ENSG00000075151:-:1:20849414:20855071

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000075151:-:1:20849414:20855071 ENSG00000075151 ENST00000684485 - 1 20849415 20855071 549 CCUACAAUUGAUGAAAAAAUUCAGCUGGUACCUAAAGCACAGCUAGGCAGCUGGGGAAAAGGCAGCAGUGGUGGAGCAAAGGCAAGUGAGACUGAUGCCUUACGGUCAAGUGCUUCCAGUUUAAACAGAUUCUCUGCCCUGCAACCUCCAGCACCCUCAGGGUCCACGCCAUCCACGCCUGUAGAGUUUGAUUCCCGAAGGACCUUAACUAGUCGUGGAAGUAUGGGCAGGGAGAAGAAUGACAAGCCCCUUCCAUCUGCAACAGCUCGGCCAAAUACUUUCAUGAGGGGUGGCAGCAGUAAAGACCUGCUAGACAAUCAGUCUCAAGAAGAGCAGCGGAGAGAGAUGCUGGAGACCGUGAAGCAGCUCACAGGAGGUGUGGAUGUGGAGAGGAACAGCACUGAGGCUGAGCGAAAUAAAACAAGGGAGUCAGCAAAACCAGAAAUUUCAGCAAUGUCAGCUCAUGACAAGGCUGCAUUAUCAGAAGAGGAACUGGAGAGGAAGUCGAAAUCUAUCAUUGAUGAAUUUCUACACAUUAAUGAUUUUAAGCCUACAAUUGAUGAAAAAAUUCAGCUGGUACCUAAAGCACAGCUAGGCAG circ
ENSG00000075151:-:1:20849414:20855071 ENSG00000075151 ENST00000684485 - 1 20849415 20855071 22 AUGAUUUUAAGCCUACAAUUGA bsj
ENSG00000075151:-:1:20849414:20855071 ENSG00000075151 ENST00000684485 - 1 20855062 20855271 210 AGUCCAGGGAAGUGCUUCAGGGGCCACAUGGAUCCCAGUUUAAUGAGAACAGCUCCAAUUUCUGUUUCUAUUAAAUUGGCAUUCCAAACAAAUUUUUGUUGCUAAAAUUGGUUCUACUUCACUGAAGAAGAAAAAAAUAAAAGAAAAACUAUUCUUCUAGAAUAUUUCCUAUAAUUGACUUGUGGUCCCUUAUGUUACAGCCUACAAUUG ie_up
ENSG00000075151:-:1:20849414:20855071 ENSG00000075151 ENST00000684485 - 1 20849215 20849424 210 UGAUUUUAAGGUAAAUGAGAUUAAAAAAAAAACACACACACAGUAAGUCCUUUGAUAGUAUAGAAUAACUUGGUUCUGGUCUAAAUCAGGUGUCAUUGUGAACUGAUAAGACUUAGGUUGAGUAAUACAAGUCCUACACAAUUCAGUUUGCUUAACGCUGAUGCAUUUCUGCCAAGUACUCUCUUUUAAUUUGAUACUAUAAUUUACAAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 10 1498 0.020036430 0.0021723567 3.205293 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
FXR1 2 411 0.005464481 0.0005970720 3.194108 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SRP14 4 847 0.009107468 0.0012289250 2.889653 CCUGUA,CGCCUG,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IGF2BP1 3 831 0.007285974 0.0012057377 2.595206 AAGCAC,AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
TUT1 2 678 0.005464481 0.0009840095 2.473340 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPN1 3 1222 0.007285974 0.0017723764 2.039437 AGAAGA AAAAGA,AGAAGA
ERI1 1 632 0.003642987 0.0009173461 1.989584 UUUCAG UUCAGA,UUUCAG
SRSF11 1 688 0.003642987 0.0009985015 1.867285 AAGAAG AAGAAG
ZC3H10 2 1053 0.005464481 0.0015274610 1.838949 GAGCGA,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
AGO2 4 1830 0.009107468 0.0026534924 1.779158 AAAAAA,AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF4 9 3740 0.018214936 0.0054214720 1.748365 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
IGHMBP2 1 813 0.003642987 0.0011796520 1.626761 AAAAAA AAAAAA
RBM28 1 822 0.003642987 0.0011926949 1.610897 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC3 2 1234 0.005464481 0.0017897669 1.610313 AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
TRA2A 15 6871 0.029143898 0.0099589296 1.549131 AAGAAG,AAGAGG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM41 2 1318 0.005464481 0.0019115000 1.515379 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPM 1 999 0.003642987 0.0014492040 1.329861 GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM6 1 1054 0.003642987 0.0015289102 1.252618 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ESRP2 3 2150 0.007285974 0.0031172377 1.224854 GGGAAA,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM46 7 4554 0.014571949 0.0066011240 1.142410 AAUGAU,AUCAUU,AUGAAA,AUGAAU,AUGAUU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS3 5 3429 0.010928962 0.0049707696 1.136615 AAAUAA,AAUAAA,AUAAAA,UAAAAC,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FXR2 5 3434 0.010928962 0.0049780156 1.134514 AGACAA,GACAAG,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CELF4 2 1782 0.005464481 0.0025839306 1.080517 GGUGUG,GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 2 1782 0.005464481 0.0025839306 1.080517 AAAGAC,AGACAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SFPQ 39 24050 0.072859745 0.0348548043 1.063764 AAGAGC,AAGAGG,AAGGAC,AAGGGA,AGAGAG,AGAGGA,AGGAAC,AGGACC,CUGGAG,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGAGG,GAGGAA,GGAGAG,GUGGUG,UGAAGC,UGAUUU,UGGAAG,UGGAGA,UGGAGC,UGGUGG,UUAAUG,UUGAUG,UUGAUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
KHDRBS2 2 1858 0.005464481 0.0026940701 1.020297 AAUAAA,AUAAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
PABPC4 1 1251 0.003642987 0.0018144033 1.005627 AAAAAA AAAAAA,AAAAAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YTHDC1 1 20 0.09090909 0.001375426 6.046474 GCCUAC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
IGHMBP2 7 350 0.019047619 0.0017684401 3.429061 AAAAAA AAAAAA
SART3 13 777 0.033333333 0.0039197904 3.088117 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC4 7 462 0.019047619 0.0023327287 3.029520 AAAAAA AAAAAA,AAAAAG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
AGO2 10 677 0.026190476 0.0034159613 2.938679 AAAAAA,AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC1 15 1321 0.038095238 0.0066606207 2.515882 AAAAAA,AAAAAC,ACAAAU,AGAAAA,CAAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
IGF2BP3 15 1348 0.038095238 0.0067966546 2.486714 AAAAAC,AAAACA,AAACAC,AAAUCA,AACACA,AAUACA,AAUUCA,ACACAC,CAAACA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBM3 5 541 0.014285714 0.0027307537 2.387202 AAAACU,AAACUA,AAGACU,AUACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPLL 7 748 0.019047619 0.0037736800 2.335567 ACACAC,CAAACA,CACACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
HNRNPL 14 1419 0.035714286 0.0071543732 2.319604 AAACAA,AAACAC,AAAUAA,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
A1CF 5 598 0.014285714 0.0030179363 2.242939 AGUAUA,AUAAUU,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRSF4 4 558 0.011904762 0.0028164047 2.079612 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
IGF2BP2 18 2163 0.045238095 0.0109028617 2.052831 AAAAAC,AAAACA,AAACAC,AAAUCA,AACACA,AAUACA,AAUUCA,ACACAC,CAAACA,CAAUUC,CACACA,CCAAAC,GCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 AAAAAA AAAAAA,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 GACUUA,GAUUAA,GCUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPU 7 1136 0.019047619 0.0057285369 1.733372 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AAAAAA,AAUUUA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
DAZAP1 16 2878 0.040476190 0.0145052398 1.480499 AAAAAA,AAUUUA,AGGUAA,AGGUUG,AGUAAG,AGUAUA,AGUUUA,AGUUUG,UAGGUU,UAGUAU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
QKI 4 904 0.011904762 0.0045596534 1.384543 ACACAC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM5 11 2359 0.028571429 0.0118903668 1.264780 AAAAAA,AAGGUA,AGGGAA,AGGUAA,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAGAAG,AGAAGA,AUAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GCCUAC,UAAUAC,UCCUAC,UGAUAC,UGAUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
FUS 7 1711 0.019047619 0.0086255542 1.142922 AAAAAA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 AGUAAG,AUACUA,CACUGA,CGCUGA,UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,AUUUAC,CUAAAA,CUAAAU,UAAAAA,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AACAGC,AAGAAG,AGAAGA,GAAGAA,UACAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
PPIE 39 9262 0.095238095 0.0466696896 1.029053 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUU,AAUAAA,AAUAUU,AAUUUA,AAUUUU,AUAAAA,AUAAUU,AUAUUU,AUUAAA,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUU,UAAUUU,UAUAAU,UAUUAA,UUAAAA,UUAAAU,UUAAUU,UUUAAU,UUUUAA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home