ENSG00000197157:+:7:127686612:127807573

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000197157:+:7:127686612:127807573 ENSG00000197157 ENST00000354725 + 7 127686613 127807573 1164 GUCCUCUCAGGGUGCGCCAUCAUUGUCCGAGGUCAGCCUCGUGGUGGGCCUCCUCCUGAGCGGCAGAUCAACCUCAGCAACAUUCGUGCUGGAAAUCUUGCUCGCCGGGCAGCCGCCACACAACCUGAUGCAAAGGAUACCCCUGAUGAGCCCUGGGCAUUUCCAGCUCGAGAGUUCCUUCGAAAGAAGCUGAUUGGGAAGGAAGUCUGUUUCACGAUAGAAAACAAGACUCCCCAGGGGCGAGAGUAUGGCAUGAUCUACCUUGGAAAAGAUACCAAUGGGGAAAACAUUGCAGAAUCACUGGUUGCAGAGGGCUUAGCCACCCGGAGAGAAGGCAUGAGAGCUAAUAAUCCUGAGCAGAACCGGCUUUCAGAAUGUGAAGAACAAGCAAAGGCAGCCAAGAAAGGGAUGUGGAGUGAGGGGAACGGUUCACAUACUAUCCGGGAUCUCAAGUAUACCAUUGAAAACCCAAGGCACUUUGUGGACUCACACCACCAGAAGCCUGUUAAUGCUAUCAUCGAGCAUGUGCGGGACGGCAGUGUGGUCAGGGCCCUGCUCCUCCCAGAUUACUACCUGGUUACAGUCAUGCUGUCAGGCAUCAAGUGCCCAACUUUUCGACGGGAAGCAGAUGGCAGUGAAACUCCAGAGCCUUUUGCUGCAGAAGCCAAAUUUUUCACUGAGUCGCGACUGCUUCAGAGAGAUGUUCAGAUCAUUCUGGAGAGCUGCCACAACCAGAACAUUCUGGGUACCAUCCUUCAUCCAAAUGGCAACAUCACAGAGCUCCUCCUGAAGGAAGGUUUCGCACGCUGUGUGGACUGGUCGAUUGCAGUUUACACCCGGGGCGCAGAAAAGCUGAGGGCGGCAGAGAGGUUUGCCAAAGAGCGCAGGCUGAGAAUAUGGAGAGACUAUGUGGCUCCCACAGCUAAUUUGGACCAAAAGGACAAGCAGUUUGUUGCCAAGGUGAUGCAGGUUCUGAAUGCUGAUGCCAUUGUUGUGAAGCUGAACUCAGGCGAUUACAAGACGAUUCACCUGUCCAGCAUCCGACCACCGAGGCUGGAGGGGGAGAACACCCAGGAUAAGAACAAGAAACUGCGUCCCCUGUAUGACAUUCCUUACAUGUUUGAGGCCCGGGAAUUUCUUCGAAAAAAGCUUAUUGGGAAGAAGGUCCUCUCAGGGUGCGCCAUCAUUGUCCGAGGUCAGCCUCGUGGUGGGCC circ
ENSG00000197157:+:7:127686612:127807573 ENSG00000197157 ENST00000354725 + 7 127686613 127807573 22 UUGGGAAGAAGGUCCUCUCAGG bsj
ENSG00000197157:+:7:127686612:127807573 ENSG00000197157 ENST00000354725 + 7 127686413 127686622 210 AAUUUGGCCCCAGGCUUUAUGUAGGUAUUUCUCUUAUAAAAUUAAAAACAAUCCUGUUUAUUUAGUCAUUCAACAGAUGACUUUGCAUGCCUUUGAAGUGCAAAUGCUAUUUGAAAUGUUGGGGAUACGGUGGUACACAACCUGCAUUAUGGUGAUACGGCCUCUGGACCAUUCAUUUUCUCUUUCUUCCCCCUACGUAGGUCCUCUCAG ie_up
ENSG00000197157:+:7:127686612:127807573 ENSG00000197157 ENST00000354725 + 7 127807564 127807773 210 UGGGAAGAAGGUAAGUAAUUGAUGACAGAAGCAUAUUUGCAAGUGGUUGGGCUUAAGCUAAUCUUUUGGAGGCAAUUGUUAUAAGCUGGGCCCUUUACCAGCAGAUGACACUUCUCCAUCAAGUCAAAUGGAAUUACUUUGAUAUGAAGAGAGGCGUGUUUAUGUGUCAGAAACGGUACCCGAUGGGAGAGGUUUAAAAUUGGGGCCCUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.001718213 0.0002275250 2.916812 AGGGAU AGGGAU
RBMY1A1 5 489 0.005154639 0.0007101099 2.859757 ACAAGA,CAAGAC ACAAGA,CAAGAC
ANKHD1 2 339 0.002577320 0.0004927293 2.387004 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ERI1 4 632 0.004295533 0.0009173461 2.227299 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM25 1 268 0.001718213 0.0003898359 2.139970 CGGGCA AUCGGG,CGGGCA,UCGGGC
SNRPB2 6 991 0.006013746 0.0014376103 2.064591 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NXF1 1 286 0.001718213 0.0004159215 2.046526 AACCUG AACCUG
PABPC3 6 1234 0.006013746 0.0017897669 1.748492 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ESRP2 11 2150 0.010309278 0.0031172377 1.725603 GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPM 4 999 0.004295533 0.0014492040 1.567576 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM8A 2 611 0.002577320 0.0008869128 1.539007 GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
FXR1 1 411 0.001718213 0.0005970720 1.524932 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBFOX1 4 1077 0.004295533 0.0015622419 1.459219 AGCAUG,GCAUGA,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRSF11 2 688 0.002577320 0.0009985015 1.368035 AAGAAG AAGAAG
RBM3 8 2152 0.007731959 0.0031201361 1.309225 AAGACG,AAGACU,AGACGA,AGACUA,AUACUA,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
MATR3 2 739 0.002577320 0.0010724109 1.265014 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGF2BP1 2 831 0.002577320 0.0012057377 1.095955 CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SRP14 2 847 0.002577320 0.0012289250 1.068475 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
EIF4B 3 1179 0.003436426 0.0017100607 1.006861 CUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMX 1 34 0.09090909 0.002292376 5.309509 AGAAGG AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
TRA2B 1 51 0.09090909 0.003405816 4.738352 AGAAGG AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
RBM5 1 56 0.09090909 0.003733298 4.605902 GAAGGU AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPF 1 90 0.09090909 0.005960178 3.930997 GAAGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 GAAGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 GAAGGU AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF1 2 625 0.13636364 0.041000786 1.733736 AGAAGG,GAAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
FXR1 2 69 0.007142857 0.0003526804 4.340068 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
IFIH1 2 146 0.007142857 0.0007406288 3.269679 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUCAAG,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZCRB1 6 666 0.016666667 0.0033605401 2.310201 AAUUAA,GAAUUA,GCUUAA,GGCUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
NONO 2 364 0.007142857 0.0018389762 1.957598 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM3 3 541 0.009523810 0.0027307537 1.802240 GAAACG,GAUACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGAAG,GGGGAU,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAAC,AAAACA,ACAAUC,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,CAACAG,GAAGAA,GGAAGA,UACGGC,UACGUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGUAA,AGGUAU,AGGUUU,GAGGUU,GGUGGU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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