ENSG00000177885:-:17:75393550:75393765

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000177885:-:17:75393550:75393765 ENSG00000177885 ENST00000392562 - 17 75393551 75393765 215 GGUGGCAUUGUGUGUCCCAGAGUGCCGGAGCGAGUCCCAGAAGAGAGGCGAGGCUAAGCCCAGAGCGCUGGGUUGCUUCAGCAGGGAAGACUCCCUUCCCCCUGCUUCAGGCUGCUGAGCACUGAGCAGCGCUCAGAAUGGAAGCCAUCGCCAAAUAUGACUUCAAAGCUACUGCAGACGACGAGCUGAGCUUCAAAAGGGGGGACAUCCUCAAGGGUGGCAUUGUGUGUCCCAGAGUGCCGGAGCGAGUCCCAGAAGAGAGGCG circ
ENSG00000177885:-:17:75393550:75393765 ENSG00000177885 ENST00000392562 - 17 75393551 75393765 22 ACAUCCUCAAGGGUGGCAUUGU bsj
ENSG00000177885:-:17:75393550:75393765 ENSG00000177885 ENST00000392562 - 17 75393756 75393965 210 GGCAGGCCUGUCAGUCGCCUGGGGGCCGAGGCUGAAAAGAGGAAGAAGUCGGCGGGGGGGGGCUGUUGCCUGGAAGGGAGGGAGGAGGGCUGAGCCAGGCCGAGCCAGGGGGCGUGGGGGCUGGGACAGCAGGCCGAUUGGCAGGGCGGGGUUGCCUUCAAUCCUGGCCACUGCUCUUAAUCGUCCCUCUCCUGCUUCAGGGUGGCAUUG ie_up
ENSG00000177885:-:17:75393550:75393765 ENSG00000177885 ENST00000392562 - 17 75393351 75393560 210 CAUCCUCAAGGUAAGUGCUGAUGCCGAGCACAAUGCUGAGAUCGCUCUCCCUGUGCUCACCCACCUUCUUUCGCCCUGAUUACACACAAAGAAGCUGUGUUUUUCAUUGUACACUUUUAACAUUUACCAUCAUAUUUGUUCUGGAGAGCUUUAGAUGCUGAGUAGAAUAUUAAAUAUGACUUAAGUGAGUUGGUGUGAUGUGUGGUGUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 339 0.009302326 0.0004927293 4.238724 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ZC3H10 5 1053 0.027906977 0.0015274610 4.191418 CAGCGC,GAGCGA,GAGCGC,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
FXR1 1 411 0.009302326 0.0005970720 3.961615 ACGACG ACGACA,ACGACG,AUGACA,AUGACG
CELF2 3 1886 0.018604651 0.0027346479 2.766236 GUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 1415 0.013953488 0.0020520728 2.765472 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPM 1 999 0.009302326 0.0014492040 2.682331 GGGGGG AAGGAA,GAAGGA,GGGGGG
RBM24 3 2357 0.018604651 0.0034172229 2.444767 AGAGUG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF4 2 1782 0.013953488 0.0025839306 2.432987 GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RC3H1 2 1786 0.013953488 0.0025897275 2.429754 CCCUUC,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CELF1 3 2391 0.018604651 0.0034664959 2.424113 GUGUGU,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPN1 1 1222 0.009302326 0.0017723764 2.391906 AGAAGA AAAAGA,AGAAGA
CSTF2 2 1967 0.013953488 0.0028520334 2.290563 GUGUGU,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 3 2654 0.018604651 0.0038476365 2.273619 GAAUGG,GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPLL 4 3534 0.023255814 0.0051229360 2.182549 ACUGCA,AGACGA,CAGACG,GACGAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBM3 2 2152 0.013953488 0.0031201361 2.160945 AAGACU,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 1498 0.009302326 0.0021723567 2.098330 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPU 1 1965 0.009302326 0.0028491350 1.707067 GGGGGG AAAAAA,CCCCCC,GGGGGG,UUUUUU
ESRP2 1 2150 0.009302326 0.0031172377 1.577323 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
FXR2 2 3434 0.013953488 0.0049780156 1.486983 AGACGA,GACGAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM5 5 6879 0.027906977 0.0099705232 1.484885 AAGGGG,AGGGAA,AGGGUG,CAAGGG,GGGGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
FUS 2 3648 0.013953488 0.0052881452 1.399792 GGGGGG,GGGUGG AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SRSF4 2 3740 0.013953488 0.0054214720 1.363869 AGAAGA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
KHSRP 11 15466 0.055813953 0.0224148375 1.316172 AGCUUC,CCCCCU,CCCUUC,CCUUCC,CUCCCU,CUGCUU,GUGUGU,UGCUUC,UGUGUG,UUGUGU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
MBNL1 9 13372 0.046511628 0.0193802045 1.263008 CCUGCU,CUGCUG,CUGCUU,GCGCUC,GCGCUG,GCUGCU,UGCUUC,UUGCUU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
SRSF3 11 16536 0.055813953 0.0239654858 1.219668 ACGACG,ACUUCA,CAUCGC,CUUCAA,CUUCAG,GACUUC,GCUUCA AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
HNRNPH2 6 9711 0.032558140 0.0140746688 1.209917 AAGGGG,AGGCGA,AGGGAA,GGGAAG,GGGGGA,GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
YTHDC1 3 5576 0.018604651 0.0080822104 1.202842 GAGUGC,GGCUGC,UACUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
CELF6 1 2997 0.009302326 0.0043447134 1.098330 UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
NELFE 1 3028 0.009302326 0.0043896388 1.083489 GGCUAA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM4 1 3065 0.009302326 0.0044432593 1.065973 CCUUCC CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPK 5 9304 0.027906977 0.0134848428 1.049287 CCCCCU,GCCCAG,GGGGGG,UCCCCC,UCCCUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
PCBP2 6 11045 0.032558140 0.0160079069 1.024234 CCCCCU,CCCUUC,CCUUCC,CUCCCU,CUUCCC,GGGGGG AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
ZRANB2 1 3173 0.009302326 0.0045997733 1.016029 AGGGAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FUS 1 11 0.09090909 0.0007859576 6.853829 GGGUGG AAAAAA,CGGUGG,GGGUGA,GGGUGG,GGGUGU
RBM5 2 56 0.13636364 0.0037332984 5.190864 AGGGUG,CAAGGG AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 CAAGGG AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
SRSF9 1 134 0.09090909 0.0088420225 3.361976 GGGUGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 2 82 0.007142857 0.0004181782 4.094312 AAGAAG AAGAAG
HNRNPM 4 222 0.011904762 0.0011235389 3.405417 GGGGGG AAGGAA,GAAGGA,GGGGGG
SRP14 2 218 0.007142857 0.0011033857 2.694564 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
SRSF4 6 558 0.016666667 0.0028164047 2.565039 AAGAAG,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
CELF4 7 776 0.019047619 0.0039147521 2.282618 GGUGUG,GGUGUU,GUGUGG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPH3 23 2496 0.057142857 0.0125806127 2.183371 AAGGGA,CGGGGG,GAAGGG,GGAAGG,GGAGGA,GGAGGG,GGGAGG,GGGCGU,GGGCUG,GGGGCU,GGGGGC,GGGGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPH1 28 3406 0.069047619 0.0171654575 2.008083 AAGGGA,AGGAAG,CGGGGG,CUGGGG,GAAGGG,GAGGAA,GGAAGG,GGAGGA,GGAGGG,GGGAGG,GGGCGU,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH2 26 3198 0.064285714 0.0161174929 1.995871 AAGGGA,CGGGGG,CUGGGG,GAAGGG,GGAAGG,GGAGGA,GGAGGG,GGGAGG,GGGCGU,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
NONO 2 364 0.007142857 0.0018389762 1.957598 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TRA2A 8 1133 0.021428571 0.0057134220 1.907109 AAAGAA,AAGAAG,AAGAGG,AGAGGA,AGGAAG,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPF 25 3360 0.061904762 0.0169336961 1.870153 AAGGGA,AGGAAG,CGGGGG,CUGGGG,GAAGGG,GAGGAA,GGAAGG,GGAGGA,GGAGGG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
CELF6 8 1196 0.021428571 0.0060308343 1.829106 GUGAUG,GUGGGG,GUGGUG,GUGUGG,UGUGAU,UGUGGU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUUU,UGUGUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 GGAGGA,GGAGGG,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACACAC,CACACA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
SRSF10 14 2937 0.035714286 0.0148024990 1.270661 AAAAGA,AAAGAA,AAAGAG,AAGAAG,AAGAGG,AAGGGA,ACAAAG,AGAGGA,CAAAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBM5 11 2359 0.028571429 0.0118903668 1.264780 AAGGUA,AGGGAG,AGGGUG,AGGUAA,GAAGGG,GAGGGA,GGGGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 GGGGGG,UCAGUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAGAAG,AGGAAG,GAAGAA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
FUS 7 1711 0.019047619 0.0086255542 1.142922 GGGGGG,GGGUGG,UGGUGU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUGGU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGA,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,GACUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AGGAAG,GAAGAA,GAGGAA,GGAAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACAC,AUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 GGGGGG AAAAAA,CCCCCC,GGGGGG,UUUUUU
SFPQ 30 7087 0.073809524 0.0357114067 1.047422 AAGAGG,AAGGGA,AGAGGA,AGAUCG,AGGGGG,CUGGAG,CUGGGA,GAAGAA,GAGGAA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGG,GGUAAG,GUGAUG,GUGGUG,UCUGGA,UGAUGU,UGGAAG,UGGAGA,UGGUGU,UUGGUG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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