ENSG00000186298:-:12:110730528:110731901

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000186298:-:12:110730528:110731901 ENSG00000186298 ENST00000335007 - 12 110730529 110731901 363 UGAGAGGGUCCAAGCCUGGUAAGAAUGUCCAGCUUCAGGAGAAUGAAAUCAGAGGACUGUGCUUAAAGUCUCGUGAAAUCUUUCUCAGUCAGCCUAUCCUACUAGAACUUGAAGCACCACUCAAAAUAUGUGGUGACAUCCAUGGACAAUACUAUGAUUUGCUGCGACUUUUUGAGUACGGUGGUUUCCCACCAGAAAGCAACUACCUGUUUCUUGGGGACUAUGUGGACAGGGGAAAGCAGUCAUUGGAGACGAUCUGCCUCUUACUGGCCUACAAAAUAAAAUAUCCUGAGAAUUUUUUUCUUCUCAGAGGGAACCAUGAAUGUGCCAGCAUCAACAGAAUUUAUGGAUUUUAUGAUGAAUUGAGAGGGUCCAAGCCUGGUAAGAAUGUCCAGCUUCAGGAGAAUGAAAUC circ
ENSG00000186298:-:12:110730528:110731901 ENSG00000186298 ENST00000335007 - 12 110730529 110731901 22 UUAUGAUGAAUUGAGAGGGUCC bsj
ENSG00000186298:-:12:110730528:110731901 ENSG00000186298 ENST00000335007 - 12 110731892 110732101 210 CUUGGUAUCGAAGAUGCAAUUAAGUCUUGUCUAAGAUUUUAAGAUUCUAAUUAGACAUUAAAACCAUGUUUAUUAUAAGUGUCCUGAAAAUGAAGCCACUCAGAAAGCUAGUUAAACCAUGUUUUUGCCCCUUUAUCUAAAUCUCGUAUUGUAUUUUGUAUUUUGGCUUCAUUGGACUAAUUGCGAUUUUUCUCUUGCAGUGAGAGGGUC ie_up
ENSG00000186298:-:12:110730528:110731901 ENSG00000186298 ENST00000335007 - 12 110730329 110730538 210 UAUGAUGAAUGUAAGUACUUUUCUAUAUCUAAGGAAGAGUUAUUGAAAUUAAGAUAUUUAUCAUAAACAAUUAUCACAUACUUCUGUUAGGAAUUGUGAGAGUUUAGAUGCAGUGGUAUCAUCUCUCAUGUUUUCUAUUUCAUCAACUUGUUUUUAGCUUAGCUUUUUUAGGGGGGUGGGGGAACGGAGUCUCACUCUGUUGCCCAGGCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 339 0.008264463 0.0004927293 4.068054 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM42 1 407 0.005509642 0.0005912752 3.220057 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
TUT1 2 678 0.008264463 0.0009840095 3.070177 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA0 1 453 0.005509642 0.0006579386 3.065934 AAUUUA AAUUUA,AGAUAU,AGUAGG
CPEB4 2 821 0.008264463 0.0011912456 2.794450 UUUUUU UUUUUU
DDX19B 2 821 0.008264463 0.0011912456 2.794450 UUUUUU UUUUUU
EIF4A3 2 821 0.008264463 0.0011912456 2.794450 UUUUUU UUUUUU
IGF2BP1 2 831 0.008264463 0.0012057377 2.777005 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RALY 4 1553 0.013774105 0.0022520629 2.612639 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 5 2062 0.016528926 0.0029897078 2.466917 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
U2AF2 3 1477 0.011019284 0.0021419234 2.363052 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
MATR3 1 739 0.005509642 0.0010724109 2.361101 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
KHDRBS2 4 1858 0.013774105 0.0026940701 2.354099 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM3 4 2152 0.013774105 0.0031201361 2.142278 AAUACU,AGACGA,AUACUA,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CPEB2 4 2261 0.013774105 0.0032780993 2.071027 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA1 7 3872 0.022038567 0.0056127669 1.973246 AGCACC,AUCAAC,CAGUCA,UCAGUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPC 6 3471 0.019283747 0.0050316361 1.938286 AUUUUU,CUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NONO 2 1498 0.008264463 0.0021723567 1.927660 AGAGGA,GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM6 1 1054 0.005509642 0.0015289102 1.849455 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
TARDBP 4 2654 0.013774105 0.0038476365 1.839914 GAAUGA,GAAUGU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ESRP2 3 2150 0.011019284 0.0031172377 1.821690 GGGAAA,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
SYNCRIP 2 1634 0.008264463 0.0023694485 1.802370 UUUUUU AAAAAA,UUUUUU
RBM46 7 4554 0.022038567 0.0066011240 1.739247 AAUGAA,AUGAAA,AUGAAU,AUGAUG,AUGAUU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS3 5 3429 0.016528926 0.0049707696 1.733452 AAAUAA,AAUAAA,AUAAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL3 4 2867 0.013774105 0.0041563169 1.728581 AUUUAU,AUUUUA,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
AGO2 2 1830 0.008264463 0.0026534924 1.639029 GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CELF2 2 1886 0.008264463 0.0027346479 1.595566 UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SSB 1 1260 0.005509642 0.0018274462 1.592130 CUGUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZRANB2 4 3173 0.013774105 0.0045997733 1.582324 AGGGAA,GGUGGU,GUGGUG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ZFP36L2 1 1277 0.005509642 0.0018520827 1.572810 AUUUAU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPU 2 1965 0.008264463 0.0028491350 1.536397 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
NOVA2 5 4013 0.016528926 0.0058171047 1.506620 AGCACC,AGUCAU,AUCAAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS1 5 4064 0.016528926 0.0058910141 1.488405 AUAAAA,CAAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
FXR2 4 3434 0.013774105 0.0049780156 1.468316 AGACGA,GACAGG,GGACAA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
PUM1 7 5823 0.022038567 0.0084401638 1.384688 AGAAUU,CAGAAU,CCAGAA,GAAUUG,GUCCAG,UGUCCA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
FUS 4 3648 0.013774105 0.0052881452 1.381125 CGGUGG,UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ELAVL1 6 5554 0.019283747 0.0080503280 1.260266 AUUUAU,UGAUUU,UGGUUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ENOX1 3 3195 0.011019284 0.0046316558 1.250430 GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZCRB1 1 1605 0.005509642 0.0023274215 1.243226 GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SF1 5 4931 0.016528926 0.0071474739 1.209488 AUACUA,CAGUCA,UACUAG,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
PTBP1 18 16854 0.052341598 0.0244263326 1.099521 ACUUUU,AUUUUU,CCUCUU,CUCUUA,CUUCUC,CUUUCU,CUUUUU,UCUUCU,UCUUUC,UUCUUC,UUCUUG,UUUCCC,UUUCUU,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
HNRNPD 2 2837 0.008264463 0.0041128408 1.006786 AAUUUA,AUUUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PUM1 1 16 0.09090909 0.00111344 6.351329 GAAUUG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAUAA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUAAUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPB2 4 288 0.011904762 0.001456066 3.031391 GUAUUG,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 2 222 0.007142857 0.001123539 2.668451 AAGGAA,GGGGGG AAGGAA,GAAGGA,GGGGGG
HNRNPA1L2 1 188 0.004761905 0.000952237 2.322146 UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
ACO1 2 325 0.007142857 0.001642483 2.120623 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
EIF4B 1 226 0.004761905 0.001143692 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SSB 3 505 0.009523810 0.002549375 1.901395 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PABPC5 3 596 0.009523810 0.003007860 1.662801 AGAAAG,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
QKI 5 904 0.014285714 0.004559653 1.647577 ACUAAU,AUCAUA,AUCUAA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC3 1 310 0.004761905 0.001566909 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM46 6 1091 0.016666667 0.005501814 1.598986 AAUGAA,AUCAUA,AUGAAG,AUGAAU,AUGAUG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM41 2 502 0.007142857 0.002534260 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL4 16 2916 0.040476190 0.014696695 1.461582 AUCUAA,AUUUAU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UUGUAU,UUUAUU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
NONO 1 364 0.004761905 0.001838976 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.002816405 1.342647 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 2 562 0.007142857 0.002836558 1.332360 CUAUAU,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZFP36L2 3 774 0.009523810 0.003904676 1.286336 AUUUAU,UAUUUA,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
A1CF 2 598 0.007142857 0.003017936 1.242939 UAAUUA,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RC3H1 2 631 0.007142857 0.003184200 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPD 6 1488 0.016666667 0.007502015 1.151615 AGAUAU,AUUUAU,UAUUUA,UUAGGA,UUAGGG,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZCRB1 2 666 0.007142857 0.003360540 1.087808 AAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 8 2006 0.021428571 0.010111850 1.083489 AUUUUU,CUUUUU,GGGGGG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 21 5140 0.052380952 0.025901854 1.015987 AUUUUG,AUUUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UAUUUU,UUUAUU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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