ENSG00000143207:-:1:175986942:176085890

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000143207:-:1:175986942:176085890 ENSG00000143207 ENST00000649803 - 1 175986943 176085890 1107 ACAAAGAAACAGCCUUGGUAUAAUAGCACGUUAGCAUCAAGACGAAAACGACUUACUGCUCAUUUUGAAGACUUGGAGCAGUGUUACUUUUCUACAAGGAUGUCUCGUAUCUCAGAUGACAGUCGAACUGCAAGCCAGUUGGAUGAAUUUCAGGAAUGCUUGUCCAAGUUUACUCGAUAUAAUUCAGUACGACCUUUAGCCACAUUGUCAUAUGCUAGUGAUCUCUAUAAUGGUUCCAGUAUAGUCUCUAGUAUUGAAUUUGACCGGGAUUGUGACUAUUUUGCGAUUGCUGGAGUUACAAAGAAGAUUAAAGUCUAUGAAUAUGACACUGUCAUCCAGGAUGCAGUGGAUAUUCAUUACCCUGAGAAUGAAAUGACCUGCAAUUCGAAAAUCAGCUGUAUCAGUUGGAGUAGUUACCAUAAGAACCUGUUAGCUAGCAGUGAUUAUGAAGGCACUGUUAUUUUAUGGGAUGGAUUCACAGGACAGAGGUCAAAGGUCUAUCAGGAGCAUGAGAAGAGGUGUUGGAGUGUUGACUUUAAUUUGAUGGAUCCUAAACUCUUGGCUUCAGGUUCUGAUGAUGCAAAAGUGAAGCUGUGGUCUACCAAUCUAGACAACUCAGUGGCAAGCAUUGAGGCAAAGGCUAAUGUGUGCUGUGUUAAAUUCAGCCCCUCUUCCAGAUACCAUUUGGCUUUCGGCUGUGCAGAUCACUGUGUCCACUACUAUGAUCUUCGUAACACUAAACAGCCAAUCAUGGUAUUCAAAGGACACCGUAAAGCAGUCUCUUAUGCAAAGUUUGUGAGUGGUGAGGAAAUUGUCUCUGCCUCAACAGACAGUCAGCUAAAACUGUGGAAUGUAGGGAAACCAUACUGCCUACGUUCCUUCAAGGGUCAUAUCAAUGAAAAAAACUUUGUAGGCCUGGCUUCCAAUGGAGAUUAUAUAGCUUGUGGAAGUGAAAAUAACUCUCUCUACCUGUACUAUAAAGGACUUUCUAAGACUUUGCUAACUUUUAAGUUUGAUACAGUCAAAAGUGUUCUCGACAAAGACCGAAAAGAAGAUGAUACAAAUGAAUUUGUUAGUGCUGUGUGCUGGAGGGCACUACCAGAUGGGACAAAGAAACAGCCUUGGUAUAAUAGCACGUUAGCAUCAAGACGAAAACG circ
ENSG00000143207:-:1:175986942:176085890 ENSG00000143207 ENST00000649803 - 1 175986943 176085890 22 UACCAGAUGGGACAAAGAAACA bsj
ENSG00000143207:-:1:175986942:176085890 ENSG00000143207 ENST00000649803 - 1 176085881 176086090 210 AAUCAUUCUGCGAAUGAAUUUGGUUUCUAUUUUCAUGUUAAAAGAUAAAUUGGAAAAUAUCUCAGAAUUACAGUUUUUUACUAUUUGUGAUCAUUUUACUGUGAUGAACUUCUGAGGGUAAAUGCUCAAACAUUUGAGUAUUCUGUGCAAAAGAAGAGUAUUGUUUAUUCUAAGUUUUGUGUCUUUUCUUAUUAUUUUAGACAAAGAAAC ie_up
ENSG00000143207:-:1:175986942:176085890 ENSG00000143207 ENST00000649803 - 1 175986743 175986952 210 ACCAGAUGGGGUAAGUUUUCAUAUCAGUUUUUUCACCUUGGGAUCUCAUAUUAUGCAUUAUGUAUACACAGGGUUUGAUUAAAUUUUAAAAUAUAAAUUGGUAUGUGGUAUGUACUUUUUAAAAAACUUUGUAAUGUGUCACCAAAGACAAUAGGCAUUUUAGGUAGUGAUUGAAAUGCAUAGUAAUAGAGCAAUGUCAUGGUGUCAUAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 2 267 0.002710027 0.0003883867 2.802742 CUCUCU CUCUCU
HNRNPA1L2 2 314 0.002710027 0.0004564992 2.569623 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ANKHD1 2 339 0.002710027 0.0004927293 2.459440 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBMS1 3 497 0.003613369 0.0007217036 2.323866 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
FXR1 2 411 0.002710027 0.0005970720 2.182330 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
NXF1 1 286 0.001806685 0.0004159215 2.118961 AACCUG AACCUG
HNRNPAB 11 1782 0.010840108 0.0025839306 2.068740 AAAGAC,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CNOT4 1 314 0.001806685 0.0004564992 1.984660 GACAGA GACAGA
RBM28 4 822 0.004516712 0.0011926949 1.921048 AGUAGU,GAGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
AKAP1 1 426 0.001806685 0.0006188101 1.545776 UAUAUA AUAUAU,UAUAUA
SRSF11 2 688 0.002710027 0.0009985015 1.440471 AAGAAG AAGAAG
A1CF 6 1642 0.006323397 0.0023810421 1.409107 AGUAUA,AUAAUU,AUCAGU,CAGUAU,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CELF5 5 1415 0.005420054 0.0020520728 1.401225 GUGUUG,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
EIF4B 4 1179 0.004516712 0.0017100607 1.401225 CUUGGA,GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM3 8 2152 0.008130081 0.0031201361 1.381661 AAAACG,AAAACU,AAACGA,AAGACG,AAGACU,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM46 18 4554 0.017163505 0.0066011240 1.378561 AAUCAU,AAUGAA,AUCAAG,AUCAAU,AUCAUG,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPN1 4 1222 0.004516712 0.0017723764 1.349588 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMY1A1 1 489 0.001806685 0.0007101099 1.347230 CAAGAC ACAAGA,CAAGAC
CELF4 6 1782 0.006323397 0.0025839306 1.291132 GGUGUU,GUGUUG,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ACO1 4 1283 0.004516712 0.0018607779 1.279367 CAGUGA,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
AGO2 6 1830 0.006323397 0.0026534924 1.252807 AAAAAA,AAAGUG,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
IGHMBP2 2 813 0.002710027 0.0011796520 1.199946 AAAAAA AAAAAA
G3BP2 5 1644 0.005420054 0.0023839405 1.184959 AGGAUG,GGAUGA,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
NELFE 10 3028 0.009936766 0.0043896388 1.178674 CUCUCU,CUGGCU,GCUAAC,GGCUAA,GUCUCU,UCUCUC,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CELF6 9 2997 0.009033424 0.0043447134 1.056012 GUGAGG,GUGGUG,GUGUUG,UGUGAG,UGUGGU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
SNRNP70 3 1237 0.003613369 0.0017941145 1.010073 AUCAAG,AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR2 2 29 0.13636364 0.001964894 6.116864 GACAAA,GGACAA AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA
HNRNPAB 1 20 0.09090909 0.001375426 6.046474 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA
SRSF7 2 128 0.13636364 0.008449044 4.012527 GACAAA,GGACAA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
HNRNPF 1 90 0.09090909 0.005960178 3.930997 AUGGGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
FMR1 1 117 0.09090909 0.007728583 3.556149 GGACAA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF9 1 134 0.09090909 0.008842023 3.361976 GGACAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF10 1 160 0.09090909 0.010544931 3.107875 GACAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GGACAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPAB 8 351 0.021428571 0.0017734784 3.594882 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PABPN1 3 178 0.009523810 0.0009018541 3.400573 AAAAGA,AGAAGA AAAAGA,AGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AAUCAU,AAUGAA,AUCAUU,AUGAAU,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
TIAL1 39 5597 0.095238095 0.0282043531 1.755621 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,CAGUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF2 5 881 0.014285714 0.0044437727 1.684716 AUGUGU,GUAUGU,UAUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 UAAAAA,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
QKI 4 904 0.011904762 0.0045596534 1.384543 AAUCAU,CUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAA,GACAAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG,AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAGACA,UAGACA,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SRSF10 14 2937 0.035714286 0.0148024990 1.270661 AAAAGA,AAAGAA,AAAGAC,AAGAAA,AAGAAG,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ELAVL2 46 9826 0.111904762 0.0495112858 1.176442 AAUUUG,AAUUUU,AUUAUU,AUUUUA,AUUUUC,CAUUUU,CUUUUU,GUAUUG,GUUUUC,GUUUUU,UAAGUU,UACUUU,UAUUAU,UAUUGU,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UUAUGU,UUAUUU,UUGAUU,UUUACU,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 43 9262 0.104761905 0.0466696896 1.166556 AAAAAA,AAAAUA,AAAUAU,AAAUUU,AAUAUA,AAUUUU,AUAAAU,AUAUAA,AUAUUA,AUUAAA,AUUAUU,AUUUUA,UAAAAA,UAAAAU,UAAAUU,UAUAAA,UAUUAU,UAUUUU,UUAAAA,UUAAAU,UUAUUA,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GAAUUA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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