ENSG00000138430:-:2:174223032:174229451

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000138430:-:2:174223032:174229451 ENSG00000138430 ENST00000284719 - 2 174223033 174229451 272 GAAAUCUACUUUCUUCAAUGUGUUAACCAAUAGUCAGGCUUCAGCAGAAAACUUCCCGUUCUGCACUAUUGAUCCUAAUGAGAGCAGAGUACCUGUGCCAGAUGAAAGGUUUGACUUUCUUUGUCAAUACCACAAACCAGCAAGCAAAAUUCCUGCCUUUCUAAAUGUGGUGGAUAUUGCUGGCCUUGUGAAAGGAGCUCACAAUGGGCAGGGCCUGGGGAAUGCUUUUUUAUCUCAUAUUAGUGCCUGUGAUGGCAUCUUUCAUCUAACACGAAAUCUACUUUCUUCAAUGUGUUAACCAAUAGUCAGGCUUCAGCAGAAA circ
ENSG00000138430:-:2:174223032:174229451 ENSG00000138430 ENST00000284719 - 2 174223033 174229451 22 UCAUCUAACACGAAAUCUACUU bsj
ENSG00000138430:-:2:174223032:174229451 ENSG00000138430 ENST00000284719 - 2 174229442 174229651 210 UAUAAGUCAUGAGCUGCCGCUUUACUGUUGUAAAUUUCAUUCACUUCUGUUAGUAAAAAAUGUAUUGUUCCUUUUUCCCUCUCUUUGUAGAUUGGUUUUAUAUUCCUCAUGGAUCUUAUUUGAGCAUUGAAAUUAGAGUGAGAUAAAUUUUUCUUGGUGUUAACCUAAGAAUUGAUUGAAAUUGCUUUUAUUUGUUUUAGGAAAUCUACU ie_up
ENSG00000138430:-:2:174223032:174229451 ENSG00000138430 ENST00000284719 - 2 174222833 174223042 210 CAUCUAACACGUAAGUACAGUUGUUUAUUUAAUCAUUGAUUUCAUUCAGAUCAGUGUUUUCUUUCCAUUAGUGCACAAAUAAAAUUAGAAAUGACUAAUGGAAGAUUGCUUUGCUUUACCAGAUGAAUCUUGGGUUUGUCUGUAAAUCUGUGACUUUAAUGUUACUUAGUAUCAUCUCCGUAUCUGAAGGCUUAUUCCAUAGCAAGUAUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TUT1 1 678 0.007352941 0.0009840095 2.901577 CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
MATR3 1 739 0.007352941 0.0010724109 2.777464 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
QKI 6 2805 0.025735294 0.0040664663 2.661901 AUCUAA,AUCUAC,CUAACA,CUCAUA,UCAUAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CPEB4 1 821 0.007352941 0.0011912456 2.625850 UUUUUU UUUUUU
DDX19B 1 821 0.007352941 0.0011912456 2.625850 UUUUUU UUUUUU
EIF4A3 1 821 0.007352941 0.0011912456 2.625850 UUUUUU UUUUUU
IGF2BP1 1 831 0.007352941 0.0012057377 2.608405 CCCGUU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SRP14 1 847 0.007352941 0.0012289250 2.580925 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
SNRPB2 1 991 0.007352941 0.0014376103 2.354649 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF6 5 2997 0.022058824 0.0043447134 2.344023 GUGAUG,GUGGUG,UGUGAU,UGUGGU,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ESRP2 3 2150 0.014705882 0.0031172377 2.238053 GGGAAU,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPC3 1 1234 0.007352941 0.0017897669 2.038550 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ZRANB2 4 3173 0.018382353 0.0045997733 1.998687 AAAGGU,AGGUUU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM41 1 1318 0.007352941 0.0019115000 1.943616 UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPCL1 2 2062 0.011029412 0.0029897078 1.883279 CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPC 4 3471 0.018382353 0.0050316361 1.869222 CUUUUU,GGAUAU,UUUUUA,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 1 1415 0.007352941 0.0020520728 1.841240 UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPA3 2 2140 0.011029412 0.0031027457 1.829739 AAGGAG,AGGAGC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
U2AF2 1 1477 0.007352941 0.0021419234 1.779415 UUUUUU UUUUCC,UUUUUC,UUUUUU
PABPC1 5 4443 0.022058824 0.0064402624 1.776164 ACAAAC,AGAAAA,CAAACC,CUAACA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CPEB2 2 2261 0.011029412 0.0032780993 1.750424 CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 1 1553 0.007352941 0.0022520629 1.707074 UUUUUU UUUUUC,UUUUUG,UUUUUU
KHDRBS1 4 4064 0.018382353 0.0058910141 1.641734 CAAAAU,CUAAAU,GAAAAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SYNCRIP 1 1634 0.007352941 0.0023694485 1.633770 UUUUUU AAAAAA,UUUUUU
SART3 2 2634 0.011029412 0.0038186524 1.530220 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZNF638 1 1773 0.007352941 0.0025708878 1.516055 CGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 1 1782 0.007352941 0.0025839306 1.508754 UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
KHDRBS2 1 1858 0.007352941 0.0026940701 1.448534 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CELF2 1 1886 0.007352941 0.0027346479 1.426966 AUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPU 1 1965 0.007352941 0.0028491350 1.367797 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CSTF2 1 1967 0.007352941 0.0028520334 1.366331 UGUGUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPL 4 5085 0.018382353 0.0073706513 1.318457 ACACGA,ACCACA,CACAAA,CACGAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ELAVL4 4 5105 0.018382353 0.0073996354 1.312795 AUCUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PTBP1 15 16854 0.058823529 0.0244263326 1.267956 ACUUUC,CAUCUU,CCUUUC,CUUUCU,CUUUUU,UACUUU,UCUUUC,UUCUUC,UUCUUU,UUUCUU,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
RBM3 1 2152 0.007352941 0.0031201361 1.236712 AAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
YTHDC1 4 5576 0.018382353 0.0080822104 1.185500 GAAUGC,GAGUAC,UAGUGC,UCCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
HNRNPLL 2 3534 0.011029412 0.0051229360 1.106313 ACAAAC,ACCACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
CELF1 1 2391 0.007352941 0.0034664959 1.084843 UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 1 2400 0.007352941 0.0034795387 1.079425 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPH2 7 9711 0.029411765 0.0140746688 1.063292 AAUGUG,AUGUGG,CUGGGG,GGAAUG,GGGAAU,GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
FUS 2 3648 0.011029412 0.0052881452 1.060522 UGGUGG,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SNRPA 5 7380 0.022058824 0.0106965744 1.044207 AUUCCU,GAGCAG,UACCUG,UCCUGC,UUCCUG ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPL 2 14 0.1363636 0.0009824469 7.116864 ACACGA,CACGAA AAAUAA,AAAUAC,AACAAA,ACACCA,ACAUAA,ACAUAC,CACAAC,CACCAC,CAUAAA,CAUACA
SRSF1 2 625 0.1363636 0.0410007860 1.733736 AACACG,ACACGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 3 216 0.009523810 0.0010933091 3.122837 AAUCUU,AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
QKI 8 904 0.021428571 0.0045596534 2.232540 AAUCAU,ACUAAU,AUCUAA,AUCUAC,CUAACA,UAACCU,UAAUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAAAU,GUAGAU,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
PUM1 15 2172 0.038095238 0.0109482064 1.798916 AAUGUU,AGAAUU,AGAUAA,GAAUUG,GUAAAU,GUAGAU,UAAUGU,UGUAAA,UGUAGA,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,UAUUUA,UUAGAG,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AGUAUA,AUCAGU,GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NOVA1 7 1428 0.019047619 0.0071997179 1.403598 AUCAUC,CAUUCA,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAUUUA,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAUU,UUUGUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUAAU,CUAACA,GACUAA,GCUGCC,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AUCAUU,AUGAAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA,ACAAAU,ACUAAU,CAAAUA,CUAACA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUCUGU,GUUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL2 43 9826 0.104761905 0.0495112858 1.081285 AAUUUU,AUUUAA,AUUUUU,CUUUAA,CUUUUA,CUUUUU,GUAUUG,GUUUUA,GUUUUC,UAUAUU,UAUUGU,UAUUUA,UAUUUG,UCUUAU,UGAUUU,UGUAUU,UUACUU,UUAUAU,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUUAAU,UUUACU,UUUAUA,UUUAUU,UUUCAU,UUUCUU,UUUUAG,UUUUAU,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AAAAAA,AUCUAA,GUAUCU,UAUUUA,UUAUUU,UUUAUU,UUUGUA,UUUUAU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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