ENSG00000083720:-:5:41840450:41862750

1. Sequences

Rows: 4

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• Select all:
• id
• gene
• transcript
• strand
• chrom
• startGR
• endGR
• length
• seq
• type

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id	gene	transcript	strand	chrom	startGR	endGR	length	seq	type
ENSG00000083720:-:5:41840450:41862750	ENSG00000083720	ENST00000196371	-	5	41840451	41862750	654	GGAUGUGUUUGUUCCUUUUCCACCAGUGCUCAUCGCCAUACCAAGUUUUAUACAGAUCCAGUAGAAGCUGUAAAAGACAUCCCUGAUGGUGCCACGGUUUUGGUUGGUGGUUUUGGGCUAUGUGGAAUUCCAGAGAAUCUUAUAGAUGCUUUACUGAAAACUGGAGUAAAAGGACUAACUGCAGUCAGCAACAAUGCAGGGGUUGACAAUUUUGGUUUGGGGCUUUUGCUUCGGUCCAAGCAGAUAAAACGCAUGGUCUCUUCAUAUGUGGGAGAAAAUGCAGAAUUUGAACGACAGUACUUAUCUGGUGAAUUAGAAGUGGAGCUGACACCACAGGGCACACUUGCAGAGAGGAUCCGUGCAGGCGGGGCUGGAGUUCCUGCAUUUUACACCCCAACAGGGUAUGGGACCCUGGUACAAGAAGGAGGAUCGCCCAUCAAAUACAACAAAGAUGGCAGUGUUGCCAUUGCCAGUAAGCCAAGAGAGGUGAGGGAGUUCAAUGGUCAGCACUUUAUUUUGGAGGAAGCAAUUACAGGGGAUUUUGCUUUGGUGAAAGCCUGGAAGGCGGACCGAGCAGGAAACGUGAUUUUCAGGAAAAGUGCAAGGAAUUUCAACUUGCCAAUGUGCAAAGCUGCAGAAACCACAGUGGUAGAGGGAUGUGUUUGUUCCUUUUCCACCAGUGCUCAUCGCCAUACCAAGUUUUA	circ
ENSG00000083720:-:5:41840450:41862750	ENSG00000083720	ENST00000196371	-	5	41840451	41862750	22	CAGUGGUAGAGGGAUGUGUUUG	bsj
ENSG00000083720:-:5:41840450:41862750	ENSG00000083720	ENST00000196371	-	5	41862741	41862950	210	CAUGUAUGCCAUAAAUAUAUACAUGUAUUACCUGUAUAAAUAUAUACAUUAUAUACAGUUAUUACCUGGCAAUUAAAAACGUGUAUAUAUAAAGGAGAUAAUGAAAUUAUCAUUUGUCUAUCAAUUGAAUAAAUUGCUACACACACAAAGUAAAGCUGUAUCUCCAAAUGAUUAUCAAUUUUUUUUUUUUAAUAUUUCAGGGAUGUGUUU	ie_up
ENSG00000083720:-:5:41840450:41862750	ENSG00000083720	ENST00000196371	-	5	41840251	41840460	210	AGUGGUAGAGGUAAGAGGUUAUUUUUGAAUUCUUGGUGUUAAUUAUUUAACUUGAUGUUAAGUAUUAAUUCAAGAAAAAGUACCACAGUUCAUUUGUUUUAUGGAUAACAAUGACAGCUUUUUUUUUUGUUUUGGAAAUGGAUCCAUUCUAUCUAAAUAUAUAAUAGUUAAAAUUUUGCUGUAACUUCAGCUUUCUGGUUAGAUAGGGUC	ie_down

• Note:
  • id: unique identifier.
  • gene: represents the gene from which the circRNA arises.
  • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
  • strand: is the strand from which the gene is transcribed.
  • chrom: is the chromosome from which the circRNA is derived.
  • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
  • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
  • length: length of the extracted sequences.
  • seq: sequence used in the downstream analysis.
  • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.