circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000249319:+:7:66127703:66134374
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000249319:+:7:66127703:66134374 | ENSG00000249319 | ENST00000450043 | + | 7 | 66127704 | 66134374 | 231 | GAAGGAUGCCAAUUCUGCGCUUCUCAGUAACUACGAGGUAUUUCAGUUACUAACUGAUCUGAAAGAGCAGCGUAAAGAAAGUGGAAAGAAUAAACACAGCUCUGGGCAACAGAACUUGAACACUAUCACCUAUGAAACGUUAAAAUACAUAUCAAAAACACCAUGCAGGCACCAGAGUCCUGAAAUUGUCAGAGAAUUUCUCACAGCAUUGAAAAGCCACAAGUUGACCAAGAAGGAUGCCAAUUCUGCGCUUCUCAGUAACUACGAGGUAUUUCAGUUAC | circ |
| ENSG00000249319:+:7:66127703:66134374 | ENSG00000249319 | ENST00000450043 | + | 7 | 66127704 | 66134374 | 22 | AAGUUGACCAAGAAGGAUGCCA | bsj |
| ENSG00000249319:+:7:66127703:66134374 | ENSG00000249319 | ENST00000450043 | + | 7 | 66127504 | 66127713 | 210 | UGUUCCCAAGUCUACUCUGAAAUUGCCCACAGCUAGCUAAACCAUGUUGGACUUAGGACAUUUCUCAGUUUCAAUUUUAGGUUGUAGUCCCUAAAUUCAAAAAGUGGACUACUGUAUCUUGACAGGAAUUCUUUUACAGAAUUUGAUACCCAGAAAGGGGUGUGAGCCCAGACUGAUGAUAGCUUACUUUUCUUUUUCAGGAAGGAUGCC | ie_up |
| ENSG00000249319:+:7:66127703:66134374 | ENSG00000249319 | ENST00000450043 | + | 7 | 66134365 | 66134574 | 210 | AGUUGACCAAGUAAGUAAAUCUCUUAAGUAGGAAGAGCGUGACACAUGGUGAAAUGAUAGUUGCUACAUUCGUAGCAACCGUGUAUUGAUAUUCGGCUGGGUUUGGAUUUAAAGAAGGAUUAUAGUAUUGGAGAUGAAACAACUGAAAGUUAGACAUAGGGACUAGAGUAAGGAACAAAUCUUUUUUUUUUUUUUUUUAUAAAUGAAGAA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM42 | 3 | 407 | 0.017316017 | 0.0005912752 | 4.872134 | AACUAC,ACUACG | AACUAA,AACUAC,ACUAAG,ACUACG |
| AGO1 | 1 | 548 | 0.008658009 | 0.0007956130 | 3.443897 | GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBM8A | 1 | 611 | 0.008658009 | 0.0008869128 | 3.287171 | UGCGCU | ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU |
| ERI1 | 1 | 632 | 0.008658009 | 0.0009173461 | 3.238497 | UUUCAG | UUCAGA,UUUCAG |
| TUT1 | 1 | 678 | 0.008658009 | 0.0009840095 | 3.137291 | AAAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| SRSF11 | 1 | 688 | 0.008658009 | 0.0009985015 | 3.116199 | AAGAAG | AAGAAG |
| PABPC3 | 2 | 1234 | 0.012987013 | 0.0017897669 | 2.859226 | AAAAAC,AAAACA | AAAAAC,AAAACA,AAAACC,GAAAAC |
| HNRNPM | 1 | 999 | 0.008658009 | 0.0014492040 | 2.578775 | GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| ZC3H10 | 1 | 1053 | 0.008658009 | 0.0015274610 | 2.502900 | GCAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| HNRNPL | 8 | 5085 | 0.038961039 | 0.0073706513 | 2.402168 | AAACAC,AAAUAC,AACACA,AAUAAA,AAUACA,ACACCA,CACAAG | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| PABPC5 | 3 | 2400 | 0.017316017 | 0.0034795387 | 2.315139 | AGAAAG,GAAAGU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| IGF2BP3 | 7 | 4815 | 0.034632035 | 0.0069793662 | 2.310939 | AAAAAC,AAAACA,AAACAC,AAAUAC,AACACA,AAUACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| KHDRBS2 | 2 | 1858 | 0.012987013 | 0.0026940701 | 2.269210 | AAUAAA,AUAAAC | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| RBM41 | 1 | 1318 | 0.008658009 | 0.0019115000 | 2.179330 | AUACAU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| RBMX | 6 | 4925 | 0.030303030 | 0.0071387787 | 2.085713 | AAGAAG,AGAAGG,AGUAAC,AUCAAA,GAAGGA,UCAAAA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| TRA2B | 8 | 7329 | 0.038961039 | 0.0106226650 | 1.874886 | AAAGAA,AAGAAG,AAGAAU,AGAAGG,GAAAGA,GAAGGA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| A1CF | 1 | 1642 | 0.008658009 | 0.0023810421 | 1.862442 | UCAGUA | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| G3BP2 | 1 | 1644 | 0.008658009 | 0.0023839405 | 1.860687 | AGGAUG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| IGF2BP2 | 9 | 8408 | 0.043290043 | 0.0121863560 | 1.828768 | AAAAAC,AAAACA,AAACAC,AAAUAC,AACACA,AAUACA,CAAUUC,GAACAC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| TRA2A | 7 | 6871 | 0.034632035 | 0.0099589296 | 1.798045 | AAAGAA,AAGAAA,AAGAAG,AGAAAG,GAAAGA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| AGO2 | 1 | 1830 | 0.008658009 | 0.0026534924 | 1.706143 | AAAGUG | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| QKI | 2 | 2805 | 0.012987013 | 0.0040664663 | 1.675222 | ACACUA,ACUAAC | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| PUM2 | 1 | 1890 | 0.008658009 | 0.0027404447 | 1.659625 | UACAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| ZRANB2 | 2 | 3173 | 0.012987013 | 0.0045997733 | 1.497435 | AGGUAU,GUAAAG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| RBM3 | 1 | 2152 | 0.008658009 | 0.0031201361 | 1.472426 | GAAACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| HNRNPDL | 7 | 8759 | 0.034632035 | 0.0126950266 | 1.447844 | ACACCA,ACAGCA,ACCAGA,ACUAAC,AUCUGA,CACCAG,CUAACU | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
| KHDRBS3 | 2 | 3429 | 0.012987013 | 0.0049707696 | 1.385529 | AAUAAA,AUAAAC | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| SF1 | 3 | 4931 | 0.017316017 | 0.0071474739 | 1.276602 | ACUAAC,AGUAAC,UACUAA | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| NOVA1 | 2 | 3872 | 0.012987013 | 0.0056127669 | 1.210286 | AACACC,AUCACC | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| SART3 | 1 | 2634 | 0.008658009 | 0.0038186524 | 1.180972 | AAAAAC | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| NOVA2 | 2 | 4013 | 0.012987013 | 0.0058171047 | 1.158696 | AACACC,AUCACC | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| PUM1 | 3 | 5823 | 0.017316017 | 0.0084401638 | 1.036764 | AAUUGU,AGAAUU,UACAUA | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| SRSF5 | 5 | 8869 | 0.025974026 | 0.0128544391 | 1.014803 | AAGAAG,CAACAG,CACAGC,UACAUA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| PABPC1 | 2 | 4443 | 0.012987013 | 0.0064402624 | 1.011878 | AAAAAC,ACUAAC | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SRSF11 | 1 | 0 | 0.09090909 | 6.549646e-05 | 10.438792 | AAGAAG | |
| SRSF4 | 1 | 18 | 0.09090909 | 1.244433e-03 | 6.190864 | AAGAAG | AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| RBMX | 2 | 34 | 0.13636364 | 2.292376e-03 | 5.894471 | AAGAAG,AGAAGG | AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA |
| HNRNPA2B1 | 3 | 49 | 0.18181818 | 3.274823e-03 | 5.794936 | AAGAAG,CAAGAA,CCAAGA | AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG |
| TRA2B | 2 | 51 | 0.13636364 | 3.405816e-03 | 5.323315 | AAGAAG,AGAAGG | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| SRSF5 | 1 | 44 | 0.09090909 | 2.947341e-03 | 4.946939 | AAGAAG | AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC |
| TRA2A | 1 | 54 | 0.09090909 | 3.602305e-03 | 4.657432 | AAGAAG | AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SRSF6 | 1 | 68 | 0.09090909 | 4.519256e-03 | 4.330267 | AAGAAG | AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG |
| SRSF7 | 1 | 128 | 0.09090909 | 8.449044e-03 | 3.427565 | AAGAAG | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF10 | 1 | 160 | 0.09090909 | 1.054493e-02 | 3.107875 | AAGAAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF1 | 2 | 625 | 0.13636364 | 4.100079e-02 | 1.733736 | AAGAAG,AGAAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 3.143830e-02 | 1.531901 | AAGAAG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SRSF11 | 1 | 82 | 0.004761905 | 0.0004181782 | 3.509349 | AAGAAG | AAGAAG |
| CPEB4 | 12 | 691 | 0.030952381 | 0.0034864974 | 3.150200 | UUUUUU | UUUUUU |
| DDX19B | 12 | 691 | 0.030952381 | 0.0034864974 | 3.150200 | UUUUUU | UUUUUU |
| EIF4A3 | 12 | 691 | 0.030952381 | 0.0034864974 | 3.150200 | UUUUUU | UUUUUU |
| HNRNPM | 3 | 222 | 0.009523810 | 0.0011235389 | 3.083489 | AAGGAA,GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| HNRNPA1L2 | 2 | 188 | 0.007142857 | 0.0009522370 | 2.907109 | AUAGGG,UAGGGA | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| MATR3 | 2 | 216 | 0.007142857 | 0.0010933091 | 2.707800 | AAUCUU,AUCUUG | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| EIF4B | 2 | 226 | 0.007142857 | 0.0011436921 | 2.642803 | GUUGGA,UUGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| U2AF2 | 13 | 1071 | 0.033333333 | 0.0054010480 | 2.625654 | UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| RALY | 13 | 1117 | 0.033333333 | 0.0056328094 | 2.565039 | UUUUUC,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| SYNCRIP | 12 | 1041 | 0.030952381 | 0.0052498992 | 2.559689 | UUUUUU | AAAAAA,UUUUUU |
| KHDRBS2 | 12 | 1051 | 0.030952381 | 0.0053002821 | 2.545909 | UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| HNRNPU | 12 | 1136 | 0.030952381 | 0.0057285369 | 2.433812 | UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| YBX2 | 2 | 263 | 0.007142857 | 0.0013301088 | 2.424957 | AACAAC,ACAACU | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| HNRNPCL1 | 14 | 1381 | 0.035714286 | 0.0069629182 | 2.358737 | CUUUUU,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| SRSF4 | 5 | 558 | 0.014285714 | 0.0028164047 | 2.342647 | AAGAAG,AGGAAG,GAAGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| SNRPB2 | 2 | 288 | 0.007142857 | 0.0014560661 | 2.294425 | GUAUUG | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| CPEB2 | 14 | 1487 | 0.035714286 | 0.0074969770 | 2.252120 | CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| HNRNPA0 | 1 | 200 | 0.004761905 | 0.0010126965 | 2.233337 | AGUAGG | AAUUUA,AGAUAU,AGUAGG |
| NOVA2 | 13 | 1434 | 0.033333333 | 0.0072299476 | 2.204908 | AGACAU,UUUUUU | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| MSI1 | 8 | 961 | 0.021428571 | 0.0048468360 | 2.144421 | AGGAAG,AGUAAG,AGUAGG,AGUUAG,UAGGAA,UAGUUG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| RBMX | 11 | 1316 | 0.028571429 | 0.0066354293 | 2.106311 | AAGAAG,AAGGAA,AAGUAA,AGAAGG,AGGAAG,GAAGGA,GGAAGG,UCAAAA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| NOVA1 | 12 | 1428 | 0.030952381 | 0.0071997179 | 2.104038 | UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| RBM28 | 2 | 340 | 0.007142857 | 0.0017180572 | 2.055723 | AGUAGG,UGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| FUS | 14 | 1711 | 0.035714286 | 0.0086255542 | 2.049812 | GGGUGU,UGGUGA,UUUUUU | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| ERI1 | 1 | 228 | 0.004761905 | 0.0011537686 | 2.045185 | UUUCAG | UUCAGA,UUUCAG |
| DAZAP1 | 24 | 2878 | 0.059523810 | 0.0145052398 | 2.036893 | AGGAAG,AGGAUG,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAG,UAGGAA,UAGGUU,UAGUAU,UUUUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| HNRNPC | 16 | 2006 | 0.040476190 | 0.0101118501 | 2.001027 | CUUUUU,UUUUUA,UUUUUC,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| RBM46 | 8 | 1091 | 0.021428571 | 0.0055018138 | 1.961556 | AAUGAA,AAUGAU,AUGAAA,AUGAAG,AUGAUA,GAUGAA,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| KHDRBS1 | 15 | 1945 | 0.038095238 | 0.0098045143 | 1.958093 | AUUUAA,CUAAAU,UUUUAC,UUUUUU | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| G3BP2 | 3 | 490 | 0.009523810 | 0.0024738009 | 1.944809 | AGGAUG,AGGAUU,GGAUUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| RBM41 | 3 | 502 | 0.009523810 | 0.0025342604 | 1.909974 | UACAUU,UACUUU,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| KHDRBS3 | 12 | 1646 | 0.030952381 | 0.0082980653 | 1.899203 | UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | AUUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| TRA2B | 10 | 1447 | 0.026190476 | 0.0072954454 | 1.843974 | AAAGAA,AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGAA,GAAGGA,GGAAGG | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| ZCRB1 | 4 | 666 | 0.011904762 | 0.0033605401 | 1.824774 | AUUUAA,GACUUA,GAUUUA,GGAUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| HNRNPA2B1 | 14 | 2033 | 0.035714286 | 0.0102478839 | 1.801175 | AAGAAG,AAGGAA,AAGGGG,ACUAGA,AGGAAC,AGUAGG,AUAGGG,AUUUAA,GAAGGA,GACUAG,UAGACA,UAGGGA,UUUAUA | AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA |
| ELAVL3 | 13 | 1928 | 0.033333333 | 0.0097188634 | 1.778106 | AUUUUA,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| TRA2A | 7 | 1133 | 0.019047619 | 0.0057134220 | 1.737184 | AAAGAA,AAGAAG,AGAAAG,AGGAAG,GAAGAA,GAAGAG | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| PABPC5 | 3 | 596 | 0.009523810 | 0.0030078597 | 1.662801 | AGAAAG,GAAAGU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| FMR1 | 31 | 5430 | 0.076190476 | 0.0273629585 | 1.477386 | AAGGAA,AAGGAU,AGGAAG,AGGAAU,AGGAUG,AGGAUU,CAUAGG,CGGCUG,GAAGGA,GACAGG,GCUGGG,GGACUA,GGCUGG,UAAGGA,UGACAG,UUUUUU | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| ELAVL4 | 16 | 2916 | 0.040476190 | 0.0146966949 | 1.461582 | GUAUCU,UGUAUC,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | AGGAAC | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| HNRNPA1 | 33 | 6340 | 0.080952381 | 0.0319478033 | 1.341357 | ACUAGA,AGGAAG,AGGGAC,AGUAGG,AGUUAG,AUAGGG,AUUUAA,GACUAG,GACUUA,GGAAGG,GGACUU,GGGACU,GUAAGU,UAAGUA,UAGACA,UAGAGU,UAGGAA,UAGGGA,UUUAUA,UUUUUU | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| HNRNPK | 16 | 3244 | 0.040476190 | 0.0163492543 | 1.307849 | GCCCAC,GCCCAG,UCCCAA,UCCCUA,UUUUUU | AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU |
| SRSF5 | 7 | 1578 | 0.019047619 | 0.0079554615 | 1.259593 | AAGAAG,AGGAAG,CACAGC,GAAGAA,GGAAGA,UACAGA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| TIAL1 | 27 | 5597 | 0.066666667 | 0.0282043531 | 1.241048 | AAUUUU,AUUUUA,CAGUUU,CUUUUA,CUUUUC,CUUUUU,UAAAUU,UCAGUU,UUUAAA,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPDL | 12 | 2689 | 0.030952381 | 0.0135530028 | 1.191438 | ACUAGA,AGUAGG,CCAGAC,CUAGAG,CUAGCU,GACUAG,GGACUA,GGAUUA,UAAGUA,UUUAGG | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
| ZNF638 | 2 | 646 | 0.007142857 | 0.0032597743 | 1.131729 | GGUUGU,UGUUGG | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| PCBP2 | 17 | 4164 | 0.042857143 | 0.0209844821 | 1.030213 | AAACCA,AAAUUC,AAUUCA,CCCUAA,UUAGGA,UUUUUU | AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| PABPC4 | 1 | 462 | 0.004761905 | 0.0023327287 | 1.029520 | AAAAAG | AAAAAA,AAAAAG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.