ENSG00000144935:+:3:142748257:142781029

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000144935:+:3:142748257:142781029 ENSG00000144935 ENST00000476941 + 3 142748258 142781029 531 AAACUAAUGGAACGAAUUCAGAAUCCUGAGUAUUCAACAACUAUGGAUGUUGCACCUGUCAUUUUAGCUGCUCAUCGUAACAACUAUGAAAUUCUUACAAUGCUCUUAAAACAGGAUGUAUCUCUACCCAAGCCCCAUGCAGUUGGCUGUGAAUGCACAUUGUGUUCUGCAAAAAACAAAAAGGAUAGCCUCCGGCAUUCCAGGUUUCGUCUUGAUAUAUAUCGAUGUUUGGCCAGUCCAGCUCUAAUAAUGUUAACAGAGGAGGAUCCAAUUCUGAGAGCAUUUGAACUUAGUGCUGAUUUAAAAGAACUAAGUCUUGUGGAGGUGGAAUUCAGGAAUGAUUAUGAGGAACUAGCCCGGCAAUGUAAAAUGUUUGCUAAGGAUUUACUUGCACAAGCCCGGAAUUCUCGUGAAUUGGAAGUUAUUCUAAACCAUACGUCUAGUGACGAGCCUCUUGACAAACGGGGAUUAUUAGAAGAAAGAAUGAAUUUAAGUCGUCUAAAACUUGCUAUCAAAUAUAACCAGAAAGAGAAACUAAUGGAACGAAUUCAGAAUCCUGAGUAUUCAACAACUAUGGAUGU circ
ENSG00000144935:+:3:142748257:142781029 ENSG00000144935 ENST00000476941 + 3 142748258 142781029 22 ACCAGAAAGAGAAACUAAUGGA bsj
ENSG00000144935:+:3:142748257:142781029 ENSG00000144935 ENST00000476941 + 3 142748058 142748267 210 AUGAUUACAUUGCAUUUAUUAAUUAGAGUUAAGUUUUGAGGUUUCAAAGAAAAAUUUAGUCCAAGCAAAAUGUUUAACAUAUUCCUUAAAUAAUUCUUAAGUUCUUUGUGCCUUCCUAUUUUUUCAUUUCAUUCUUCAGAUAAAUAUAUUUUUUGAAGUCACAAAUAAUAACUUUGGACAUUUAUAUAAAUAUUUUUCAGAAACUAAUGG ie_up
ENSG00000144935:+:3:142748257:142781029 ENSG00000144935 ENST00000476941 + 3 142781020 142781229 210 CCAGAAAGAGGUAUGAGGCUUUCUGUAAUAUAUUUAAAUUAUUUUCUCUACAGUAGUCUAGUGGCUCAGGGCAAAGGCUUUGGAGUAACUCAUCUGGGUUAAGAUCCUAGUUCUGCUUCCUAAAAAUUGUGUGUCUUGGGAUAGUUAUUGAAUCUGUUUGAGCUUUUGUUUUAAUAAUUAAUUAAGAAUAUAUACUAAAAGGGUUUAGCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 3 407 0.007532957 0.0005912752 3.671315 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
AKAP1 3 426 0.007532957 0.0006188101 3.605648 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 2 497 0.005649718 0.0007217036 2.968700 GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 5 1283 0.011299435 0.0018607779 2.602273 AAUAUA,AUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPA0 1 453 0.003766478 0.0006579386 2.517191 AAUUUA AAUUUA,AGAUAU,AGUAGG
ZCRB1 5 1605 0.011299435 0.0023274215 2.279446 AUUUAA,GAUUUA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
G3BP2 5 1644 0.011299435 0.0023839405 2.244831 AGGAUA,AGGAUG,AGGAUU,GGAUAG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
YBX2 4 1480 0.009416196 0.0021462711 2.133312 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC3 3 1234 0.007532957 0.0017897669 2.073445 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ERI1 1 632 0.003766478 0.0009173461 2.037678 UUCAGA UUCAGA,UUUCAG
NONO 3 1498 0.007532957 0.0021723567 1.793955 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
KHDRBS1 9 4064 0.018832392 0.0058910141 1.676628 AUUUAA,AUUUAC,CUAAAA,UAAAAC,UAAAAG,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
IGHMBP2 1 813 0.003766478 0.0011796520 1.674855 AAAAAA AAAAAA
PABPN1 2 1222 0.005649718 0.0017723764 1.672494 AAAAGA,AGAAGA AAAAGA,AGAAGA
PABPC4 2 1251 0.005649718 0.0018144033 1.638684 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM41 2 1318 0.005649718 0.0019115000 1.563474 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 5 2654 0.011299435 0.0038476365 1.554206 GAAUGA,GUGAAU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF1 4 2391 0.009416196 0.0034664959 1.441666 UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CSTF2 3 1967 0.007532957 0.0028520334 1.401225 UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SNRPB2 1 991 0.003766478 0.0014376103 1.389544 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM6 1 1054 0.003766478 0.0015289102 1.300713 AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM3 3 2152 0.007532957 0.0031201361 1.271607 AAAACU,AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC1 7 4443 0.015065913 0.0064402624 1.226097 AAAAAA,AAAAAC,ACAAAC,ACGAAU,ACUAAU,CAAAUA,CUAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 11 6871 0.022598870 0.0099589296 1.182188 AAAGAA,AAGAAA,AGAAAG,AGAAGA,AGAGGA,GAAAGA,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PUM1 9 5823 0.018832392 0.0084401638 1.157873 AAUGUU,CAGAAU,CCAGAA,GAAUUG,GUCCAG,UAAUGU,UAUAUA,UGUAAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
EIF4B 1 1179 0.003766478 0.0017100607 1.139169 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC5 3 2400 0.007532957 0.0034795387 1.114320 AGAAAG,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP2 13 8408 0.026365348 0.0121863560 1.113376 AAAAAC,AAAACA,AAAUUC,AAUUCA,ACAAAC,CAAUUC,CCAUAC,GAAUUC,GCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
IGF2BP3 7 4815 0.015065913 0.0069793662 1.110120 AAAAAC,AAAACA,AAAUUC,AAUUCA,ACAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
AGO2 2 1830 0.005649718 0.0026534924 1.090286 AAAAAA,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SNRNP70 1 1237 0.003766478 0.0017941145 1.069944 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PUM2 2 1890 0.005649718 0.0027404447 1.043769 UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM3 1 20 0.09090909 0.001375426 6.046474 GAAACU AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
SRSF10 3 160 0.18181818 0.010544931 4.107875 AAGAGA,AGAGAA,GAGAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF7 1 128 0.09090909 0.008449044 3.427565 AGAGAA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF2 2 479 0.13636364 0.031438302 2.116864 AAGAGA,AGAGAA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.13636364 0.041000786 1.733736 AAGAGA,AGAGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 5 221 0.014285714 0.0011185006 3.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBMS3 8 562 0.021428571 0.0028365578 2.917322 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
A1CF 7 598 0.019047619 0.0030179363 2.657976 AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 AAUUAA,AUUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PPIE 79 9262 0.190476190 0.0466696896 2.029053 AAAAAU,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUU,AUUAAU,AUUAUU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAUAAA,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UAUUUU,UUAAAU,UUAAUA,UUAAUU,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PUM2 5 764 0.014285714 0.0038542926 1.890035 UAAAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAACUA,AUACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PUM1 14 2172 0.035714286 0.0109482064 1.705807 AAUAUU,AAUGUU,AAUUGU,AGAUAA,CCAGAA,GUAAUA,UAAAUA,UAAUAU,UAUAUA,UGUAAU,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ELAVL3 11 1928 0.028571429 0.0097188634 1.555714 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
KHDRBS3 9 1646 0.023809524 0.0082980653 1.520692 AAAUAA,AGAUAA,GAUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,GUUUUG,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUUUAA,CAAAAU,CUAAAA,UAAAAA,UAAAAG,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL2 52 9826 0.126190476 0.0495112858 1.349774 AAUUUA,AUAUUU,AUUAUU,AUUUAA,AUUUAG,AUUUAU,AUUUUC,AUUUUU,CUUUCU,GUUUUA,UAAGUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUUGA,UAUUUA,UAUUUU,UCAUUU,UUAAGU,UUAAUU,UUAUAU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUUAAU,UUUAGU,UUUAUA,UUUAUU,UUUCAU,UUUUAA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAUUUA,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAAGAA,AAGAAA,AAGAGG,AGAAAG,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,AGAAAG AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 AGUCAC,UCAUUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,GUUUUG,UGUGUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AAAUUU,AGUUUU,AUUUUC,AUUUUU,CUUUUG,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUCA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUAAU,AGUAAC,AUACUA,UACUAA,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUUCC,CUUCCU,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUGU,UGUGUG,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 ACAAAU,ACUAAU,AGAAAA,CAAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
KHSRP 25 5764 0.061904762 0.0290457477 1.091723 AUAUUU,AUUAUU,AUUUAU,CCUUCC,CUGCUU,GCCUUC,GCUUCC,GUGUGU,UAUAUU,UAUUUA,UAUUUU,UGCUUC,UGUGUG,UUAUUA,UUAUUU,UUGUGU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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