ENSG00000044115:+:5:138781922:138783372

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000044115:+:5:138781922:138783372 ENSG00000044115 ENST00000627109 + 5 138781923 138783372 303 AAAUGACUGCUGUCCAUGCAGGCAACAUAAACUUCAAGUGGGAUCCUAAAAGUCUAGAGAUCAGGACUCUGGCAGUUGAGAGACUGUUGGAGCCUCUUGUUACACAGGUUACAACCCUUGUAAACACCAAUAGUAAAGGGCCCUCUAAUAAGAAGAGAGGUCGUUCUAAGAAGGCCCAUGUUUUGGCUGCAUCUGUUGAACAAGCAACUGAGAAUUUCUUGGAGAAGGGGGAUAAAAUUGCGAAGGAGAGCCAGUUUCUCAAGGAGGAGCUUGUGGCUGCUGUAGAAGAUGUUCGAAAACAAGAAAUGACUGCUGUCCAUGCAGGCAACAUAAACUUCAAGUGGGAUCCUAAA circ
ENSG00000044115:+:5:138781922:138783372 ENSG00000044115 ENST00000627109 + 5 138781923 138783372 22 UCGAAAACAAGAAAUGACUGCU bsj
ENSG00000044115:+:5:138781922:138783372 ENSG00000044115 ENST00000627109 + 5 138781723 138781932 210 CCUAUUUGUAAGCCUGAAAUCAUUAAAUAUUAAGAGGUUGUAAGGUUUACUGGGUCUUCAUGUGUAGGCUAGUUAGAAUUUUUUCAUCUAUAGUGAAUAUAGCUUUCCUGAUGCAAAAGUCCCAAAGUAGGAGAAGAUUUGUUACAUAUUUCAUGUUUGUGUUUGAUGUUUGCCUGACUGACUUUUUGUUUCUUAUUUAGAAAUGACUGC ie_up
ENSG00000044115:+:5:138781922:138783372 ENSG00000044115 ENST00000627109 + 5 138783363 138783572 210 CGAAAACAAGGUAGGUCAUUACUGCUUUUUAGGUAAAGAGAGGCAGGCCUUUCUAGAAAAUCAGUGUUUGAAGAUUUUUUUUGUGGUCAGUAUUCUCAUUCUUAUGCUUGCCAAUUGCUCAGUAACUUACUUAGUUAUUGGAGAUGUAUUAAGUUGGACUGGCUCAUAUUUUAAUUCUCAUUCUUAUGCUUGCCAGUUGCUCAGUAACUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 1 452 0.00660066 0.0006564894 3.329767 UGACUG UGACUG,UGCAUG
SRSF11 2 688 0.00990099 0.0009985015 3.309736 AAGAAG AAGAAG
RBMY1A1 1 489 0.00660066 0.0007101099 3.216496 ACAAGA ACAAGA,CAAGAC
SSB 3 1260 0.01320132 0.0018274462 2.852781 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA3 5 2140 0.01980198 0.0031027457 2.674027 AAGGAG,AGGAGC,CAAGGA,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
EIF4B 2 1179 0.00990099 0.0017100607 2.533525 CUUGGA,GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 2 1222 0.00990099 0.0017723764 2.481888 AGAAGA AAAAGA,AGAAGA
RBM28 1 822 0.00660066 0.0011926949 2.468385 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC3 2 1234 0.00990099 0.0017897669 2.467801 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SRP14 1 847 0.00660066 0.0012289250 2.425213 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
ZNF638 3 1773 0.01320132 0.0025708878 2.360344 CGUUCU,UGUUCG,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IFIH1 1 904 0.00660066 0.0013115296 2.331360 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
KHDRBS2 3 1858 0.01320132 0.0026940701 2.292823 AUAAAA,AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPM 1 999 0.00660066 0.0014492040 2.187350 GAAGGA AAGGAA,GAAGGA,GGGGGG
RBFOX1 1 1077 0.00660066 0.0015622419 2.078992 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TRA2B 11 7329 0.03960396 0.0106226650 1.898499 AAGAAG,AAUAAG,AGAAGA,AGAAGG,AUAAGA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SNRNP70 1 1237 0.00660066 0.0017941145 1.879338 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PUM2 2 1890 0.00990099 0.0027404447 1.853163 UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CSTF2 2 1967 0.00990099 0.0028520334 1.795582 GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPA2B1 12 8607 0.04290429 0.0124747476 1.782111 AAGAAG,AAGGAG,AAGGGG,AGGAGC,CAAGAA,CAAGGA,CGAAGG,GAAGGA,GCGAAG,GGAGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
SRSF4 4 3740 0.01650165 0.0054214720 1.605854 AAGAAG,AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
NONO 1 1498 0.00660066 0.0021723567 1.603349 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZRANB2 3 3173 0.01320132 0.0045997733 1.521048 AGGUUA,GUAAAG,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
KHDRBS1 4 4064 0.01650165 0.0058910141 1.486022 AUAAAA,CUAAAA,GAAAAC,UAAAAG AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBMX 5 4925 0.01980198 0.0071387787 1.471896 AAGAAG,AGAAGG,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
A1CF 1 1642 0.00660066 0.0023810421 1.471017 GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 1 1644 0.00660066 0.0023839405 1.469262 GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PUM1 6 5823 0.02310231 0.0084401638 1.452694 ACAUAA,AGAAUU,CUUGUA,UGUAAA,UGUAGA,UGUCCA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPL 5 5085 0.01980198 0.0073706513 1.425781 AAACAA,AAACAC,ACACCA,ACAUAA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
SRSF7 16 14481 0.05610561 0.0209873716 1.418624 AAGAAG,AGAAGA,AGAGAC,AGAGAG,AGAGAU,AGAUCA,CUAGAG,CUGAGA,GAAGGC,GAGACU,GAGAGA,GAGAUC,UAGAGA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
KHDRBS3 3 3429 0.01320132 0.0049707696 1.409141 AUAAAA,AUAAAC,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
LIN28A 4 4315 0.01650165 0.0062547643 1.399583 AGGAGA,GGAGAA,GGAGGA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SRSF10 15 13860 0.05280528 0.0200874160 1.394390 AAAGGG,AAGAAA,AAGAAG,AAGAGA,AAGGAG,AAGGGG,AGAGAC,AGAGAG,GAGAAG,GAGAGA,GAGAGC,GAGAGG,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
MSI1 2 2770 0.00990099 0.0040157442 1.301905 AGGAGG,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
TRA2A 6 6871 0.02310231 0.0099589296 1.213975 AAGAAA,AAGAAG,AGAAGA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM5 6 6879 0.02310231 0.0099705232 1.212296 AAGGAG,AAGGGG,CAAGGA,GAAGGA,GAAGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
NELFE 2 3028 0.00990099 0.0043896388 1.173471 CUCUGG,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM4 2 3065 0.00990099 0.0044432593 1.155954 CCUCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ESRP2 1 2150 0.00660066 0.0031172377 1.082342 GGGGAU GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM3 1 2152 0.00660066 0.0031201361 1.081001 GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 7 0.09090909 0.0005239717 7.438792 ACAAGA ACAAGA,CAAGAC
PABPC5 1 18 0.09090909 0.0012444328 6.190864 AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 CAAGAA AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
TRA2A 1 54 0.09090909 0.0036023055 4.657432 AAGAAA AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZFP36 1 126 0.09090909 0.0083180508 3.450107 AAGAAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF10 1 160 0.09090909 0.0105449306 3.107875 AAGAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG UGACUG,UGCAUG
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGG,GUGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
A1CF 6 598 0.016666667 0.0030179363 2.465331 AUCAGU,CAGUAU,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
MSI1 8 961 0.021428571 0.0048468360 2.144421 AGGUAG,AGUAGG,AGUUAG,AGUUGG,UAGGAG,UAGGUA,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAG,CUAUAG,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUUU,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF1 7 1097 0.019047619 0.0055320435 1.783726 GUUUGU,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPC 12 2006 0.030952381 0.0101118501 1.614003 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,GGAGAA,GGAGAU,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AGGUAA,AGGUAG,AGGUUU,GAGGUU,GGUAAA,GUAAAG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 UCAUUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AGGAGA,AGUAGG,GGAGAU,GUAGGC,UAUGCU,UUCCUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AGGUAA,AGGUAG,AGGUUG,AGUAGG,AGUUAG,UAGGUA,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL2 43 9826 0.104761905 0.0495112858 1.081285 AAUUUU,AUAUUU,AUUUAG,AUUUUA,AUUUUU,CUUUCU,CUUUUU,GAUUUU,UAAGUU,UAGUUA,UAUUUA,UAUUUG,UAUUUU,UCUUAU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUUG,UUAUUU,UUUAAU,UUUACU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 AAUCAU,CUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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