ENSG00000060237:+:12:813641:830160

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000060237:+:12:813641:830160 ENSG00000060237 ENST00000530271 + 12 813642 830160 552 GAUCGAAAAUUAACAAAGUCUGAGAGGCAGAGAUUUAAAGAAGAAGCUGAAAUGUUAAAAGGUCUUCAGCAUCCCAAUAUUGUUAGAUUUUAUGAUUCCUGGGAAUCCACAGUAAAAGGAAAGAAGUGCAUUGUUUUGGUGACUGAACUUAUGACGUCUGGAACACUUAAAACGUAUCUGAAAAGGUUUAAAGUGAUGAAGAUCAAAGUUCUAAGAAGCUGGUGCCGUCAGAUCCUUAAAGGUCUUCAGUUUCUUCAUACUCGAACUCCACCUAUCAUUCACCGCGAUCUUAAAUGUGACAACAUCUUUAUCACCGGCCCUACUGGCUCAGUCAAGAUUGGAGACCUCGGUCUGGCAACCCUGAAGCGGGCUUCUUUUGCCAAGAGUGUGAUAGGUACCCCAGAGUUCAUGGCCCCUGAGAUGUAUGAGGAGAAAUAUGAUGAAUCCGUUGACGUUUAUGCUUUUGGGAUGUGCAUGCUUGAGAUGGCUACAUCUGAAUAUCCUUACUCGGAGUGCCAAAAUGCUGCACAGAUCUACCGUCGCGUGACCAGUGAUCGAAAAUUAACAAAGUCUGAGAGGCAGAGAUUUAAAGAAGAAGCUGA circ
ENSG00000060237:+:12:813641:830160 ENSG00000060237 ENST00000530271 + 12 813642 830160 22 GCGUGACCAGUGAUCGAAAAUU bsj
ENSG00000060237:+:12:813641:830160 ENSG00000060237 ENST00000530271 + 12 813442 813651 210 GUUACACAUUAACAGUAAAGAUACUAAAAUGAUCUCAAGCAUGAAUGUAUAUAAUCCAAAUCUAUCAUUUAUAACUUCAGCAUUUGCAUUUUUUAAACACCAUCGAUCAUGAUUUAGUAAUGUUUAAGUGUCUAAGAUUAACUGUCUGAUUUGGUGUUUUAUCAUUUUAAACCACAUUCUGUUUUGGUUUUUGAUUUUAGGAUCGAAAAU ie_up
ENSG00000060237:+:12:813641:830160 ENSG00000060237 ENST00000530271 + 12 830151 830360 210 CGUGACCAGUGUAAGUCUUCCCCUAACUGAUUGUUGAACUUGGGGCAUAUCUAACAAAGAAUCCCAAGGUGGAUGACAUCAAACCAUGUAAAAGAGGACAAUAGUGGAAGGCAUACUGAGUGAACUGUUGGGGUUGGGGGGGUGGUGUUGAGGUAUGUGUAAGGCUAUUGCUCAUGAUACAGUGAAAGAUAAAGAUCAAAGAACCACUAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 4 688 0.009057971 0.0009985015 3.181351 AAGAAG AAGAAG
RBFOX2 2 452 0.005434783 0.0006564894 3.049379 UGACUG,UGCAUG UGACUG,UGCAUG
ANKHD1 1 339 0.003623188 0.0004927293 2.878393 GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
FXR1 1 411 0.003623188 0.0005970720 2.601283 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
ZCRB1 6 1605 0.012681159 0.0023274215 2.445882 AAUUAA,ACUUAA,AUUUAA,GAUUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
MATR3 2 739 0.005434783 0.0010724109 2.341365 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBFOX1 3 1077 0.007246377 0.0015622419 2.213642 GCAUGC,UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
YBX2 4 1480 0.009057971 0.0021462711 2.077356 AACAUC,ACAACA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ZRANB2 9 3173 0.018115942 0.0045997733 1.977625 AAAGGU,AGGUAC,AGGUCU,AGGUUU,CGGUCU,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
KHDRBS1 8 4064 0.016304348 0.0058910141 1.468669 AUUUAA,CAAAAU,UAAAAC,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
IFIH1 1 904 0.003623188 0.0013115296 1.466009 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM46 9 4554 0.018115942 0.0066011240 1.456476 AUCAAA,AUCAUU,AUGAAG,AUGAAU,AUGAUG,AUGAUU,GAUCAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO2 3 1830 0.007246377 0.0026534924 1.449367 AAAGUG,AAGUGC,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM24 4 2357 0.009057971 0.0034172229 1.406364 AGAGUG,AGUGUG,GAGUGU,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
HNRNPM 1 999 0.003623188 0.0014492040 1.321999 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBM6 1 1054 0.003623188 0.0015289102 1.244756 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SRSF4 6 3740 0.012681159 0.0054214720 1.225930 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMX 8 4925 0.016304348 0.0071387787 1.191508 AAGAAG,AAGGAA,AUCAAA,AUCCCA,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
TRA2B 12 7329 0.023550725 0.0106226650 1.148626 AAAGAA,AAGAAG,AAGGAA,AGAAGA,AGGAAA,GAAAGA,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
EIF4B 1 1179 0.003623188 0.0017100607 1.083212 CUCGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 1 1222 0.003623188 0.0017723764 1.031575 AGAAGA AAAAGA,AGAAGA
SNRNP70 1 1237 0.003623188 0.0017941145 1.013988 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ACO1 1 8 0.09090909 0.0005894682 7.268867 CAGUGA CAGUGA,CAGUGC,CAGUGG
SRSF2 2 479 0.13636364 0.0314383023 2.116864 CCAGUG,UGAUCG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 GGGGGG AAGGAA,GAAGGA,GGGGGG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPAB 3 351 0.009523810 0.0017734784 2.424957 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM46 11 1091 0.028571429 0.0055018138 2.376594 AAUGAU,AUCAAA,AUCAUG,AUCAUU,AUGAAU,AUGAUA,AUGAUU,GAUCAA,GAUCAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SF1 8 1294 0.021428571 0.0065245869 1.715577 AUACUA,AUUAAC,CUAACA,UAACAA,UACUAA,UACUGA,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAUAU,UAUAUA,UGUAAA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUU,GUGUUG,GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 GAUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUUG,GUGUUU,GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 2 541 0.007142857 0.0027307537 1.387202 AUACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
QKI 4 904 0.011904762 0.0045596534 1.384543 AUCUAA,AUUAAC,CUAACA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACACCA,ACCACA,GCAUAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGUGU,AUCAAA,AUCCCA,GGAAGG,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAAGAA,AAGAGG,AGAGGA,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AACACC,AGAUCA,AGGCAU,GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAGAAC,AAGAAU,GAAAGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 AACCAC,ACACCA,ACAUCA,ACCACA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,GUAUGU,UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UGAUUU,UGGUUU,UGUUUU,UUGAUU,UUGGUU,UUUAGU,UUUGGU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AGAUAA,AUAAAG,GAUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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