACUGGAUAGUUAGUGUGAUUGAAAAUGUUGGAGGAAGAUUACGCCUUCGCUAUGUGGGAUUGGAGGACACUGAAUCCUAUGACCAGUGGUUGUUUUACUUGGAUUACAGACUUCGACCAGUUGGUUGGUGUCAAGAGAAUAAAUACAGAAUGGACCCACCUUCAGAAAUCUAUCCUUUGAAGAUGGCCUCUGAAUGGAAAUGUACUCUGGAAAAAUCCCUUAUUGAUGCUGCCAAAUUUCCUCUUCCAAUGGAAGUGUUUAAGCAAUCAAAGAGAAGUACACAGACUGGACAGAAUUUCUCAUACGUGACUUG circ
ENSG00000198879:-:10:7276891:7285954 ENSG00000198879 ENST00000397167 - 10 7276892 7285954 22 AAGUGUUUAAGCAAUCAAAGAG bsj
ENSG00000198879:-:10:7276891:7285954 ENSG00000198879 ENST00000397167 - 10 7285945 7286154 210 GUCAAGUUGCUACUUAGAGACACAUUUUCAGUCUCAGUUUUAGUAUUUACUUAAGCAUGGUGAUGAAAGUUAAGAAAAACAUUGAAAUCAAACCUACAUGGAGAAAACUGCUGUGAUUUUAAGUUGAUUGGAUACUUUGCUGCUGUGUUGAAGUGUUUUUUUUGUUUUGUUUUGUUUUUCUUUCUCCUUUGUCUUGCCAGCAAUCAAAGA ie_up
ENSG00000198879:-:10:7276891:7285954 ENSG00000198879 ENST00000397167 - 10 7276692 7276901 210 AGUGUUUAAGGUAAGAUGUUGAUUCUUAGCAAUGUAUCUACCCUUUUUGAGAAUAAAAUCAUCUACAAAGUUUUCCGGCCGGGCGCAGUGGCUCAUGCCUGUAAUCCCAGCACUUUGAGAGGCUGAGGUGGGCGGAUCACGACAUCAGGAGAUCGAGACCAUCCUGGCUAACAUGGUGAAACCCUAUUUCUACUAAAAAUACAAAAAUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 314 0.004608295 0.0004564992 3.335549 GACAGA GACAGA
ZNF638 8 1773 0.020737327 0.0025708878 3.011891 GGUUCG,GGUUGG,GGUUGU,GUUGGU,GUUGUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IGF2BP1 3 831 0.009216590 0.0012057377 2.934317 AGCACC,CACCCG,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ERI1 2 632 0.006912442 0.0009173461 2.913658 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX2 1 452 0.004608295 0.0006564894 2.811389 UGACUG UGACUG,UGCAUG
G3BP2 4 1644 0.011520737 0.0023839405 2.272813 AGGAUU,GGAUAG,GGAUUA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TUT1 1 678 0.004608295 0.0009840095 2.227489 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ENOX1 8 3195 0.020737327 0.0046316558 2.162630 AAUACA,AGGACA,AGUACA,AUACAG,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
EIF4B 2 1179 0.006912442 0.0017100607 2.015148 CUUGGA,GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBMS3 2 1283 0.006912442 0.0018607779 1.893290 CUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM41 2 1318 0.006912442 0.0019115000 1.854490 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
IFIH1 1 904 0.004608295 0.0013115296 1.812983 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
MSI1 5 2770 0.013824885 0.0040157442 1.783528 AGGAAG,AGUUAG,AGUUGG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
TARDBP 4 2654 0.011520737 0.0038476365 1.582189 GAAUGG,GUUGUU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZCRB1 2 1605 0.006912442 0.0023274215 1.570463 GGAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBFOX1 1 1077 0.004608295 0.0015622419 1.560615 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRNP70 1 1237 0.004608295 0.0017941145 1.360961 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF2 2 1886 0.006912442 0.0027346479 1.337840 GUUGUU,UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SSB 1 1260 0.004608295 0.0018274462 1.334404 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 1 1283 0.004608295 0.0018607779 1.308327 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
CSTF2 2 1967 0.006912442 0.0028520334 1.277205 GUGUUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SF1 6 4931 0.016129032 0.0071474739 1.174155 ACAGAC,CACAGA,CACUGA,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
CELF5 1 1415 0.004608295 0.0020520728 1.167151 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
NONO 1 1498 0.004608295 0.0021723567 1.084972 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM24 2 2357 0.006912442 0.0034172229 1.016371 AGUGUG,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP2 1 34 0.09090909 0.002292376 5.309509 GCAAUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC
ZFP36 2 126 0.13636364 0.008318051 4.035070 AAGCAA,UAAGCA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SFPQ 1 153 0.09090909 0.010086455 3.172005 AAGCAA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 ACGACA ACGACA,ACGACG,AUGACA,AUGACG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
SSB 6 505 0.016666667 0.0025493753 2.708750 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GCGGAU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CSTF2 10 1022 0.026190476 0.0051541717 2.345230 GUGUUG,GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACUU,UACAUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUUG,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AAUCAA,AAUCAU,AUCAAA,AUGAAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 AGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP3 8 1348 0.021428571 0.0067966546 1.656639 AAAAAC,AAAACA,AAAAUC,AAAUAC,AAAUCA,AAUACA,CAAUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
QKI 5 904 0.014285714 0.0045596534 1.647577 AAUCAU,AUCUAC,CUAACA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GUGUUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ELAVL1 20 3309 0.050000000 0.0166767432 1.584091 UAUUUA,UGAUUU,UGUUUU,UUGAUU,UUGUUU,UUUAGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
PABPC1 7 1321 0.019047619 0.0066606207 1.515882 AAAAAC,AGAAAA,CAAACC,CUAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,GGAGAA,GGAGAU,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
IGF2BP2 11 2163 0.028571429 0.0109028617 1.389866 AAAAAC,AAAACA,AAAAUC,AAAUAC,AAAUCA,AAUACA,CAAUCA,GAAAAC,GAAAUC,GCAAUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGUGU,AGUGUU,AUCAAA,AUCCCA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AUCAUC,GAGACA,GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUGGCU,GCUAAC,GGCUAA,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,AUUUAC,CUAAAA,GAAAAC,UAAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACAUCA,AUCAUC,CAGCAA,CCAGCA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 CUUUUU,GGAUAC,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 22 5140 0.054761905 0.0259018541 1.080117 AUUUUC,CUCCUU,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UCCUUU,UCUCCU,UUCUCC,UUUUCU,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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