ENSG00000198162:+:1:117402185:117420649

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198162:+:1:117402185:117420649 ENSG00000198162 ENST00000356554 + 1 117402186 117420649 553 GGAAGAGGAAGAACGUCUGAGAAAUAAAAUUCGAGCUGAUCAUGAGAAGGCCUUGGAAGAAGCAAAAGAAAAAUUAAGAAAGUCAAGAGAGGAAAUUCGAGCAGAAAUUCAGACAGAGAAAAAUAAGGUAGUCCAAGAAAUGAAGAUAAAAGAGAACAAGCCACUGCCACCAGUCCCUAUUCCCAACCUUGUAGGAAUACGUGGUGGAGACCCAGAAGAUAAUGACAUAAGAGAGAAAAGGGAAAAAAUUAAAGAGAUGAUGAAACAUGCUUGGGAUAACUAUAGGACAUAUGGGUGGGGACAUAAUGAACUCAGACCUAUUGCAAGGAAAGGACACUCCCCUAACAUAUUUGGAAGUUCACAAAUGGGUGCUACCAUAGUAGAUGCUUUGGAUACCCUUUAUAUCAUGGGACUUCAUGAUGAAUUCCUAGAUGGGCAAAGAUGGAUUGAAGACAACCUUGAUUUCAGUGUGAAUUCAGAGGUGUCUGUGUUUGAAGUCAACAUUCGAUUUAUUGGAGGCCUACUUGCAGCAUAUUACCUAUCAGGAGAGGAGGGAAGAGGAAGAACGUCUGAGAAAUAAAAUUCGAGCUGAUCAUGAGAAGG circ
ENSG00000198162:+:1:117402185:117420649 ENSG00000198162 ENST00000356554 + 1 117402186 117420649 22 CAGGAGAGGAGGGAAGAGGAAG bsj
ENSG00000198162:+:1:117402185:117420649 ENSG00000198162 ENST00000356554 + 1 117401986 117402195 210 AGUUUGAUCUUAGGCAUCCAGGGUUCCUUUUCUUUCUCAUUCCAGAUCUGAAUGUGUCUCACUGAUAAUUCUUUCCUUUUAAUGGCAAAAGUAGAAAACAAGUUCCUGGGUUUAAUGGAGAAACCUUUAUGUUUUAUAUUUAAAGGUUGACAUUCUUAAGUAGGCUCACUGUUACGUUUUAUUUCCUUCUUUUCUCACAGGGAAGAGGAA ie_up
ENSG00000198162:+:1:117402185:117420649 ENSG00000198162 ENST00000356554 + 1 117420640 117420849 210 AGGAGAGGAGGUGAGCAAAAUCAAGCAAUGCAUUGUUUGUUUUGGAGGGGAGGGUUGGAAUUUAAUAAAAUGAACAAUUUCCCUAGAAGCAUAUUAGUUUUCUAAAUUGGUAAUAUUGAACCAGUCUAGAACUGGUUGCUUCAGGCAGAACUAUUCCUUGGGAAUAAUAAUUUUUCCAUUUUGAGGCUCUCAAUAAAACAUGAAUUCAUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 314 0.003616637 0.0004564992 2.985964 GACAGA GACAGA
ERI1 3 632 0.007233273 0.0009173461 2.979111 UUCAGA,UUUCAG UUCAGA,UUUCAG
AGO1 2 548 0.005424955 0.0007956130 2.769472 AGGUAG,GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
NONO 7 1498 0.014466546 0.0021723567 2.735388 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
FXR1 1 411 0.003616637 0.0005970720 2.598672 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PABPC5 10 2400 0.019891501 0.0034795387 2.515184 AGAAAA,AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SNRPB2 3 991 0.007233273 0.0014376103 2.330976 AUUGCA,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM28 2 822 0.005424955 0.0011926949 2.185386 AGUAGA,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
EIF4B 3 1179 0.007233273 0.0017100607 2.080601 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 3 1222 0.007233273 0.0017723764 2.028964 AAAAGA,AGAAGA AAAAGA,AGAAGA
SRSF10 42 13860 0.077757685 0.0200874160 1.952693 AAAAGA,AAAGAA,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AGACAA,AGAGAA,AGAGAG,AGAGGA,CAAAGA,GAGAAA,GAGAAC,GAGAAG,GAGACC,GAGAGA,GAGAGG,GAGGAA,GAGGAG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBM46 13 4554 0.025316456 0.0066011240 1.939292 AAUGAA,AUCAUG,AUGAAA,AUGAAG,AUGAAU,AUGAUG,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SART3 7 2634 0.014466546 0.0038186524 1.921585 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF4 10 3740 0.019891501 0.0054214720 1.875396 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
KHDRBS3 9 3429 0.018083183 0.0049707696 1.863107 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUUAAA,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SRSF11 1 688 0.003616637 0.0009985015 1.856812 AAGAAG AAGAAG
KHDRBS2 4 1858 0.009041591 0.0026940701 1.746789 AAUAAA,AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
TRA2A 17 6871 0.032549729 0.0099589296 1.708583 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZCRB1 3 1605 0.007233273 0.0023274215 1.635916 AAUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 1 813 0.003616637 0.0011796520 1.616287 AAAAAA AAAAAA
ZFP36L2 2 1277 0.005424955 0.0018520827 1.550463 AUUUAU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBMS3 2 1283 0.005424955 0.0018607779 1.543705 CUAUAG,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPC1 9 4443 0.018083183 0.0064402624 1.489457 AAAAAA,ACAAAU,AGAAAA,CUAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPAB 3 1782 0.007233273 0.0025839306 1.485081 AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
MSI1 5 2770 0.010849910 0.0040157442 1.433944 AGGAAG,AGGAGG,AGGUAG,UAGGAA,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
CELF5 2 1415 0.005424955 0.0020520728 1.402529 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TRA2B 14 7329 0.027124774 0.0106226650 1.352465 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
CSTF2 3 1967 0.007233273 0.0028520334 1.342658 GUGUUU,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPM 1 999 0.003616637 0.0014492040 1.319388 AAGGAA AAGGAA,GAAGGA,GGGGGG
SRSF7 27 14481 0.050632911 0.0209873716 1.270554 AAAGGA,AAGAAG,AAGGAC,AGAAGA,AGAGAA,AGAGAG,AGAGAU,AGAGGA,AGGAAG,AGGACA,CAGAGA,CUGAGA,GAAGAA,GAAGGC,GAGAGA,GAGGAA,GAUUGA,UCAACA,UCGAUU AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
ZRANB2 5 3173 0.010849910 0.0045997733 1.238048 AGGGAA,AGGUAG,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ENOX1 5 3195 0.010849910 0.0046316558 1.228083 AAGACA,AGACAG,AGGACA,CAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
IGF2BP3 8 4815 0.016274864 0.0069793662 1.221478 AAAUUC,AACUCA,AAUUCA,ACACUC,ACAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ESRP2 3 2150 0.007233273 0.0031172377 1.214380 GGGAAA,GGGAAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
G3BP2 2 1644 0.005424955 0.0023839405 1.186263 GGAUAA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CELF4 2 1782 0.005424955 0.0025839306 1.070044 GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF1 3 2391 0.007233273 0.0034664959 1.061171 UGUCUG,UGUGUU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP2 1 14 0.09090909 0.0009824469 6.531901 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA
MSI1 1 23 0.09090909 0.0015719151 5.853829 AGGAGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG
HNRNPH3 3 61 0.18181818 0.0040607807 5.484596 AGGGAA,GGAGGG,GGGAAG AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
LIN28A 1 35 0.09090909 0.0023578727 5.268867 GGAGGG AGGAGA,AGGAGU,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG,UGGAGU
RBM5 2 56 0.13636364 0.0037332984 5.190864 AGGGAA,GAGGGA AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPH2 3 80 0.18181818 0.0053052135 5.098942 AGGGAA,GGAGGG,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPF 3 90 0.18181818 0.0059601782 4.930997 AGGGAA,GGAGGG,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 3 90 0.18181818 0.0059601782 4.930997 AGGGAA,GGAGGG,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
ZRANB2 1 45 0.09090909 0.0030128373 4.915230 AGGGAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
FMR1 1 117 0.09090909 0.0077285827 3.556149 AGGAGG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SFPQ 1 153 0.09090909 0.0100864553 3.172005 GGAGGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF10 1 160 0.09090909 0.0105449306 3.107875 GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 3 625 0.18181818 0.0410007860 2.148773 AGGAGG,GAGGGA,GGAGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG
SRSF2 1 479 0.09090909 0.0314383023 1.531901 AGGAGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
NONO 4 364 0.011904762 0.0018389762 2.694564 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
LIN28A 6 900 0.016666667 0.0045395002 1.876360 AGGAGA,GGAGAA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AUUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM4 7 1094 0.019047619 0.0055169287 1.787673 CCUUCU,CUUCUU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGAAG,GGGAAU,GGGGAG,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAGAGG,AGAGGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAACA,AAAAUC,AAAUCA,AAUUCA,ACAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPH3 11 2496 0.028571429 0.0125806127 1.183371 AAUGUG,AGGGAA,AGGGGA,GAAUGU,GAGGGG,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGGAG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,AUAAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,AUUUAA,CAAAAU,CUAAAU,GAAAAC,UAAAAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAA,AAUGAA,AUCAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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