ENSG00000151466:-:4:128888678:128999794

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000151466:-:4:128888678:128999794 ENSG00000151466 ENST00000651532 - 4 128888679 128999794 1385 GAAAAAACUCAGGCUGUGGAACUCUGGCAGACUGUUUCUCAGGAGUUGGACAGACUACACAAGCUUUACCAGGAACAUAUGACUGAGGCCCAGAUUCAUGUAUUUGAAAGUCAAAAACAAAAGGAUCAGCUAUUUGAUUUUCAACAACUGACCAAACAACUUCAUGUUACUAAUGAGAACAUGGAAGUGACUAACCAACAGUUUCUGAAAACAGUAACUGAACAAAGUGUGAUAAUCGAACAACUCCGAAAAAAACUUAGGCAAGCCAAAUUAGAGCUGAGAGUUGCUGUAGCAAAAGUGGAAGAGUUAACUAAUGUGACUGAAGAUCUGCAGGGACAGAUGAAAAAGAAGGAGAAGGAUGUGGUGUCUGCCCAUGGAAGAGAGGAAGCAUCAGAUAGGCGUUUACAGCAGUUACAGUCUAGUAUAAAACAAUUAGAAAUAAGAUUAUGUGUGACAAUCCAAGAAGCCAACCAAUUAAGAACCGAAAAUACACAUCUGGAAAAACAGACCAGAGAGCUACAAGCAAAGUGCAAUGAAUUAGAAAAUGAGAGAUAUGAGGCUAUUGUAAGAGCCAGAAAUAGCAUGCAACUCUUAGAAGAAGCUAACCUUCAAAAAAGUCAGGCUCUACUUGAGGAGAAGCAAAAAGAAGAAGACAUAGAGAAAAUGAAAGAGACAGUUUCUCGGUUUGUACAAGAUGCUACCAUAAGAACCAAGAAAGAAGUUGCAAACACCAAAAAACAAUGUAAUAUACAAAUUUCUCGAUUAACAGAAGAACUUUCAGCCCUUCAAAUGGAGUGUGCUGAAAAACAAGGCCAAAUUGAACGAGUCAUUAAGGAAAAAAAAGCAGUGGAAGAAGAACUAGAAAAGAUUUACCGUGAAGGCAGAGGAAAUGAGAGUGAUUACAGAAAACUGGAAGAAAUGCACCAAAGAUUCCUGGUUUCAGAGCGUUCAAAAGAUGAUCUUCAGCUAAGACUUACGAGAGCAGAAAAUAGAAUAAAACAACUUGAAACUGAAUCAGUACAAUGGAACAUGAAUUUUCAAUAAAGGAACGUGGAUUUGAAGUUCAAUUGAGAGAGAUGGAAGACAGUAAUAGAAAUUCCAUUGUUGAACUGAGGCAUCUCCUAGCGACUCAACAGAAGGCAGCCAAUAGGUGGAAAGAAGAAACGAAGAAACUUACUGAAAGUGCAGAAAUUAGAAUCAAUAAUCUAAAGAGUGAGCUGAGUCGACAGAAACUUCAUACCCAAGAGCUGCUUUCUCAGCUGGAAAUGGCAAAUGAAAAGGUAGCUGAGAAUGAAAAGCUAAUUCUAGAGCAUCAAGAAAAAGCCAACAGACUUCAAAGGCGUCUAAGUCAGGCAGAAGAGAGAGCUGCUUCAGCUUCCCAGCAGGAAAAAACUCAGGCUGUGGAACUCUGGCAGACUGUUUCUCAGGAGUUGGA circ
ENSG00000151466:-:4:128888678:128999794 ENSG00000151466 ENST00000651532 - 4 128888679 128999794 22 CUUCCCAGCAGGAAAAAACUCA bsj
ENSG00000151466:-:4:128888678:128999794 ENSG00000151466 ENST00000651532 - 4 128999785 128999994 210 CUUUAUGUCUUCAAGUUUACUCUCUAAAUUAUUAAUAAUAAAACUUCAUAUCAAAAAUAUAACUAUAAUACCAUCUUUACACAGUUCUAUUUUAUUUUAUGACUUUAUAAGAACUUAUUCUAUAAAAGAAAAUGAUCCAUUUGUACUAUACAAUAAAUAGCCUGCUGAUAAUUUAAUGAGUUAUCAAACUUUUUUAAUAGGAAAAAACUC ie_up
ENSG00000151466:-:4:128888678:128999794 ENSG00000151466 ENST00000651532 - 4 128888479 128888688 210 UUCCCAGCAGGUAGGGAGCAUCCUCUUAUCCCUAGAUAAUAAACAGUUCAAAGAUAAGUUUUUUAGAAGUUCCCAGGGAACUUAAUAGUUUAUUUUUACUAGAUUAACAUAUUUUAAAAUUAAUCCCUUUAAUAUGUGAGGUUGAAAAAGUAAACAUUGGAAACAAAAAUAAGCUAUGCGUGGUGGCUCGCAACUGUAAUGCCAGCAAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 8 688 0.006498195 0.0009985015 2.702202 AAGAAG AAGAAG
PABPC3 15 1234 0.011552347 0.0017897669 2.690342 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
CNOT4 3 314 0.002888087 0.0004564992 2.661430 GACAGA GACAGA
SART3 29 2634 0.021660650 0.0038186524 2.503941 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC4 13 1251 0.010108303 0.0018144033 2.477974 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGHMBP2 8 813 0.006498195 0.0011796520 2.461678 AAAAAA AAAAAA
PABPN1 11 1222 0.008664260 0.0017723764 2.289391 AAAAGA,AGAAGA AAAAGA,AGAAGA
PABPC1 38 4443 0.028158845 0.0064402624 2.128397 AAAAAA,AAAAAC,ACAAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CGAACA,CUAACC,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPC5 20 2400 0.015162455 0.0034795387 2.123535 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SRSF4 31 3740 0.023104693 0.0054214720 2.091429 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
AGO2 14 1830 0.010830325 0.0026534924 2.029112 AAAAAA,AAAGUG,AAGUGC AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2B 51 7329 0.037545126 0.0106226650 1.821480 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
YBX2 9 1480 0.007220217 0.0021462711 1.750210 AACAAC,ACAACU,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBFOX2 2 452 0.002166065 0.0006564894 1.722233 UGACUG UGACUG,UGCAUG
TRA2A 44 6871 0.032490975 0.0099589296 1.705976 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ERI1 3 632 0.002888087 0.0009173461 1.654576 UUCAGA,UUUCAG UUCAGA,UUUCAG
SYNCRIP 8 1634 0.006498195 0.0023694485 1.455488 AAAAAA AAAAAA,UUUUUU
NONO 7 1498 0.005776173 0.0021723567 1.410853 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBMX 25 4925 0.018772563 0.0071387787 1.394876 AAGAAG,AAGGAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,GAAGGA,UAAGAC,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
RBM3 10 2152 0.007942238 0.0031201361 1.347937 AAAACU,AAACGA,AAGACU,AGACUA,GAAACG,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPM 4 999 0.003610108 0.0014492040 1.316781 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM42 1 407 0.001444043 0.0005912752 1.288212 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SRSF7 69 14481 0.050541516 0.0209873716 1.267947 AAAGGA,AAGAAG,AAGGCG,ACGAGA,ACUAGA,AGAAGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCU,AGGAAG,AUAGAA,CAGAGA,CGAGAG,CUAGAG,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACUAC,GAGAGA,GAGGAA,UAGAGA,UCAACA,UCGAUU,UCUUCA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
IGF2BP3 22 4815 0.016606498 0.0069793662 1.250580 AAAAAC,AAAACA,AAACAC,AAACUC,AAAUAC,AAAUUC,AACUCA,AAUACA,ACAAUC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBM24 10 2357 0.007942238 0.0034172229 1.216721 AGAGUG,AGUGUG,GAGUGA,GAGUGU,GUGUGA,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBFOX1 4 1077 0.003610108 0.0015622419 1.208424 AGCAUG,GCAUGC,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRSF5 40 8869 0.029602888 0.0128544391 1.203471 AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SRSF10 63 13860 0.046209386 0.0200874160 1.201894 AAAAGA,AAAGAA,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGGAA,AAGGAG,ACAAAG,AGAGAA,AGAGAC,AGAGAG,AGAGGA,CAAAGA,GAAAGA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPU 8 1965 0.006498195 0.0028491350 1.189515 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPA0 1 453 0.001444043 0.0006579386 1.134089 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.001444043 0.0007101099 1.024000 ACAAGA ACAAGA,CAAGAC
SNRNP70 4 1237 0.003610108 0.0017941145 1.008770 AAUCAA,AUCAAG,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS1 1 497 0.001444043 0.0007217036 1.000636 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DAZAP1 1 36 0.09090909 0.002423369 5.229338 AGGAAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
TRA2B 1 51 0.09090909 0.003405816 4.738352 AGGAAA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
SRSF9 2 134 0.13636364 0.008842023 3.946939 AGGAAA,GGAAAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
ZFP36 1 126 0.09090909 0.008318051 3.450107 AGGAAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF1 3 625 0.18181818 0.041000786 2.148773 AGCAGG,AGGAAA,GCAGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AAUAAA,AUAAAA,AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
KHDRBS3 13 1646 0.033333333 0.0082980653 2.006119 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PPIE 75 9262 0.180952381 0.0466696896 1.955052 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAUAAA,AAUAAU,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUUU,AUUAAU,AUUAUU,AUUUAA,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUU,UAUAAA,UAUAAU,UAUUAA,UAUUUU,UUAAAA,UUAAUA,UUAUAA,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,ACUUAA,AUUUAA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ELAVL4 17 2916 0.042857143 0.0146966949 1.544044 AAAAAA,UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUAAAA,AUUUAA,CUAAAU,UAAAAC,UAAAAG,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AGAUAA,UAAAUA,UAAUAU,UAGAUA,UGUAAU,UUAAUG,UUGUAC,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAACAA,AAAUAA,AACAAA,AAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAGAAC,AAUAAG,AGGAAA,AUAAGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AGUUUU,AUUUUA,AUUUUU,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAAAAA,AAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZFP36 43 9408 0.104761905 0.0474052801 1.143995 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAAGA,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGUA,AAAUAA,AACAAA,AAGAAA,AAGUAA,AAUAAA,AAUAAG,ACUUUU,AGGAAA,AGUAAA,AUAAAC,AUAAAU,AUAAGC,AUAAGU,AUUUAA,CAAAGA,CCCUUU,UAAACA,UAAAUA,UCCUCU,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AAAAAA,AAUUUA,AGGAAA,AGGUAG,AGGUUG,AGUAAA,AGUUUA,UAGGAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUUAU,AUUAAC,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGGAA,AGGUAG,GAGGUU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUA,AUAUUU,AUUAUU,AUUUAA,AUUUUA,AUUUUU,CUUUAA,CUUUUU,GUUUUU,UAAGUU,UAAUUU,UAUUUU,UCUUAU,UUAUGU,UUAUUU,UUUAAU,UUUACU,UUUAUA,UUUAUG,UUUAUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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