circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000066735:+:14:104152014:104167048
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000066735:+:14:104152014:104167048 | ENSG00000066735 | MSTRG.10248.2 | + | 14 | 104152015 | 104167048 | 825 | GAUCCUUGCCUCUCUGCCCUGCUUCUCGACAAGCUACCAGCACCUGGGGCCCUGCCAGCCUGUCGCCCAGAGGCCGAGCGCCGCUGUGACGUCUGCGCCACACACCUGCAGCAGCUCACACGGGAGGCCAUGCACCUGCUGCAGGCCCCUGCCAGCCAUGAGGACCUUGACGCCCCCCAUGGAGGCCCCAGCCUCGCACCCCCCAGCACCACGACCAGCUCGAGGGACACGCCAGGACCAGCGGGUCCUGCAGGGAGGCAGCCAGGACGAGCUGGGCCAGACAGGACCAAGGGGCUGGCCUGGUCCCCCGGGCCCAGUGUCCAGGUGUCUGUAGCACCUGCGGGUCUUGGAGGGGCGCUGAGCACGGUCACCAUCCAGGCCCAGCAGUGCCUGGAGGGCAUGUGGAGUGUCUCGCGGGUCAACAGCUUCCUCCCGCCGGCGUGCCUGGCCGAGGCAGCGGUGGCGGCCGUGGCGGUGGCAGACACGGUCCGAGAAUGCCCCCCCGUGGCCGGCCCUGAUGGCUUGUCGAAGGCCUGGGGCCGUGGUGGAGUCUGCACGUCAGCCCUGGUCACCCCCACCCCGGGCUCGGUGGGGGGCUCCACAGGCCCCUCAGCUGCAGCCUCCUUCUUCAUAAGGGCUAUGCAGAAGCUCAGCCUGGCCUCCAAGAGGAAGAAGCCCCACCCGCCACCGCCUCCAGCCACCCGCGGCACCUCCACCUACCCCACCGACUUCAGCGGGGUCCUGCAGCUGUGGCCGCCCCCGGCGCCCCCCUGCCUGCUCAGGGCCGCCUCCAAGACCAAGGACAACCCUGGCAGCAUCGGGAAGGAUCCUUGCCUCUCUGCCCUGCUUCUCGACAAGCUACCAGCACCUGGGGC | circ |
| ENSG00000066735:+:14:104152014:104167048 | ENSG00000066735 | MSTRG.10248.2 | + | 14 | 104152015 | 104167048 | 22 | GCAUCGGGAAGGAUCCUUGCCU | bsj |
| ENSG00000066735:+:14:104152014:104167048 | ENSG00000066735 | MSTRG.10248.2 | + | 14 | 104151815 | 104152024 | 210 | GCCUCACGAUGAAGCCCGAUCAUUAUUUUCCUGCUGGGCUUGUGUGGGUGAAAGUGUUUGGGCUUAUUAAUCUGUUACGGAUGGUGCGGUGGCCAGGCGGGAGCUCGCAGCGUCAUGGACGGUGAGAGUGCUGGUGGGCUCUGGGUGCCGGCCCUCCCUCCCCAGGCACUGACCCUGCCUUUGUCCCUUGCUGUCCUCAGGAUCCUUGCC | ie_up |
| ENSG00000066735:+:14:104152014:104167048 | ENSG00000066735 | MSTRG.10248.2 | + | 14 | 104167039 | 104167248 | 210 | CAUCGGGAAGGUAGACGCAGCCCCGAGUUCGGGGCCCUGGGUGGGGAGGCCAGAGGCGUCUGAGAAGACGCAGGAGGGGUGAGGGAGUGGAGGGGCUGCCACUUCCUUCUCUGGGUUGGAUAAGGGUGGUCAGUGGGGUGCCAUGGGGAGACUGAGGCCCAGGUGGCAGCAGGGAGCCUGGGAGCCUGUGCUGGGCUGGGACUGCCGGGA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SUPV3L1 | 1 | 199 | 0.002424242 | 0.0002898408 | 3.064201 | CCGCCC | CCGCCC |
| IFIH1 | 7 | 904 | 0.009696970 | 0.0013115296 | 2.886284 | CCGCGG,GGCCCU,GGCCGC,GGGCCG | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| IGF2BP1 | 6 | 831 | 0.008484848 | 0.0012057377 | 2.814973 | AGCACC,CACCCG,GCACCC | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| PTBP2 | 1 | 267 | 0.002424242 | 0.0003883867 | 2.641968 | CUCUCU | CUCUCU |
| RBM25 | 1 | 268 | 0.002424242 | 0.0003898359 | 2.636595 | AUCGGG | AUCGGG,CGGGCA,UCGGGC |
| RBM14 | 2 | 478 | 0.003636364 | 0.0006941687 | 2.389138 | CGCGGC,CGCGGG | CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG |
| PPRC1 | 3 | 780 | 0.004848485 | 0.0011318283 | 2.098879 | CGGCGC,GGCGCC,GGGCGC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| ZC3H10 | 4 | 1053 | 0.006060606 | 0.0015274610 | 1.988327 | CCAGCG,CGAGCG,GAGCGC,GCAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| G3BP1 | 64 | 14282 | 0.078787879 | 0.0206989801 | 1.928414 | ACACGC,ACAGGC,ACCCCC,ACCCGC,ACGCCC,AGGCAG,AGGCCC,AGGCCG,CACACG,CACAGG,CACCCG,CACGCC,CAGGCC,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCAGGC,CCAUCC,CCCACC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGG,CCCCUC,CCCGCC,CCCGGC,CCGCCC,CCGCCG,CCGGCC,CGGCAC,CGGCCC,CGGCCG | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
| RBMY1A1 | 1 | 489 | 0.002424242 | 0.0007101099 | 1.771420 | CAAGAC | ACAAGA,CAAGAC |
| SAMD4A | 15 | 3992 | 0.019393939 | 0.0057866714 | 1.744800 | CGGGAA,CGGGCC,CGGGUC,CUGGCA,CUGGCC,CUGGUC,GCGGGU,GCUGGC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| HNRNPU | 6 | 1965 | 0.008484848 | 0.0028491350 | 1.574365 | CCCCCC,GGGGGG | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| SRP14 | 2 | 847 | 0.003636364 | 0.0012289250 | 1.565100 | CUGUAG,GCCUGU | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| HNRNPK | 31 | 9304 | 0.038787879 | 0.0134848428 | 1.524267 | ACCCCA,ACCCCC,ACCCGC,CAACCC,CCAUCC,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCCC | AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU |
| RBM8A | 1 | 611 | 0.002424242 | 0.0008869128 | 1.450670 | UGCGCC | ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU |
| HNRNPM | 2 | 999 | 0.003636364 | 0.0014492040 | 1.327236 | GAAGGA,GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| SRSF11 | 1 | 688 | 0.002424242 | 0.0009985015 | 1.279697 | AAGAAG | AAGAAG |
| RBM6 | 2 | 1054 | 0.003636364 | 0.0015289102 | 1.249993 | AUCCAG,CAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| NOVA1 | 9 | 3872 | 0.012121212 | 0.0056127669 | 1.110750 | AGCACC,CCCCCC,GGGGGG | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| HNRNPH2 | 23 | 9711 | 0.029090909 | 0.0140746688 | 1.047467 | AAGGGG,AUCGGG,AUGUGG,CAGGAC,CGAGGG,CUGGGG,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UCGAGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPH1 | 25 | 10717 | 0.031515152 | 0.0155325680 | 1.020749 | AAGGGG,AGGAAG,AUCGGG,AUGUGG,CAGGAC,CGAGGG,CUGGGG,GAGGAA,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UCGAGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPM | 1 | 5 | 0.09090909 | 0.0003929788 | 7.853829 | GAAGGA | AAGGAA,GAAGGA |
| RBMX | 2 | 34 | 0.13636364 | 0.0022923762 | 5.894471 | GAAGGA,GGAAGG | AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA |
| TRA2B | 2 | 51 | 0.13636364 | 0.0034058161 | 5.323315 | GAAGGA,GGAAGG | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| HNRNPA2B1 | 1 | 49 | 0.09090909 | 0.0032748232 | 4.794936 | GAAGGA | AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG |
| RBM5 | 1 | 56 | 0.09090909 | 0.0037332984 | 4.605902 | GAAGGA | AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU |
| HNRNPH3 | 1 | 61 | 0.09090909 | 0.0040607807 | 4.484596 | GGAAGG | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| FMR1 | 2 | 117 | 0.13636364 | 0.0077285827 | 4.141111 | AAGGAU,GAAGGA | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.0053052135 | 4.098942 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| SRSF9 | 2 | 134 | 0.13636364 | 0.0088420225 | 3.946939 | GAAGGA,GGAAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| HNRNPF | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.0078595756 | 3.531901 | GGAAGG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF7 | 1 | 128 | 0.09090909 | 0.0084490438 | 3.427565 | GGAAGG | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SFPQ | 1 | 153 | 0.09090909 | 0.0100864553 | 3.172005 | GAAGGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| SRSF2 | 2 | 479 | 0.13636364 | 0.0314383023 | 2.116864 | GGAAGG,GGAUCC | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 2 | 625 | 0.13636364 | 0.0410007860 | 1.733736 | GAAGGA,GGAAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM25 | 1 | 53 | 0.004761905 | 0.0002720677 | 4.129501 | AUCGGG | AUCGGG,CGGGCA,UCGGGC |
| IFIH1 | 2 | 146 | 0.007142857 | 0.0007406288 | 3.269679 | GGCCCU | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| ZC3H10 | 1 | 140 | 0.004761905 | 0.0007103990 | 2.744837 | GCAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| PABPN1 | 1 | 178 | 0.004761905 | 0.0009018541 | 2.400573 | AGAAGA | AAAAGA,AGAAGA |
| SRP14 | 1 | 218 | 0.004761905 | 0.0011033857 | 2.109602 | GCCUGU | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| EIF4B | 1 | 226 | 0.004761905 | 0.0011436921 | 2.057840 | GUUGGA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| HNRNPA3 | 2 | 349 | 0.007142857 | 0.0017634019 | 2.018140 | GGAGCC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| ESRP2 | 5 | 731 | 0.014285714 | 0.0036880290 | 1.953651 | GGGAAG,GGGGAG,UGGGGA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| HNRNPH3 | 17 | 2496 | 0.042857143 | 0.0125806127 | 1.768333 | AUCGGG,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,UGGGUG,UGUGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | AGGUAG | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| YTHDC1 | 7 | 1254 | 0.019047619 | 0.0063230552 | 1.590917 | GACUGC,GAGUGC,GGCUGC,GGGUGC,UCCUGC,UGGUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGG | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| G3BP2 | 2 | 490 | 0.007142857 | 0.0024738009 | 1.529772 | GGAUAA,GGAUGG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| CELF5 | 3 | 669 | 0.009523810 | 0.0033756550 | 1.496371 | GUGUGG,GUGUUU,UGUGUG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| HNRNPH2 | 18 | 3198 | 0.045238095 | 0.0161174929 | 1.488911 | AUCGGG,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,UGGGGU,UGGGUG,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPH1 | 19 | 3406 | 0.047619048 | 0.0171654575 | 1.472030 | AUCGGG,GAAGGU,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,UGGGGU,UGGGUG,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| CELF6 | 6 | 1196 | 0.016666667 | 0.0060308343 | 1.466536 | GUGAGG,GUGGGG,GUGUGG,UGUGGG,UGUGUG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| FUS | 9 | 1711 | 0.023809524 | 0.0086255542 | 1.464850 | CGGUGA,CGGUGG,GGGUGA,GGGUGC,GGGUGG,UGGUGG | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| SRSF9 | 25 | 4608 | 0.061904762 | 0.0232214833 | 1.414590 | GAAGCC,GGAAGG,GGAGCC,GGAGGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCC,GGUGGC,UGAAAG,UGAAGC,UGAGAA,UGAGAG,UGGAGG,UGGUGC,UGGUGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| RBM24 | 4 | 888 | 0.011904762 | 0.0044790407 | 1.410277 | AGAGUG,GAGUGG,GUGUGG,UGUGUG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | AAGACG,GAGACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| HNRNPF | 17 | 3360 | 0.042857143 | 0.0169336961 | 1.339639 | AUGGGG,GAAGGU,GAGGGG,GGAAGG,GGAGGG,GGAUGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,UGGGGU,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| CELF4 | 3 | 776 | 0.009523810 | 0.0039147521 | 1.282618 | GUGUGG,GUGUUU,UGUGUG | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| SAMD4A | 3 | 790 | 0.009523810 | 0.0039852882 | 1.256855 | CGGGAA,GCGGGA,GCUGGU | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| RC3H1 | 2 | 631 | 0.007142857 | 0.0031841999 | 1.165570 | CCUUCU,UCCCUU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| G3BP1 | 15 | 3431 | 0.038095238 | 0.0172914148 | 1.139555 | ACGCAG,AGGCAC,AGGCCC,CAGGCA,CAUCGG,CCAGGC,CCCAGG,CCCCAG,CCCUCC,CCGGCC,CGGCCC | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
| RBM46 | 4 | 1091 | 0.011904762 | 0.0055018138 | 1.113560 | AUCAUU,AUGAAG,GAUCAU,GAUGAA | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| RBM4 | 4 | 1094 | 0.011904762 | 0.0055169287 | 1.109602 | CCUUCU,CUUCCU,UCCUUC,UUCCUU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| LIN28A | 3 | 900 | 0.009523810 | 0.0045395002 | 1.069005 | GGAGGG,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| AGO2 | 2 | 677 | 0.007142857 | 0.0034159613 | 1.064210 | AAAGUG,AGUGCU | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| ZRANB2 | 5 | 1360 | 0.014285714 | 0.0068571141 | 1.058900 | AGGUAG,GGGUGA,GGUGGU,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| RBM5 | 9 | 2359 | 0.023809524 | 0.0118903668 | 1.001746 | AAGGUA,AGGGAG,AGGGUG,CUUCUC,GAAGGU,GAGGGA,GGUGGU,UUCUCU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.