ENSG00000066135:+:1:43655590:43689095

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000066135:+:1:43655590:43689095 ENSG00000066135 MSTRG.1029.1 + 1 43655591 43689095 1899 GUUGUUCCUCCAAAAGAGUGGAAGCCACGAGCAUCCUAUGAUGACAUUGAUGAUUUGGUCAUUCCUGCCCCCAUUCAACAGCUGGUGACGGGGCAGUCUGGCCUCUUUACUCAGUACAACAUACAGAAGAAAGCCAUGACUGUUCGAGAGUUCCGCAAGAUAGCCAAUAGCGAUAAGUACUGUACCCCACGCUAUAGUGAGUUUGAAGAGCUCGAGCGGAAAUACUGGAAAAAUCUUACAUUCAAUCCUCCAAUCUAUGGUGCAGAUGUGAAUGGUACCCUCUAUGAAAAGCAUGUUGAUGAGUGGAAUAUUGGCCGGCUGAGAACAAUCCUGGACUUGGUGGAAAAGGAGAGUGGGAUCACCAUUGAGGGUGUGAACACCCCAUACCUGUACUUUGGCAUGUGGAAGACAUCCUUUGCUUGGCACACUGAAGACAUGGACCUCUACAGCAUCAACUACCUGCACUUUGGAGAACCAAAGUCCUGGUACUCUGUUCCACCUGAGCAUGGAAAGCGGUUGGAACGCCUCGCCAAAGGCUUUUUCCCAGGAAGUGCUCAAAGCUGUGAGGCAUUUCUCCGCCACAAGAUGACCCUGAUUUCCCCGUUAAUGCUGAAGAAAUAUGGAAUUCCCUUUGACAAGGUGACUCAAGAGGCUGGAGAGUUUAUGAUCACUUUCCCUUAUGGUUACCAUGCCGGCUUUAACCAUGGUUUUAACUGUGCGGAGUCUACCAAUUUUGCUACCCGUCGGUGGAUUGAGUACGGCAAGCAAGCUGUGCUGUGCUCCUGUAGAAAGGACAUGGUGAAGAUCUCCAUGGAUGUGUUUGUGAGAAAGUUCCAGCCAGAAAGGUACAAACUUUGGAAAGCUGGGAAGGACAACACAGUUAUUGACCAUACUCUGCCCACGCCAGAAGCAGCUGAGUUUCUUAAGGAGAGUGAACUGCCUCCAAGAGCUGGCAACGAGGAGGAGUGCCCAGAGGAGGACAUGGAAGGGGUGGAGGAUGGAGAGGAAGGAGACCUGAAGACAAGCCUGGCCAAGCACCGAAUAGGGACAAAGAGGCACCGAGUUUGUCUUGAAAUACCACAGGAGGUGAGUCAGAGUGAGCUCUUCCCCAAGGAGGAUCUGAGUUCUGAGCAGUAUGAGAUGACGGAGUGCCCGGCAGCCCUCGCCCCUGUGAGGCCCACCCAUAGCUCUGUGCGGCAAGUUGAGGAUGGUCUUACCUUCCCAGAUUAUUCUGACUCCACUGAAGUCAAAUUUGAAGAGCUUAAAAAUGUCAAACUAGAAGAGGAGGAUGAGGAGGAAGAACAAGCAGCAGCUGCCUUGGAUCUUUCUGUGAAUCCUGCGUCUGUAGGGGGACGCCUUGUCUUCUCAGGCUCCAAAAAGAAAUCAUCUUCUAGCCUGGGCUCUGGCUCUUCACGGGAUUCUAUCUCUUCUGAUUCAGAAACUAGUGAGCCUCUCUCCUGCCGAGCCCAAGGGCAAACGGGAGUUCUCACUGUGCACAGUUAUGCCAAAGGGGAUGGCAGGGUCACUGUGGGAGAGCCAUGCACGAGGAAGAAAGGAAGCGCCGCUAGAAGUUUCAGUGAGCGGGAGCUGGCAGAGGUUGCAGAUGAAUACAUGUUUUCCCUAGAAGAGAAUAAGAAGUCCAAGGGACGCCGUCAGCCUUUAAGCAAGCUCCCCCGCCAUCACCCACUUGUGCUGCAGGAGUGUGUCAGUGAUGAUGAGACAUCUGAACAGCUGACCCCUGAGGAAGAGGCUGAGGAGACAGAGGCCUGGGCCAAGCCUCUGAGCCAACUGUGGCAGAACCGACCUCCAAACUUUGAGGCUGAGAAGGAAUUCAAUGAGACCAUGGCCCAACAGGCCCCUCACUGCGCUGUCUGUAUGAUCUUCCAGACUUAUCAUCAGGUUGUUCCUCCAAAAGAGUGGAAGCCACGAGCAUCCUAUGAUGACAUUGA circ
ENSG00000066135:+:1:43655590:43689095 ENSG00000066135 MSTRG.1029.1 + 1 43655591 43689095 22 CUUAUCAUCAGGUUGUUCCUCC bsj
ENSG00000066135:+:1:43655590:43689095 ENSG00000066135 MSTRG.1029.1 + 1 43655391 43655600 210 CAAUUAGGCAGCUGGUUGGUGGCAAAAGUGGAUCAGGGUUAGCAUGCCUGUGACUUACUGUGUUUUGGUGAAUGUGGGUAAAUCAAAGUAACUGUCUAGUAAAAUUGACUGUUAGGUUGGCUGGUAACUACAUGCUUCCUGGACUCUGACUGGCUUGCCAGGUUUCUCAUCUGUCUUUUUGUUUCUUGUGUUCCCUUCAGGUUGUUCCUC ie_up
ENSG00000066135:+:1:43655590:43689095 ENSG00000066135 MSTRG.1029.1 + 1 43689086 43689295 210 UUAUCAUCAGGUAACCCAGCUCCAUGCACUCUGUUUACCCAGGACCAGCAAUCAUAGGGAAGCUAGAUUUAAUUGUGAGUAUAUAGCUUGUCACUGGUUGUCUUGGGAAAGGCCACCUCCACCCCCAGCAUUCUCUGCCCCAUCUGUGUAUUGGUCAGUCUUCUCCAGGCAGAUAACCCAGCAACGUGGGUUUCAAUUGAGAAUGCUUUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 3 314 0.002106372 0.0004564992 2.206076 AUAGGG,GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
PTBP2 1 267 0.001053186 0.0003883867 1.439195 CUCUCU CUCUCU
FXR1 2 411 0.001579779 0.0005970720 1.403746 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBM24 14 2357 0.007898894 0.0034172229 1.208826 AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGU,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CNOT4 1 314 0.001053186 0.0004564992 1.206076 GACAGA GACAGA
SRSF4 22 3740 0.012111638 0.0054214720 1.159637 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
IGF2BP1 4 831 0.002632965 0.0012057377 1.126772 AAGCAC,ACCCGU,AGCACC,CCCGUU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
NONO 8 1498 0.004739336 0.0021723567 1.125424 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPM 5 999 0.003159558 0.0014492040 1.124462 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TRA2A 40 6871 0.021590311 0.0099589296 1.116321 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRP14 4 847 0.002632965 0.0012289250 1.099291 CCUGUA,CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
TUT1 3 678 0.002106372 0.0009840095 1.098016 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBFOX1 5 1077 0.003159558 0.0015622419 1.016105 AGCAUG,GCAUGU,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZNF638 1 12 0.09090909 0.000851454 6.738352 GGUUGU CGUUCG,CGUUCU,CGUUGG,GGUUCU,GGUUGG,GUUCUU,GUUGGU,UGUUCU,UGUUGG,UGUUGU
DAZAP1 1 36 0.09090909 0.002423369 5.229338 AGGUUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
SRSF2 1 479 0.09090909 0.031438302 1.531901 GGUUGU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 UCAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG UGACUG,UGCAUG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX1 4 287 0.011904762 0.0014510278 3.036392 AGCAUG,GCAUGC,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 AUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ZNF638 6 646 0.016666667 0.0032597743 2.354122 GGUUGG,GGUUGU,GUUGGU,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
A1CF 4 598 0.011904762 0.0030179363 1.979904 AGUAUA,GAUCAG,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAG,UAUAGC,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
YBX1 8 1321 0.021428571 0.0066606207 1.685807 AUCAUC,CAGCAA,CAUCUG,CCAGCA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
TARDBP 6 1034 0.016666667 0.0052146312 1.676328 GAAUGU,GUGAAU,GUUGUU,GUUUUG,UGAAUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CCCUUC,UCCCUU,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGAC,CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AUUUAA,GACUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZRANB2 7 1360 0.019047619 0.0068571141 1.473937 AGGGAA,AGGUAA,AGGUUU,GGGUAA,GGUAAA,UGGUAA,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
NELFE 5 1059 0.014285714 0.0053405885 1.419503 CUGGCU,CUGGUU,GGUUAG,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGAAG,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CELF1 5 1097 0.014285714 0.0055320435 1.368689 CUGUCU,UGUGUU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,GUAUAU,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAA,AAUCAU,AUCAAA,AUCAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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