ENSG00000204217:+:2:202464808:202467689

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000204217:+:2:202464808:202467689 ENSG00000204217 ENST00000374580 + 2 202464809 202467689 342 CUUCGCAGAAUCAAGAACGGCUAUGUGCGUUUAAAGAUCCGUAUCAGCAAGACCUUGGGAUAGGUGAGAGUAGAAUCUCUCAUGAAAAUGGGACAAUAUUAUGCUCGAAAGGUAGCACCUGCUAUGGCCUUUGGGAGAAAUCAAAAGGGGACAUAAAUCUUGUAAAACAAGGAUGUUGGUCUCACAUUGGAGAUCCCCAAGAGUGUCACUAUGAAGAAUGUGUAGUAACUACCACUCCUCCCUCAAUUCAGAAUGGAACAUACCGUUUCUGCUGUUGUAGCACAGAUUUAUGUAAUGUCAACUUUACUGAGAAUUUUCCACCUCCUGACACAACACCACUCACUUCGCAGAAUCAAGAACGGCUAUGUGCGUUUAAAGAUCCGUAUCAGCAA circ
ENSG00000204217:+:2:202464808:202467689 ENSG00000204217 ENST00000374580 + 2 202464809 202467689 22 AACACCACUCACUUCGCAGAAU bsj
ENSG00000204217:+:2:202464808:202467689 ENSG00000204217 ENST00000374580 + 2 202464609 202464818 210 UUUCCUUCUUGUUUGGAGUUUACAAAUGAAUUCAUGAACAGAAGAACGUCAUUGAAUGUAAAAUUAGAAAUUUAUGUAAAGAUUUCAGUUCAAAUAAUUUAGUAGGGAAAUUUAUGAAGUCAUUCGGAUAAGACAAAGAUUUUAUAUAAUAUUUUGAAAACAUUAAAUAAUUUGUCAUUCCUUUAUUUCCUUUAUUUUAGCUUCGCAGAA ie_up
ENSG00000204217:+:2:202464808:202467689 ENSG00000204217 ENST00000374580 + 2 202467680 202467889 210 ACACCACUCAGUAAGUAAAGUAACCAACUUUUCUUUGUAUUUCCUUUCUCCAAAGAUUUGCAAAAUAUAAAAAAACUUAAAAAACAUUCAAGGUUGAAGCCAGGCGUGAUGGCUCAUGCCUGUAAUGCCAGCACUUUGGGAGGCCGAGGUGGAUGGAUCACCUGAGGUCAGAGUUUGAGACCAGCCUGGUGAAAUCCCGUCUCUGCCAAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM28 4 822 0.014619883 0.0011926949 3.615635 AGUAGA,GAGUAG,GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
AGO1 2 548 0.008771930 0.0007956130 3.462756 AGGUAG,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM42 1 407 0.005847953 0.0005912752 3.306030 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBMY1A1 1 489 0.005847953 0.0007101099 3.041817 CAAGAC ACAAGA,CAAGAC
MATR3 2 739 0.008771930 0.0010724109 3.032036 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
SNRNP70 3 1237 0.011695906 0.0017941145 2.704660 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ERI1 1 632 0.005847953 0.0009173461 2.672394 UUCAGA UUCAGA,UUUCAG
IGF2BP1 1 831 0.005847953 0.0012057377 2.278016 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SSB 2 1260 0.008771930 0.0018274462 2.263065 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZNF638 3 1773 0.011695906 0.0025708878 2.185665 GUUGGU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF2 3 1886 0.011695906 0.0027346479 2.096577 AUGUGU,UAUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PUM1 10 5823 0.032163743 0.0084401638 1.930092 AAUAUU,ACAUAA,AGAAUU,CAGAAU,CUUGUA,UAAUGU,UGUAAA,UGUAAU,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ZCRB1 2 1605 0.008771930 0.0023274215 1.914162 GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
G3BP2 2 1644 0.008771930 0.0023839405 1.879546 AGGAUG,GGAUAG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPL 8 5085 0.026315789 0.0073706513 1.836065 AAACAA,ACACAA,ACACCA,ACAUAA,ACAUAC,CACAAC,CACCAC,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
PABPC3 1 1234 0.005847953 0.0017897669 1.708160 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ZFP36L2 1 1277 0.005847953 0.0018520827 1.658783 AUUUAU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM46 6 4554 0.020467836 0.0066011240 1.632575 AAUCAA,AUCAAA,AUCAAG,AUGAAA,AUGAAG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
MSI1 3 2770 0.011695906 0.0040157442 1.542264 AGGUAG,UAGGUG,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
U2AF2 1 1477 0.005847953 0.0021419234 1.449025 UUUUCC UUUUCC,UUUUUC,UUUUUU
YBX2 1 1480 0.005847953 0.0021462711 1.446099 ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
IGF2BP2 10 8408 0.032163743 0.0121863560 1.400168 AAAACA,AAAUCA,AAUUCA,ACAUAC,CAACAC,CAAUUC,CACUCA,CCACUC,GAAAUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBM24 2 2357 0.008771930 0.0034172229 1.360070 AGAGUG,GAGUGU AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PABPC5 2 2400 0.008771930 0.0034795387 1.333998 AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP3 5 4815 0.017543860 0.0069793662 1.329798 AAAACA,AAAUCA,AAUUCA,ACAUAC,CACUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPLL 3 3534 0.011695906 0.0051229360 1.190961 ACACCA,ACAUAC,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
TARDBP 2 2654 0.008771930 0.0038476365 1.188922 GAAUGG,GAAUGU GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PUM2 1 1890 0.005847953 0.0027404447 1.093522 UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBMX 4 4925 0.014619883 0.0071387787 1.034183 AGUAAC,AUCAAA,AUCCCC,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SF1 4 4931 0.014619883 0.0071474739 1.032426 AGUAAC,CACAGA,UACUGA,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF3 2 61 0.1363636 0.004060781 5.069558 ACUUCG,CACUUC AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 4 200 0.011904762 0.0010126965 3.555265 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
HNRNPAB 6 351 0.016666667 0.0017734784 3.232312 AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC3 5 310 0.014285714 0.0015669085 3.188580 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SNRNP70 3 253 0.009523810 0.0012797259 2.895704 AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IGHMBP2 3 350 0.009523810 0.0017684401 2.429061 AAAAAA AAAAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
HNRNPD 13 1488 0.033333333 0.0075020153 2.151615 AAAAAA,AAUUUA,AGUAGG,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
SART3 6 777 0.016666667 0.0039197904 2.088117 AAAAAA,AAAAAC,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
PABPC4 3 462 0.009523810 0.0023327287 2.029520 AAAAAA AAAAAA,AAAAAG
RBM4 8 1094 0.021428571 0.0055169287 1.957598 CCUUCU,CUUCUU,UCCUUC,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAAAA,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC1 8 1321 0.021428571 0.0066606207 1.685807 AAAAAA,AAAAAC,ACAAAU,CAAAUA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUAAUU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGF2BP3 8 1348 0.021428571 0.0067966546 1.656639 AAAAAC,AAAACA,AAUUCA,ACAUUC,CACUCA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PUM2 4 764 0.011904762 0.0038542926 1.627001 UAAAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
G3BP2 2 490 0.007142857 0.0024738009 1.529772 GGAUAA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
IGF2BP2 12 2163 0.030952381 0.0109028617 1.505344 AAAAAC,AAAACA,AAUUCA,ACAUUC,CACUCA,CAUUCA,CCACUC,GAAAAC,GAAAUC,GAAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PPIE 51 9262 0.123809524 0.0466696896 1.407565 AAAAAA,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUAUU,AAUUUA,AUAAAA,AUAAUA,AUAAUU,AUAUAA,AUAUUU,AUUAAA,AUUUAU,AUUUUA,UAAAAA,UAAAAU,UAAAUA,UAAUAU,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUUUU,UUAAAA,UUAAAU,UUAUAU,UUAUUU,UUUAUA,UUUAUU,UUUUAU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AAUAUA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGUGG,AGUAAG,AGUAGG,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 AAAAAA,AUUUAU,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AAAAAA,AAUUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUUA,AGUUUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAUUUA,AGUAGG,GAAGCC,GUAGGG,UAGGGA,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ZFP36 39 9408 0.095238095 0.0474052801 1.006491 AAAAAA,AAAAAC,AAAACA,AAAAUA,AAAGUA,AAAUAA,AAGUAA,ACAAAG,ACAAAU,ACUUUU,AGUAAA,AUUUAU,CAAAGA,CAAAUA,CCUUCU,CCUUUC,GUAAAG,UAAAGA,UAAAUA,UAAGUA,UCCUUC,UCCUUU,UCUUGU,UUAUUU,UUUAUA,UUUAUU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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