ENSG00000138768:+:4:75774675:75812375

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000138768:+:4:75774675:75812375 ENSG00000138768 ENST00000264904 + 4 75774676 75812375 2265 GGCGUCUUACUACUGCAGGCACUAACAAGAAGCAAUGGUGCAAUCCAGAAAAUUGUUGCUUUUGAAAAUGCUUUCGAGAGACUACUGGACAUUAUUUCAGAGGAGGGGAACAGUGAUGGAGGUAUAGUAGUUGAAGAUUGUUUGAUUUUGCUCCAAAACUUAUUAAAAAACAACAACUCCAAUCAAAAUUUUUUUAAAGAAGGCUCAUAUAUUCAACGUAUGAAACCUUGGUUUGAAGUUGGAGAUGAAAAUUCUGGCUGGUCUGCACAGAAAGUGACCAAUCUACAUCUAAUGCUACAGCUUGUUCGUGUAUUGGUAUCUCCCACCAACCCUCCUGGUGCUACCAGUAGCUGCCAGAAGGCUAUGUUCCAGUGUGGGUUAUUGCAGCAGCUUUGUACUAUCCUAAUGGCUACUGGGGUUCCUGCUGAUAUCCUGACUGAGACCAUAAAUACUGUAUCAGAAGUUAUUCGAGGCUGCCAAGUAAACCAAGACUACUUUGCAUCUGUAAAUGCACCUUCAAACCCACCAAGACCGGCAAUUGUAGUACUUCUCAUGUCCAUGGUUAAUGAAAGGCAGCCAUUUGUUUUGCGCUGUGCUGUUCUCUAUUGUUUCCAGUGUUUCUUGUAUAAAAACCAAAAAGGACAAGGAGAAAUCGUGUCAACACUUUUACCUUCUACCAUUGAUGCAACAGGUAAUUCAGUUUCAGCUGGCCAGUUAUUAUGUGGAGGUUUGUUUUCUACUGAUUCACUUUCAAACUGGUGUGCUGCUGUGGCCCUUGCCCAUGCGUUGCAAGAAAAUGCCACCCAGAAAGAACAGUUGCUCAGGGUUCAACUUGCUACAAGUAUUGGCAACCCUCCAGUUUCUUUACUUCAACAGUGCACCAAUAUUCUUUCACAGGGUGAUAAGAUCGACAGACGGGGAAGCAAAAUACAAACAAGAGUUGGAUUAUUAAUGUUGCUUUGUACCUGGCUAAGCAAUUGUCCCAUUGCAGUAACGCAUUUUCUUCACAAUUCAGCCAAUGUUCCAUUUCUUACAGGACAAAUUGCAGAAAAUCUUGGAGAAGAAGAGCAGUUGGUCCAAGGCUUAUGUGCCCUUUUGUUGGGCAUUUCGAUUUAUUUCAAUGAUAACUCACUUGAGAGCUACAUGAAAGAGAAGCUAAAACAACUGAUUGAGAAGAGGAUUGGCAAAGAGAAUUUCAUAGAGAAACUAGGAUUUAUUAGCAAACAUGAGUUGUAUUCCAGAGCAUCUCAGAAACCCCAGCCAAACUUUCCCAGUCCAGAAUACAUGAUAUUUGAUCAUGAGUUUACGAAGCUGGUAAAAGAACUUGAAGGUGUUAUAACUAAGGCUAUUUAUAAGUCCAGUGAAGAAGAUAAAAAAGAAGAAGAGGUGAAAAAAACAUUAGAACAGCAUGACAAUAUUGUGACUCACUACAAAAAUAUGAUUCGAGAGCAGGAUCUCCAACUUGAGGAAUUAAGGCAGCAGGUUUCUACAUUAAAAUGUCAAAAUGAACAGCUCCAGACGGCAGUCACACAGCAAGUAUCACAGAUCCAGCAGCACAAAGACCAGUAUAAUCUUCUUAAAAUACAGCUAGGAAAAGACAAUCAGCAUCAAGGUUCUUACAGUGAGGGGGCUCAGAUGAAUGGCAUUCAGCCAGAAGAAAUUGGUAGAUUGCGAGAAGAGAUAGAAGAAUUAAAACGUAAUCAGGAACUUUUACAAAGCCAGCUGACUGAAAAGGACUCUAUGAUUGAAAAUAUGAAAUCUUCCCAAACAUCUGGCACAAAUGAACAGUCUUCAGCAAUAGUUUCAGCUAGAGAUUCUGAACAAGUUGCAGAAUUAAAACAGGAACUGGCAACUUUAAAGUCUCAGUUAAACUCACAAUCUGUGGAGAUCACCAAACUACAGACAGAAAAGCAGGAACUGUUACAGAAAACAGAAGCGUUUGCAAAAUCAGUUGAGGUACAAGGAGAGACCGAGACUAUAAUAGCCACCAAAACUACUGAUGUAGAAGGAAGACUGUCAGCAUUAUUACAAGAGACCAAAGAGUUAAAGAAUGAAAUUAAAGCUCUGUCUGAGGAAAGAACUGCCAUUAAAGAGCAGCUGGAUUCAUCUAAUAGUACCAUUGCCAUUUUACAAACUGAGAAAGACAAACUAGAGUUGGAAAUUACAGAUUCUAAAAAAGAACAAGAUGAUCUCUUGGUGCUCUUGGCCGAUCAAGAUCAGAAAAUACUGUCAUUGAAGAAUAAACUCAAGGAUCUUGGUCAUCCAGGCGUCUUACUACUGCAGGCACUAACAAGAAGCAAUGGUGCAAUCCAGAA circ
ENSG00000138768:+:4:75774675:75812375 ENSG00000138768 ENST00000264904 + 4 75774676 75812375 22 UUGGUCAUCCAGGCGUCUUACU bsj
ENSG00000138768:+:4:75774675:75812375 ENSG00000138768 ENST00000264904 + 4 75774476 75774685 210 CUAGUGUCUGUCUCUUUGAGGUUUAUAACCUUAGGGAGACAAAUUGCUUAACUAUUCUGUUCUUGUUUUCCUUAUGUAUAAAGUAAAGGAGUUGGGCUUGCAAAAUCUCUGCCAGUUCUAAAAUUCUGUGAUUUUUGAAGUAAUUUAAAAAUGUCUCAUAAAUUUUGUACUCCACUAAACAUUCUCUUUCUUCUCUAUAGGGCGUCUUAC ie_up
ENSG00000138768:+:4:75774675:75812375 ENSG00000138768 ENST00000264904 + 4 75812366 75812575 210 UGGUCAUCCAGUAAGAUUAAAAUGUCUCCAAAAAUGAUUUGUAUUAUGUUUUAGUAUAAUGCAUUUAAAAGAUUUUUAAUGUAACAUGGAAAAGUUGUGCCUGUAUUAUAGGAAUGGAUAUGUGGGUUCAUGAAUAUGGUACCAUCUAUACUGUUUUCACUGUUUUCAUUGAAUUUACUUAAUACACAGAUUAGGUUCAGUUUUCAGUAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 6 489 0.003090508 0.0007101099 2.121730 ACAAGA,CAAGAC ACAAGA,CAAGAC
RBM42 4 407 0.002207506 0.0005912752 1.900515 AACUAA,AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
SNRPB2 11 991 0.005298013 0.0014376103 1.881779 AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPN1 13 1222 0.006181015 0.0017723764 1.802159 AAAAGA,AGAAGA AAAAGA,AGAAGA
TUT1 6 678 0.003090508 0.0009840095 1.651100 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 6 688 0.003090508 0.0009985015 1.630007 AAGAAG AAGAAG
PABPC5 22 2400 0.010154525 0.0034795387 1.545155 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CNOT4 2 314 0.001324503 0.0004564992 1.536767 GACAGA GACAGA
AGO1 4 548 0.002207506 0.0007956130 1.472278 GAGGUA,GUAGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC3 10 1234 0.004856512 0.0017897669 1.440149 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPAB 14 1782 0.006622517 0.0025839306 1.357812 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM3 17 2152 0.007947020 0.0031201361 1.348805 AAAACG,AAAACU,AAACUA,AAGACU,AAUACU,AGACUA,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
MATR3 5 739 0.002649007 0.0010724109 1.304594 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGF2BP3 38 4815 0.017218543 0.0069793662 1.302795 AAAAAC,AAAACA,AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,CAAACA,CAAUCA,CACACA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ERI1 4 632 0.002207506 0.0009173461 1.266879 UUCAGA,UUUCAG UUCAGA,UUUCAG
ZCRB1 11 1605 0.005298013 0.0023274215 1.186719 AAUUAA,GAAUUA,GAUUUA,GGAUUA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 5 813 0.002649007 0.0011796520 1.167090 AAAAAA AAAAAA
PABPC4 8 1251 0.003973510 0.0018144033 1.130919 AAAAAA,AAAAAG AAAAAA,AAAAAG
TRA2A 48 6871 0.021633554 0.0099589296 1.119208 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TRA2B 51 7329 0.022958057 0.0106226650 1.111855 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZFP36L2 8 1277 0.003973510 0.0018520827 1.101265 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SRSF4 25 3740 0.011479029 0.0054214720 1.082244 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
KHDRBS1 27 4064 0.012362031 0.0058910141 1.069328 AUAAAA,CAAAAU,CUAAAA,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
YBX2 9 1480 0.004415011 0.0021462711 1.040585 AACAAC,AACAUC,ACAACA,ACAACU,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
IGF2BP2 55 8408 0.024724062 0.0121863560 1.020649 AAAAAC,AAAACA,AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,CAAAAC,CAAACA,CAACAC,CAACUC,CAAUCA,CAAUUC,CACACA,CAUUCA,CCAAAC,CCAAUC,GAAAAC,GAAAUC,GAAUAC,GCAAAC,GCAAUC,GCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBFOX2 2 452 0.001324503 0.0006564894 1.012608 UGACUG UGACUG,UGCAUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM6 1 0 0.09090909 6.549646e-05 10.438792 AUCCAG  
G3BP1 1 69 0.09090909 4.584752e-03 4.309509 CCAGGC ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
SRSF2 2 479 0.13636364 3.143830e-02 2.116864 AGGCGU,UCCAGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 3 188 0.009523810 0.0009522370 3.322146 AUAGGG,UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
SSB 6 505 0.016666667 0.0025493753 2.708750 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
ZCRB1 6 666 0.016666667 0.0033605401 2.310201 ACUUAA,AUUUAA,GAUUAA,GCUUAA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUUUAA,AUUUAC,CAAAAU,CUAAAA,UAAAAA,UAAAAG,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AGUAUA,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA2B1 9 2033 0.023809524 0.0102478839 1.216213 AAGGAG,AAUUUA,AUAGGG,AUUUAA,UAGGGA,UUAGGG,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CUCUUU,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUCUGU,UAUGUG,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AAAUUU,AAUUUU,AGUUUU,AUUUUG,AUUUUU,CAGUUU,GUUUUC,UAAAUU,UCAGUU,UUCAGU,UUUAAA,UUUCAG,UUUUAA,UUUUCA,UUUUUA,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 CACUAA,CUCAUA,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUA,AAUUUU,AUUUAA,AUUUAC,AUUUUG,AUUUUU,CUUUCU,GAUUUU,GUUUUA,GUUUUC,UAAUUU,UAUACU,UAUGUU,UAUUAU,UGAUUU,UGUAUU,UUACUU,UUAUGU,UUCAUU,UUGUAU,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUCAU,UUUCUU,UUUUAA,UUUUAG,UUUUUA,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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