ENSG00000146263:-:6:97246627:97254733

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000146263:-:6:97246627:97254733 ENSG00000146263 ENST00000275053 - 6 97246628 97254733 240 UCAUUUUGGAACUGGUUGAAUAAACUACUUAAAACACUGCUUGAAAAAUCAAGUGACCGAAGAAGAUCCUCUAUGCCUGUAAUCCAGUCCAGGGAUCCAUUAGGUUUUAGUUGGUGGAUUAUUACUCAUGUAGCAUCAUUUUACAAGUUUGAUCGCCAUGGAGUACCAGAUGAAAUGAGAAAAGUGGAAUCAAAUUGGAACUUUGUAGAAGAACUGCUGAAAAAGUCCAUCAGUGUUCAGUCAUUUUGGAACUGGUUGAAUAAACUACUUAAAACACUGCUUGAAAAAUC circ
ENSG00000146263:-:6:97246627:97254733 ENSG00000146263 ENST00000275053 - 6 97246628 97254733 22 UCAGUGUUCAGUCAUUUUGGAA bsj
ENSG00000146263:-:6:97246627:97254733 ENSG00000146263 ENST00000275053 - 6 97254724 97254933 210 AGGAAGAUGUGGUGACCUGUAAGGUACUUCUAAAGUACUAUUUAUGUUCUGAUUCUUAACCUGGGCAUUUUUAUUAUUUCAGUUUUAUAUAUGUGUUUUGUCUUUUGUAUAUAUGCUUCAUUAUAAAAAUAGAGAAAAACCACGAAAUCAAAGGUUAUUGAAACUGUCUUAAUGGAAUCAAAUUACUUCUGUUUCUAUAGUCAUUUUGGA ie_up
ENSG00000146263:-:6:97246627:97254733 ENSG00000146263 ENST00000275053 - 6 97246428 97246637 210 CAGUGUUCAGGUAUGCAAUUAAAGUAAGACAGUUUGUGGAUUUUGCUUAAUUUUUAUGUUACAAAUUUUAUUUUUAAAACCAAGCAAGCUGUUAAAAUGAUUCAGAAAACAAAUAACUUUCAUGCUUUGAAGGGUUAACUCACAGUAGUUUCUUUUAGUGAUUAUUCUUUAAAGAUUUUUAACACUAAGUUGUCAGUUAAAGGACAAUAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.008333333 0.0002275250 5.194797 AGGGAU AGGGAU
RBM42 1 407 0.008333333 0.0005912752 3.816992 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
SRP14 2 847 0.012500000 0.0012289250 3.346459 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
SNRNP70 3 1237 0.016666667 0.0017941145 3.215622 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF11 1 688 0.008333333 0.0009985015 3.061057 AAGAAG AAGAAG
RBM6 2 1054 0.012500000 0.0015289102 3.031353 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
EIF4B 2 1179 0.012500000 0.0017100607 2.869809 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 2 1222 0.012500000 0.0017723764 2.818171 AGAAGA AAAAGA,AGAAGA
RBM28 1 822 0.008333333 0.0011926949 2.804669 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ZCRB1 2 1605 0.012500000 0.0023274215 2.425124 ACUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM46 7 4554 0.033333333 0.0066011240 2.336182 AAUCAA,AUCAAA,AUCAAG,AUCAUU,AUGAAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC3 1 1234 0.008333333 0.0017897669 2.219122 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
KHDRBS2 2 1858 0.012500000 0.0026940701 2.214069 AAUAAA,AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SRSF4 5 3740 0.025000000 0.0054214720 2.205172 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC4 1 1251 0.008333333 0.0018144033 2.199398 AAAAAG AAAAAA,AAAAAG
ACO1 1 1283 0.008333333 0.0018607779 2.162988 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
SART3 3 2634 0.016666667 0.0038186524 2.125830 AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
KHDRBS3 4 3429 0.020833333 0.0049707696 2.067353 AAUAAA,AUAAAC,UAAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CPEB2 2 2261 0.012500000 0.0032780993 1.930997 CAUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
KHDRBS1 4 4064 0.020833333 0.0058910141 1.822306 UAAAAC,UUAAAA,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
A1CF 1 1642 0.008333333 0.0023810421 1.807301 AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 1 1644 0.008333333 0.0023839405 1.805545 GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ZNF638 1 1773 0.008333333 0.0025708878 1.696627 GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
AGO2 1 1830 0.008333333 0.0026534924 1.651001 AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
MSI1 2 2770 0.012500000 0.0040157442 1.638189 AGUUGG,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
QKI 2 2805 0.012500000 0.0040664663 1.620081 ACUCAU,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 1 1890 0.008333333 0.0027404447 1.604484 UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
IGF2BP3 4 4815 0.020833333 0.0069793662 1.577726 AAAACA,AAAAUC,AAACAC,AAAUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
TRA2B 6 7329 0.029166667 0.0106226650 1.457175 AAGAAC,AAGAAG,AGAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZRANB2 2 3173 0.012500000 0.0045997733 1.442293 AGGUUU,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM3 1 2152 0.008333333 0.0031201361 1.417285 AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC1 3 4443 0.016666667 0.0064402624 1.371774 AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 5 6871 0.025000000 0.0099589296 1.327866 AAGAAG,AGAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PUM1 4 5823 0.020833333 0.0084401638 1.303551 GUCCAG,UGUAAU,UGUAGA,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC5 1 2400 0.008333333 0.0034795387 1.259998 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMX 3 4925 0.016666667 0.0071387787 1.223216 AAGAAG,AGUGUU,AUCAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
NOVA1 2 3872 0.012500000 0.0056127669 1.155144 CAGUCA,UCAGUC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ELAVL2 12 18468 0.054166667 0.0267653478 1.017039 AUUAUU,AUUUUA,AUUUUG,CAUUUU,GUUUUA,UCAUUU,UUAGUU,UUUAGU,UUUGAU,UUUUAG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 1 2867 0.008333333 0.0041563169 1.003588 AUUUUA AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NOVA1 2 5 0.13636364 0.0003929788 8.438792 CAGUCA,UCAGUC ACCACC,CAGUCA,CAUUCA,UCAGUC
NOVA2 1 15 0.09090909 0.0010479434 6.438792 AGUCAU ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
SF1 1 24 0.09090909 0.0016374116 5.794936 CAGUCA ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
TIAL1 1 26 0.09090909 0.0017684045 5.683904 UUCAGU AAAUUU,AAUUUU,AGUUUU,AUUUUG,CAGUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUCAGU,UUUCAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
AKAP1 4 221 0.011904762 0.0011185006 3.411901 AUAUAU,UAUAUA AUAUAU,UAUAUA
PABPC3 5 310 0.014285714 0.0015669085 3.188580 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM42 1 103 0.004761905 0.0005239823 3.183949 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AUAUAU,CUAUAG,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SRP14 1 218 0.004761905 0.0011033857 2.109602 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC1 8 1321 0.021428571 0.0066606207 1.685807 AAAAAC,ACAAAU,AGAAAA,CAAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TIAL1 36 5597 0.088095238 0.0282043531 1.643146 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUG,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUUA AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAUAU,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL2 63 9826 0.152380952 0.0495112858 1.621853 AAUUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUG,AUUUUU,CAUUUU,CUUUAA,CUUUUA,GAUUUU,GUUUUA,UAAGUU,UAAUUU,UAUAUA,UAUGUU,UAUUAU,UAUUGA,UAUUUA,UAUUUU,UCAUUU,UCUUUU,UUAAUU,UUACUU,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGUAU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AAUCAA,AAUGAU,AUCAAA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL4 17 2916 0.042857143 0.0146966949 1.544044 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PPIE 53 9262 0.128571429 0.0466696896 1.462012 AAAAAU,AAAAUA,AAAUAA,AAAUUA,AAAUUU,AAUUAA,AAUUUU,AUAAAA,AUAUAU,AUUAAA,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAUUU,UAUAAA,UAUAUA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF2 4 881 0.011904762 0.0044437727 1.421682 AUGUGU,UAUGUG,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGUAA,AGGAAG,AGUGUU,AUCAAA,UAAGAC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAGACA,AGACAG,AGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
TIA1 26 5140 0.064285714 0.0259018541 1.311443 AUUUUG,AUUUUU,CUUUUA,CUUUUG,GUUUUA,GUUUUG,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUGG,UUUUGU,UUUUUA AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AAAGGU,AGGUAC,AGGUAU,AGGUUA,GUGGUG,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CAUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,UUUUUA AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACUA,CACUAA,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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