ENSG00000144741:+:3:66262050:66346408

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000144741:+:3:66262050:66346408 ENSG00000144741 MSTRG.23213.14 + 3 66262051 66346408 198 GUUGCCUGCCUGAUUCGAGUUCCAUCUGAAGUGGUUAAGCAGAGGGCACAGGUAUCUGCUUCUACAAGAACAUUUCAGAUUUUCUCUAACAUCUUAUAUGAAGAGGGUAUCCAAGGGUUGUAUCGAGGCUAUAAAAGCACAGUUUUAAGAGAGAUUCCUUUUUCUUUGGUCCAGUUUCCCUUAUGGGAGUCCUUAAAAGUUGCCUGCCUGAUUCGAGUUCCAUCUGAAGUGGUUAAGCAGAGGGCACA circ
ENSG00000144741:+:3:66262050:66346408 ENSG00000144741 MSTRG.23213.14 + 3 66262051 66346408 22 AGUCCUUAAAAGUUGCCUGCCU bsj
ENSG00000144741:+:3:66262050:66346408 ENSG00000144741 MSTRG.23213.14 + 3 66261851 66262060 210 GAAAGGUUCUGGGCUGACAAAACAAUGUACAUGCUUUAAGGGUCCAAGAGUUUUAGGUUAAAAAAAAAAAAAGAAACUUUUUGACAUCUUGCAGUAAGCCUACAUAUUAUACCUUUUUACUACAAUUUUUGCUUACCAAAAAAUUUCAAUUUUUAUAGCAGUUAUUUACUUUUUAGGAUAUAAUCAAAUUUGUCUUUUAGGUUGCCUGCC ie_up
ENSG00000144741:+:3:66262050:66346408 ENSG00000144741 MSTRG.23213.14 + 3 66346399 66346608 210 GUCCUUAAAAGUAAGUUUCUCAGUCUUCACAUAAAAUUUGUCUCUAAUUAUAACAUACCUAAUAGUUUGAGUGUGGAAGAGUAGAACAUAAUGUUGACUAGAAGUUCAGCAACUCAAACCUAUUAGCAGUUGAAAAUAUAUUUUAUGUGUGAUUUACAUGCCAUUUCAGCCUUUUAAACUUGUUCAGGUGGCUGUGCUCCUAGGAAAUAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 2 632 0.01515152 0.0009173461 4.045852 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBMY1A1 1 489 0.01010101 0.0007101099 3.830313 ACAAGA ACAAGA,CAAGAC
MATR3 2 739 0.01515152 0.0010724109 3.820532 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM6 2 1054 0.01515152 0.0015289102 3.308887 AUCCAA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
IGF2BP1 1 831 0.01010101 0.0012057377 3.066512 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
YBX2 2 1480 0.01515152 0.0021462711 2.819558 AACAUC,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
U2AF2 1 1477 0.01010101 0.0021419234 2.237521 UUUUUC UUUUCC,UUUUUC,UUUUUU
CPEB2 2 2261 0.01515152 0.0032780993 2.208531 CCUUUU,CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 1 1553 0.01010101 0.0022520629 2.165181 UUUUUC UUUUUC,UUUUUG,UUUUUU
KHDRBS1 4 4064 0.02525253 0.0058910141 2.099840 AUAAAA,UAAAAG,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ZNF638 1 1773 0.01010101 0.0025708878 1.974161 GGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RC3H1 1 1786 0.01010101 0.0025897275 1.963627 UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
KHDRBS2 1 1858 0.01010101 0.0026940701 1.906640 AUAAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPCL1 1 2062 0.01010101 0.0029897078 1.756423 CUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPA3 1 2140 0.01010101 0.0031027457 1.702882 CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PTBP1 14 16854 0.07575758 0.0244263326 1.632953 AUUUUC,CAUCUU,CCAUCU,CCUUUU,CUUUUU,UCCAUC,UUCCUU,UUCUCU,UUCUUU,UUUCCC,UUUCUU,UUUUCU,UUUUUC ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
TIAL1 8 10182 0.04545455 0.0147572438 1.623001 AGUUUU,AUUUUC,CAGUUU,CUUUUU,UUUCAG,UUUUAA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 7 9206 0.04040404 0.0133428208 1.598436 AUUUUC,CUUUUU,GUUUUA,UCCUUU,UUUUCU,UUUUUC AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPC 2 3471 0.01515152 0.0050316361 1.590363 CUUUUU,UUUUUC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 3 5105 0.02020202 0.0073996354 1.448973 GUAUCU,UGUAUC,UUGUAU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL2 13 18468 0.07070707 0.0267653478 1.401488 AUUUUC,CUUAUA,CUUUUU,GAUUUU,GUUUUA,UCUUAU,UUAUAU,UUCUUU,UUGUAU,UUUAAG,UUUCUU,UUUUAA,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM5 4 6879 0.02525253 0.0099705232 1.340687 AGGGUA,CAAGGG,GAGGGU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
QKI 1 2805 0.01010101 0.0040664663 1.312652 CUAACA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
YBX1 4 7119 0.02525253 0.0103183321 1.291218 AACAUC,ACAUCU,CAUCUG,GCCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
SNRPA 4 7380 0.02525253 0.0106965744 1.239279 AUUCCU,GAUUCC,GGGUAU,GUUUCC ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
NELFE 1 3028 0.01010101 0.0043896388 1.202325 UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM4 1 3065 0.01010101 0.0044432593 1.184809 UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ZRANB2 1 3173 0.01010101 0.0045997733 1.134865 AGGUAU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
KHDRBS3 1 3429 0.01010101 0.0049707696 1.022958 AUAAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
KHDRBS1 1 14 0.09090909 0.0009824469 6.531901 UAAAAG AUUUAA,CUAAAA,GAAAAC,UAAAAA,UAAAAG,UUAAAA,UUAAAU
ZFP36 1 126 0.09090909 0.0083180508 3.450107 AAAAGU AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGHMBP2 9 350 0.023809524 0.0017684401 3.750989 AAAAAA AAAAAA
PABPC4 10 462 0.026190476 0.0023327287 3.488952 AAAAAA,AAAAAG AAAAAA,AAAAAG
AGO2 9 677 0.023809524 0.0034159613 2.801175 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SART3 9 777 0.023809524 0.0039197904 2.602690 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM41 5 502 0.014285714 0.0025342604 2.494937 UACAUG,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
SYNCRIP 9 1041 0.023809524 0.0052498992 2.181177 AAAAAA AAAAAA,UUUUUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PABPC1 11 1321 0.028571429 0.0066606207 2.100845 AAAAAA,CAAACC,CUAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPU 9 1136 0.023809524 0.0057285369 2.055300 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
HNRNPD 12 1488 0.030952381 0.0075020153 2.044700 AAAAAA,UAUUUA,UUAGGA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AUAGCA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM24 6 888 0.016666667 0.0044790407 1.895704 AGUGUG,GAGUGU,GUGUGA,GUGUGG,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
DAZAP1 21 2878 0.052380952 0.0145052398 1.852468 AAAAAA,AGGAAA,AGGAUA,AGGUUA,AGGUUG,AGUAAG,AGUUUG,UAGGAA,UAGGAU,UAGGUU,UAGUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAU,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ELAVL4 18 2916 0.045238095 0.0146966949 1.622046 AAAAAA,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUUUAU,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPC 11 2006 0.028571429 0.0101118501 1.498526 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 9 1711 0.023809524 0.0086255542 1.464850 AAAAAA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPCL1 7 1381 0.019047619 0.0069629182 1.451847 AUUUUU,CUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
PPIE 51 9262 0.123809524 0.0466696896 1.407565 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUU,AAUAUA,AAUUAU,AAUUUU,AUAAAA,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAUA,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAUUA,UAUAAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAUAA,UUAUUU,UUUAAA,UUUAUA,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CCUUUU,CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUACAU,UACAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGUGG,AGUAAG,UAGGAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUU,CUUUUA,CUUUUU,UAUUUU,UUAUUU,UUUAAA,UUUCAG,UUUUAA,UUUUAU,UUUUUA,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 46 9826 0.111904762 0.0495112858 1.176442 AAUUUG,AAUUUU,AUAUUU,AUUUAC,AUUUUA,AUUUUU,CUUUAA,CUUUUA,CUUUUU,GAUUUA,GUUUUA,UAAGUU,UACUUU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCUUUU,UGAUUU,UUACUU,UUAUAC,UUAUGU,UUAUUU,UUUAAG,UUUACU,UUUAUA,UUUAUG,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,AUUUAC,UAAAAA,UAAAAG,UUAAAA,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAAAAA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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