circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000108953:-:17:1400046:1400461
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000108953:-:17:1400046:1400461 | ENSG00000108953 | MSTRG.13353.1 | - | 17 | 1400047 | 1400461 | 415 | GAGCAGUCCCGGCCGGCCCCGCCUCAGCCCUUCUCGUUCCCCGGGGGCCGCUCCCUUUCGGCAGUCGCAGUUCCCGCCUCUGGGCUCCGGCGCCCGCUGAGCCGACAGAGGAGAGGCGUCUCGUGCGCUCGUUCCAGCCGCUUCGGGCGCCGAGUUCCAGGACCCGCCCCCCGCGCCAGUUGCCAGGGAGCGGUUGCCAUAGAGCUGAGCAGUUGUCCGCGUGCGCAGGCGGAAGUCCCGGAUUGAGGCGCCGCCAUUUUUGCUGCCCGGACGCGGAGCGAGAGGCUGAGAGAGUCGGAGACACUAUCCGCUUCCAUCCGUCGCGCAGACCCUGCCGGAGCCGCUGCCGCUAUGGAUGAUCGAGAGGAUCUGGUGUACCAGGCGAAGCUGGCCGAGCAGGCUGAGCGAUACGACGGAGCAGUCCCGGCCGGCCCCGCCUCAGCCCUUCUCGUUCCCCGGGGGCCG | circ |
| ENSG00000108953:-:17:1400046:1400461 | ENSG00000108953 | MSTRG.13353.1 | - | 17 | 1400047 | 1400461 | 22 | GCGAUACGACGGAGCAGUCCCG | bsj |
| ENSG00000108953:-:17:1400046:1400461 | ENSG00000108953 | MSTRG.13353.1 | - | 17 | 1400452 | 1400661 | 210 | GGAACAAGAGGGAAACUCCGUCUCAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAGAAAACCAGGGCGCGGUAGUGACAGCCUCAGAUUUCGGGAAAGAAGACCUGCCAUGACAGAAACCGUUACAGCCUCCGUCGUUCUUUUCCGCAGGUCGGGCCUCGGGCCCCGGUCUGACCCAGGUCUCUCGCUGGCUUUUUUCAGGAGCAGUCCC | ie_up |
| ENSG00000108953:-:17:1400046:1400461 | ENSG00000108953 | MSTRG.13353.1 | - | 17 | 1399847 | 1400056 | 210 | CGAUACGACGGUGAGUUGGGGGGGCAACGGGGGGCUGGAAUUCUCGGACCCUCUGCCGCCGCCCACAGAGGCCGGGAACAGGAGACAAAAUGGCGGCAUCGUCUGCGAGCCUGGCCCGGGGGCUUGGGUUCGGGAAGCAGGAAAUGGCCUGGGAGCUCCCGGGGCGAUGGGAGGCUCUAUGCCCUGGAAUGUGACCCCUUCGCCGUCCUU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| PPRC1 | 7 | 780 | 0.019277108 | 0.0011318283 | 4.090162 | CCGCGC,CGCGCC,CGGCGC,GGCGCC,GGGCGC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| SUPV3L1 | 1 | 199 | 0.004819277 | 0.0002898408 | 4.055484 | CCGCCC | CCGCCC |
| RBM8A | 4 | 611 | 0.012048193 | 0.0008869128 | 3.763881 | CGCGCC,GUGCGC,UGCGCU | ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU |
| RBM25 | 1 | 268 | 0.004819277 | 0.0003898359 | 3.627878 | UCGGGC | AUCGGG,CGGGCA,UCGGGC |
| CNOT4 | 1 | 314 | 0.004819277 | 0.0004564992 | 3.400132 | GACAGA | GACAGA |
| FXR1 | 1 | 411 | 0.004819277 | 0.0005970720 | 3.012840 | ACGACG | ACGACA,ACGACG,AUGACA,AUGACG |
| ZC3H10 | 4 | 1053 | 0.012048193 | 0.0015274610 | 2.979609 | GAGCGA,GGAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| IFIH1 | 3 | 904 | 0.009638554 | 0.0013115296 | 2.877566 | CGCGGA,GGCCGC,GGGCCG | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| RBM14 | 1 | 478 | 0.004819277 | 0.0006941687 | 2.795459 | CGCGCC | CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG |
| NONO | 5 | 1498 | 0.014457831 | 0.0021723567 | 2.734518 | AGAGGA,GAGAGG | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| TUT1 | 1 | 678 | 0.004819277 | 0.0009840095 | 2.292073 | CGAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| RC3H1 | 3 | 1786 | 0.009638554 | 0.0025897275 | 1.896016 | CCCUUC,CCUUCU,UCCCUU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| G3BP2 | 2 | 1644 | 0.007228916 | 0.0023839405 | 1.600431 | GGAUGA,GGAUUG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| EIF4B | 1 | 1179 | 0.004819277 | 0.0017100607 | 1.494769 | GUCGGA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| MBNL1 | 21 | 13372 | 0.053012048 | 0.0193802045 | 1.451736 | CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CGCUGC,CGCUUC,CUGCCC,CUGCCG,GCGCUC,GUCUCG,UCCGCU,UGCUGC,UUGCCA,UUGCUG,UUUGCU | ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU |
| G3BP1 | 22 | 14282 | 0.055421687 | 0.0206989801 | 1.420891 | ACCCGC,AUCCGC,CAUCCG,CCAGGC,CCAUAG,CCAUCC,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCGCC,CCCGGC,CCGCCC,CCGGCC,CGGCAG,CGGCCC,CGGCCG,UCGGCA | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
| HNRNPCL1 | 2 | 2062 | 0.007228916 | 0.0029897078 | 1.273775 | AUUUUU,UUUUUG | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| RBM3 | 2 | 2152 | 0.007228916 | 0.0031201361 | 1.212170 | AUACGA,GAUACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| CPEB2 | 2 | 2261 | 0.007228916 | 0.0032780993 | 1.140920 | AUUUUU,CAUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| RALY | 1 | 1553 | 0.004819277 | 0.0022520629 | 1.097570 | UUUUUG | UUUUUC,UUUUUG,UUUUUU |
| SRSF1 | 120 | 99563 | 0.291566265 | 0.1442885423 | 1.014867 | ACAGAG,ACGACG,AGAGGA,AGCAGG,AGCCGA,AGCGAG,AGCGGU,AGGACC,AGGAGA,AGGCGA,AGUCGG,AUACGA,CAGAGG,CAGCCG,CAGUCG,CCAGCC,CCAGGA,CCAGGG,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCUGC,CCGACA,CCGAGC,CCGCCA,CCGCCC,CCGCGC,CCGCUA,CCGGAC,CCGGAG,CCGGCC,CCGGCG,CCGGGG,CCGUCG,CGAAGC,CGACAG,CGACGG,CGAGCA,CGCAGG,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCGCA,CGCGCC,CGCGGA,CGCUAU,CGCUCC,CGCUCG,CGCUGC,CGGAAG,CGGACG,CGGAGC,CGGCAG,CGGCCC,CGGCCG,CGGCGC,CGGGCG,CGGGGG,CGUGCG,CUCCGG,CUCGUG,CUGAGC,GAAGCU,GACAGA,GACCCG,GACGCG,GACGGA,GAGACA,GAGCAG,GAGCGA,GAGCGG,GAGGAG,GAGGAU,GAUACG,GAUGAU,GCAGGC,GCCCCG,GCCCGG,GCCGGA,GCGCCA,GCGCCC,GCGCCG,GCGGAA,GCGGAG,GCGGUU,GCUCCG,GGAGAC,GGAGCA,GGAGCC,GGAGCG,GGAUGA,GGCCGA,GGCCGG,GGCGGA,GGGCCG,UCGGGC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGA,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| FXR2 | 1 | 29 | 0.09090909 | 0.001964894 | 5.531901 | GACGGA | AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA |
| SRSF9 | 1 | 134 | 0.09090909 | 0.008842023 | 3.361976 | GGAGCA | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| SRSF1 | 4 | 625 | 0.22727273 | 0.041000786 | 2.470701 | CGACGG,CGGAGC,GACGGA,GGAGCA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 2 | 479 | 0.13636364 | 0.031438302 | 2.116864 | ACGGAG,GACGGA | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SUPV3L1 | 1 | 31 | 0.004761905 | 0.0001612253 | 4.884389 | CCGCCC | CCGCCC |
| RBM25 | 2 | 53 | 0.007142857 | 0.0002720677 | 4.714464 | UCGGGC | AUCGGG,CGGGCA,UCGGGC |
| FXR1 | 2 | 69 | 0.007142857 | 0.0003526804 | 4.340068 | ACGACG,AUGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| PABPN1 | 6 | 178 | 0.016666667 | 0.0009018541 | 4.207928 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| RBM14 | 1 | 53 | 0.004761905 | 0.0002720677 | 4.129501 | GCGCGG | CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG |
| CNOT4 | 1 | 65 | 0.004761905 | 0.0003325272 | 3.839994 | GACAGA | GACAGA |
| SRSF11 | 1 | 82 | 0.004761905 | 0.0004181782 | 3.509349 | AAGAAG | AAGAAG |
| PPRC1 | 2 | 127 | 0.007142857 | 0.0006449012 | 3.469351 | GGCGCG,GGGCGC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| RBMY1A1 | 1 | 95 | 0.004761905 | 0.0004836759 | 3.299426 | ACAAGA | ACAAGA,CAAGAC |
| HNRNPM | 3 | 222 | 0.009523810 | 0.0011235389 | 3.083489 | GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| PABPC4 | 7 | 462 | 0.019047619 | 0.0023327287 | 3.029520 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| SART3 | 12 | 777 | 0.030952381 | 0.0039197904 | 2.981202 | AAAAAA,AGAAAA,GAAAAA,GAAAAC | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| TRA2A | 15 | 1133 | 0.038095238 | 0.0057134220 | 2.737184 | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAGA,GAAAGA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SAMD4A | 10 | 790 | 0.026190476 | 0.0039852882 | 2.716286 | CGGGAA,CGGGCC,CUGGAA,CUGGCC,GCUGGA,GCUGGC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| EIF4B | 2 | 226 | 0.007142857 | 0.0011436921 | 2.642803 | CUCGGA,UCGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| IGHMBP2 | 3 | 350 | 0.009523810 | 0.0017684401 | 2.429061 | AAAAAA | AAAAAA |
| PABPC5 | 5 | 596 | 0.014285714 | 0.0030078597 | 2.247764 | AGAAAA | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| PABPC1 | 12 | 1321 | 0.030952381 | 0.0066606207 | 2.216322 | AAAAAA,AGAAAA,GAAAAA,GAAAAC | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| PABPC3 | 2 | 310 | 0.007142857 | 0.0015669085 | 2.188580 | AAAACC,GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| ERI1 | 1 | 228 | 0.004761905 | 0.0011537686 | 2.045185 | UUUCAG | UUCAGA,UUUCAG |
| TUT1 | 1 | 230 | 0.004761905 | 0.0011638452 | 2.032640 | CGAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| HNRNPAB | 2 | 351 | 0.007142857 | 0.0017734784 | 2.009919 | AGACAA,GACAAA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| SRSF10 | 24 | 2937 | 0.059523810 | 0.0148024990 | 2.007626 | AAAAGA,AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGACAA,AGAGGG,GAAAGA,GACAAA,GAGACA,GAGGGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| HNRNPH3 | 20 | 2496 | 0.050000000 | 0.0125806127 | 1.990726 | AAUGUG,AGGGAA,CGGGGG,GAAUGU,GGAAUG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UCGGGC,UUGGGU | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| FXR2 | 5 | 730 | 0.014285714 | 0.0036829907 | 1.955624 | AGACAA,GACAAA,GACAGA,UGACAG | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| TRA2B | 10 | 1447 | 0.026190476 | 0.0072954454 | 1.843974 | AAAGAA,AAGAAG,AGAAGA,AGGAAA,GAAAGA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| RBM3 | 3 | 541 | 0.009523810 | 0.0027307537 | 1.802240 | AUACGA,GAAACU,GAUACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | GGUAGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| HNRNPU | 7 | 1136 | 0.019047619 | 0.0057285369 | 1.733372 | AAAAAA,GGGGGG,UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| HNRNPH2 | 21 | 3198 | 0.052380952 | 0.0161174929 | 1.700415 | AAUGUG,AGGGAA,CGGGGG,GAAUGU,GGAAUG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UCGGGC,UGGGGG,UUGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPH1 | 21 | 3406 | 0.052380952 | 0.0171654575 | 1.609534 | AAUGUG,AGGGAA,CGGGGG,GAAUGU,GGAAUG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UCGGGC,UGGGGG,UUGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPF | 20 | 3360 | 0.050000000 | 0.0169336961 | 1.562031 | AAUGUG,AGGGAA,AUGGGA,CGAUGG,CGGGGG,GAAUGU,GAUGGG,GGAAUG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| ZNF638 | 3 | 646 | 0.009523810 | 0.0032597743 | 1.546767 | CGUUCU,GGUUCG,GUUCUU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| AGO2 | 3 | 677 | 0.009523810 | 0.0034159613 | 1.479247 | AAAAAA | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | AGGAGC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| ESRP2 | 3 | 731 | 0.009523810 | 0.0036880290 | 1.368689 | GGGAAA,GGGAAG | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| SRSF4 | 2 | 558 | 0.007142857 | 0.0028164047 | 1.342647 | AAGAAG,AGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| FUS | 8 | 1711 | 0.021428571 | 0.0086255542 | 1.312847 | AAAAAA,CGGUGA,GGGGGG,UUUUUU | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| SRSF1 | 107 | 20925 | 0.257142857 | 0.1054312777 | 1.286267 | AAAAGA,AAAGAA,AAGAAG,AAGACC,AAGAGG,ACAGAA,ACAGAG,ACAGGA,ACGACG,AGAAGA,AGACAA,AGAGGG,AGCAGG,AGGAAA,AGGAGA,AGGAGC,AUACGA,AUGACA,CACAGA,CAGAGG,CCACAG,CCAGGG,CCAUGA,CCCAGG,CCCCGG,CCCGGG,CCCUGG,CCGCCC,CCGCCG,CCGGGA,CCGGGG,CCGUCC,CCGUCG,CCUCCG,CCUCGG,CCUGGA,CCUGGG,CGACGG,CGAUGG,CGCAGG,CGCCCA,CGCCGC,CGCCGU,CGCGGU,CGCUGG,CGGACC,CGGGCC,CGGGGC,CGGGGG,CUCGGA,GAAAGA,GAACAG,GAAGAC,GAAGCA,GACAGA,GACCCA,GAGACA,GAGCAG,GAGGGA,GAUACG,GCAGGA,GCAGGU,GCCCAC,GCCCCG,GCCCGG,GCCGGG,GCGAGC,GCGCGG,GCGGCA,GCUGGA,GGAAAG,GGAACA,GGAAUG,GGAGAC,GGAGCA,GGAGCU,GGAGGC,GGCCCG,GGCCGG,GGCGCG,GGGCGA,GGGGCA,GGGGCG,GGGGGG,GGUCGG,GUGACA,UCGGGC,UGACAG,UGAGUU | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
| SYNCRIP | 4 | 1041 | 0.011904762 | 0.0052498992 | 1.181177 | AAAAAA,UUUUUU | AAAAAA,UUUUUU |
| NELFE | 4 | 1059 | 0.011904762 | 0.0053405885 | 1.156468 | CUGGCU,GGUCUC,GUCUCU,UCUCUC | CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA |
| SRSF5 | 6 | 1578 | 0.016666667 | 0.0079554615 | 1.066948 | AAGAAG,AGAAGA,CACAGA,CCGCAG,CGCAGG,UACAGC | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.