ENSG00000198589:-:4:150415437:150435708

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198589:-:4:150415437:150435708 ENSG00000198589 ENST00000357115 - 4 150415438 150435708 273 GAACCCUUUACAACUUAUUUCCUAAAUUUGCAAGGAGGCAAAUUUGAUCAUGCAGAUCGAACUUUUUCAUCAAUUUCCAGAGCUUGGCGAAACAGUCAGCGUGAUACCUCUGAUAUUAAGGAGUUGAUCCCUGAAUUUUAUUAUCUCCCUGAGAUGUUUGUCAACUUCAAUAAUUAUAAUCUUGGAGUGAUGGAUGAUGGGACAGUAGUGUCUGAUGUCGAACUUCCUCCUUGGGCCAAAACCUCAGAAGAAUUUGUUCACAUAAACAGAUUGGAACCCUUUACAACUUAUUUCCUAAAUUUGCAAGGAGGCAAAUUUGAUCA circ
ENSG00000198589:-:4:150415437:150435708 ENSG00000198589 ENST00000357115 - 4 150415438 150435708 22 UAAACAGAUUGGAACCCUUUAC bsj
ENSG00000198589:-:4:150415437:150435708 ENSG00000198589 ENST00000357115 - 4 150435699 150435908 210 UAUUUAGAAAUAUUUCUUUUGAGGGAAAAAUAACUUGAGAACAUUAAUGUAAUAAUUUAGAUAUAAUUCUCAUUAUAUACCUAGUUUAUAUUACUAGUGAAUGCCUAUUAGUCAUUAAAGUAUUUAGUUCUAAGAAUUUAUAAAAACCACAUUUUUAUGCCUGAGGGAACAUAUGGAUUUUUUUAAUUGCUAUUUUUUAGGAACCCUUUA ie_up
ENSG00000198589:-:4:150415437:150435708 ENSG00000198589 ENST00000357115 - 4 150415238 150415447 210 AAACAGAUUGGUAAGAUAAUAAUCAUCUACUCUGUCUGUCAUGAGCUUUUGCUCAAAGCAUCUUUCAUGUGUUGGUGUAUAAUCAUUAACCCUUGCUCUUCUGGACAAAGCUGUAGGUGAUAGGACUAACUGAAAGUGACAUAAUAGCUCAAGAAUCCUUGUAUAUACUUUAUGAAAUGUUAUUGAAUUGAUAUAUAAAGUAAUAGUUUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 2 739 0.010989011 0.001072411 3.357132 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 2 1179 0.010989011 0.001710061 2.683942 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
A1CF 3 1642 0.014652015 0.002381042 2.621434 AUAAUU,UAAUUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM28 1 822 0.007326007 0.001192695 2.618802 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ZFP36L2 2 1277 0.010989011 0.001852083 2.568841 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA3 3 2140 0.014652015 0.003102746 2.239482 AAGGAG,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
CELF1 3 2391 0.014652015 0.003466496 2.079549 GUUUGU,UGUCUG,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPN1 1 1222 0.007326007 0.001772376 2.047342 AGAAGA AAAAGA,AGAAGA
PABPC3 1 1234 0.007326007 0.001789767 2.033255 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ELAVL3 3 2867 0.014652015 0.004156317 1.817721 AUUUUA,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
U2AF2 1 1477 0.007326007 0.002141923 1.774120 UUUUUC UUUUCC,UUUUUC,UUUUUU
YBX2 1 1480 0.007326007 0.002146271 1.771195 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM46 5 4554 0.021978022 0.006601124 1.735278 AUCAAU,AUCAUG,AUGAUG,GAUCAU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RALY 1 1553 0.007326007 0.002252063 1.701780 UUUUUC UUUUUC,UUUUUG,UUUUUU
G3BP2 1 1644 0.007326007 0.002383941 1.619679 GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TIAL1 11 10182 0.043956044 0.014757244 1.574638 AAAUUU,AAUUUU,AUUUUA,CUUUUU,UAAAUU,UUAUUU,UUUAUU,UUUUAU,UUUUCA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 19 18315 0.073260073 0.026543620 1.464662 AAAUUU,AAUAAU,AAUUAU,AAUUUU,AUAAUU,AUAUUA,AUUAUA,AUUUUA,UAAAUU,UAAUUA,UAUAAU,UAUUAA,UAUUAU,UUAUAA,UUAUUA,UUAUUU,UUUAUU,UUUUAU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
KHDRBS2 1 1858 0.007326007 0.002694070 1.443240 AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPD 2 2837 0.010989011 0.004112841 1.417854 UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
CSTF2 1 1967 0.007326007 0.002852033 1.361036 UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPCL1 1 2062 0.007326007 0.002989708 1.293023 CUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SNRPA 6 7380 0.025641026 0.010696574 1.261305 AGUAGU,AUACCU,CAGUAG,GAUACC,GUAGUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
CPEB2 1 2261 0.007326007 0.003278099 1.160168 CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPC 2 3471 0.010989011 0.005031636 1.126962 CUUUUU,UUUUUC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM24 1 2357 0.007326007 0.003417223 1.100203 GAGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SF1 3 4931 0.014652015 0.007147474 1.035594 ACAGUC,ACUUAU,CAGUCA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SRSF4 2 3740 0.010989011 0.005421472 1.019305 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
EIF4B 1 5 0.09090909 0.0003929788 7.853829 UUGGAA CUUGGA,UCGGAA,UUGGAA,UUGGAC
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 GGAACC AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
SRSF2 1 479 0.09090909 0.0314383023 1.531901 GGAACC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 7 217 0.019047619 0.001098347 4.116204 AUAUAC,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 4 221 0.011904762 0.001118501 3.411901 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPA0 3 200 0.009523810 0.001012696 3.233337 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
QKI 9 904 0.023809524 0.004559653 2.384543 AAUCAU,ACUAAC,AUCUAC,AUUAAC,CUACUC,UAAUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 7 764 0.019047619 0.003854293 2.305073 GUAUAU,UAGAUA,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 20 2172 0.050000000 0.010948206 2.191234 AAUAUU,AAUGUU,ACAUAA,AGAAUU,AGAUAA,CUUGUA,GAAUUG,GUAAUA,GUAUAU,UAAUGU,UAGAUA,UAUAUA,UGUAAU,UGUAUA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC3 2 310 0.007142857 0.001566909 2.188580 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
MATR3 1 216 0.004761905 0.001093309 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SRP14 1 218 0.004761905 0.001103386 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBMS3 4 562 0.011904762 0.002836558 2.069326 AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPAB 2 351 0.007142857 0.001773478 2.009919 ACAAAG,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
A1CF 4 598 0.011904762 0.003017936 1.979904 AUAAUU,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PPIE 56 9262 0.135714286 0.046669690 1.540015 AAAAAU,AAAAUA,AAAUAA,AAAUAU,AAUAAU,AAUAUU,AAUUUA,AUAAAA,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUUAU,AUUUUU,UAAAAA,UAAUAA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UUAAUU,UUAUAA,UUAUAU,UUUAAU,UUUAUA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM41 2 502 0.007142857 0.002534260 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 3 677 0.009523810 0.003415961 1.479247 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM28 1 340 0.004761905 0.001718057 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CPEB4 3 691 0.009523810 0.003486497 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.003486497 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.003486497 1.449760 UUUUUU UUUUUU
NONO 1 364 0.004761905 0.001838976 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
KHDRBS3 8 1646 0.021428571 0.008298065 1.368689 AAAUAA,AGAUAA,AUAAAA,AUAAAG,AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CPEB2 7 1487 0.019047619 0.007496977 1.345230 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPD 7 1488 0.019047619 0.007502015 1.344261 AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAGGA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZFP36L2 3 774 0.009523810 0.003904676 1.286336 AUUUAU,UAUUUA AUUUAU,UAUUUA,UUAUUU,UUUAUU
ELAVL2 49 9826 0.119047619 0.049511286 1.265709 AAUUUA,AUACUU,AUAUUU,AUUUAG,AUUUAU,AUUUUU,CAUUUU,GAUUUU,UAAUUU,UACUUU,UAUACU,UAUAUA,UAUAUU,UAUUGA,UAUUUA,UAUUUU,UCUUUU,UUAAUU,UUAGUU,UUAUAU,UUAUUG,UUCUUU,UUGUAU,UUUAAU,UUUAGU,UUUAUA,UUUAUG,UUUCAU,UUUCUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.006962918 1.259202 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.003007860 1.247764 AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPC 9 2006 0.023809524 0.010111850 1.235492 AUUUUU,UUUUUA,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS2 4 1051 0.011904762 0.005300282 1.167398 AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZNF638 2 646 0.007142857 0.003259774 1.131729 GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SF1 5 1294 0.014285714 0.006524587 1.130615 ACUAAC,AUUAAC,GACUAA,UACUAG,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM46 4 1091 0.011904762 0.005501814 1.113560 AAUCAU,AUCAUU,AUGAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF1 4 1097 0.011904762 0.005532044 1.105654 CUGUCU,GUGUUG,UGUCUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF5 2 669 0.007142857 0.003375655 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPDL 11 2689 0.028571429 0.013553003 1.075961 AAUUUA,ACAUUA,ACUAAC,ACUUUA,AGAUAU,CCUUGC,CCUUUA,CUAACU,GGACUA,UUUAGG AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
ELAVL4 12 2916 0.030952381 0.014696695 1.074559 AUUUAU,UAUUUA,UAUUUU,UUGUAU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPA2B1 8 2033 0.021428571 0.010247884 1.064210 AAUUUA,AGAUAU,AGGAAC,CAAGAA,GGAACC,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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