circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000122566:-:7:26193250:26193373
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000122566:-:7:26193250:26193373 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193251 | 26193373 | 123 | GAAAUUAUGGAAGUGGAAAUUACAAUGAUUUUGGAAAUUAUAACCAGCAACCUUCUAACUACGGUCCAAUGAAGAGUGGAAACUUUGGUGGUAGCAGGAACAUGGGGGGACCAUAUGGUGGAGGAAAUUAUGGAAGUGGAAAUUACAAUGAUUUUGGAAAUUAUAACCAGCAA | circ |
| ENSG00000122566:-:7:26193250:26193373 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193251 | 26193373 | 22 | AUAUGGUGGAGGAAAUUAUGGA | bsj |
| ENSG00000122566:-:7:26193250:26193373 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193364 | 26193573 | 210 | UAAUAAAUUCACCUGCAACCUUUAUGUGGGAAUUUGGAAUUAAUGUCUUUGUAACACUUGAUCUUUUGUUUCCAUGUUUGUCACUAGAUGCCCAUAAAAUUUGUGGAUAAGUGUUUGCUUUUAUUUGUUUUUAUGGGAGCUUUGUCCUAAGUCCUUGGUUUAAUGUUUGUAUUGUUCUGAGUAUUCCAAUUUUUUAAUAGGAAAUUAUGG | ie_up |
| ENSG00000122566:-:7:26193250:26193373 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193051 | 26193260 | 210 | UAUGGUGGAGGUAAUUUAUAAAAAUUGAGGUUAUUCAGAUUUUUGUGAUUAAAGGAUUAGCCUUUUGUGACUUAAAGGGAAGAUAACAUACUAAGUAGUUUGUACUGUGGGCAGUGCUCCAUGUACGGUCUUAGUGAAAAUAAAGAAAUUUUGCAUAAAUCUCCACAGAAGUACUCAGCAAGCAGUUAUGACAUCAAAUUGGGAUUAGGG | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM42 | 2 | 407 | 0.02439024 | 0.0005912752 | 5.366331 | AACUAC,ACUACG | AACUAA,AACUAC,ACUAAG,ACUACG |
| NONO | 2 | 1498 | 0.02439024 | 0.0021723567 | 3.488971 | AGGAAC,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| HNRNPM | 1 | 999 | 0.01626016 | 0.0014492040 | 3.488009 | GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| EIF4B | 1 | 1179 | 0.01626016 | 0.0017100607 | 3.249222 | UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| PABPC5 | 3 | 2400 | 0.03252033 | 0.0034795387 | 3.224374 | GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| RBM24 | 2 | 2357 | 0.02439024 | 0.0034172229 | 2.835408 | AGAGUG,GAGUGG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| ZRANB2 | 3 | 3173 | 0.03252033 | 0.0045997733 | 2.821707 | GGUGGU,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| RC3H1 | 1 | 1786 | 0.01626016 | 0.0025897275 | 2.650469 | CCUUCU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| RBM46 | 4 | 4554 | 0.04065041 | 0.0066011240 | 2.622486 | AAUGAA,AAUGAU,AUGAAG,AUGAUU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| FUS | 3 | 3648 | 0.03252033 | 0.0052881452 | 2.620508 | GGGGGG,UGGUGG | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| HNRNPU | 1 | 1965 | 0.01626016 | 0.0028491350 | 2.512746 | GGGGGG | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| RBM3 | 1 | 2152 | 0.01626016 | 0.0031201361 | 2.381661 | GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| LIN28A | 2 | 4315 | 0.02439024 | 0.0062547643 | 1.963277 | GGAGGA,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| RBM4 | 1 | 3065 | 0.01626016 | 0.0044432593 | 1.871651 | CCUUCU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| SFPQ | 13 | 24050 | 0.11382114 | 0.0348548043 | 1.707339 | AGGAAC,GAAGAG,GAGGAA,GGAGGA,GGGGAC,GGGGGA,GGGGGG,UGAUUU,UGGAAG,UGGAGG,UGGUGG,UUGGUG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| HNRNPC | 1 | 3471 | 0.01626016 | 0.0050316361 | 1.692242 | GGGGGG | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PCBP2 | 5 | 11045 | 0.04878049 | 0.0160079069 | 1.607520 | AAAUUA,AAUUAC,GGGGGG | AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| ELAVL1 | 2 | 5554 | 0.02439024 | 0.0080503280 | 1.599185 | UGAUUU,UUUGGU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| SRSF4 | 1 | 3740 | 0.01626016 | 0.0054214720 | 1.584585 | GAGGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| NOVA1 | 1 | 3872 | 0.01626016 | 0.0056127669 | 1.534558 | GGGGGG | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| HNRNPH2 | 4 | 9711 | 0.04065041 | 0.0140746688 | 1.530169 | GGAGGA,GGGGGA,GGGGGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| DAZAP1 | 2 | 5964 | 0.02439024 | 0.0086445016 | 1.496449 | AGGAAA,GGGGGG | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| NOVA2 | 1 | 4013 | 0.01626016 | 0.0058171047 | 1.482969 | GGGGGG | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| SRSF9 | 9 | 20254 | 0.08130081 | 0.0293536261 | 1.469731 | AGGAAA,AGGAAC,GGAACA,GGACCA,GGAGGA,GGUGGA,UGGAGG,UGGUGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| HNRNPF | 4 | 10561 | 0.04065041 | 0.0153064921 | 1.409126 | AUGGGG,GAGGAA,GGAGGA,GGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 4 | 10717 | 0.04065041 | 0.0155325680 | 1.387973 | GAGGAA,GGAGGA,GGGGGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| PCBP1 | 5 | 13384 | 0.04878049 | 0.0193975949 | 1.330426 | AAAUUA,AAUUAC,GGGGGG | AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| PPIE | 7 | 18315 | 0.06504065 | 0.0265436196 | 1.292977 | AAAUUA,AAUUAU,AUUAUA,UUAUAA | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| TRA2A | 2 | 6871 | 0.02439024 | 0.0099589296 | 1.292242 | GAAGAG,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| RBM5 | 2 | 6879 | 0.02439024 | 0.0099705232 | 1.290563 | GGGGGG,GGUGGU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| YBX1 | 2 | 7119 | 0.02439024 | 0.0103183321 | 1.241094 | CAGCAA,CCAGCA | AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU |
| HNRNPH3 | 2 | 7688 | 0.02439024 | 0.0111429292 | 1.130176 | GGAGGA,GGGGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| NONO | 1 | 11 | 0.09090909 | 0.0007859576 | 6.853829 | GAGGAA | AGAGGA,AGGAAC,GAGGAA |
| SRSF4 | 1 | 18 | 0.09090909 | 0.0012444328 | 6.190864 | GAGGAA | AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| LIN28A | 2 | 35 | 0.13636364 | 0.0023578727 | 5.853829 | GGAGGA,UGGAGG | AGGAGA,AGGAGU,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG,UGGAGU |
| DAZAP1 | 1 | 36 | 0.09090909 | 0.0024233691 | 5.229338 | AGGAAA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA |
| SRSF5 | 1 | 44 | 0.09090909 | 0.0029473408 | 4.946939 | GAGGAA | AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC |
| TRA2B | 1 | 51 | 0.09090909 | 0.0034058161 | 4.738352 | AGGAAA | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| TRA2A | 1 | 54 | 0.09090909 | 0.0036023055 | 4.657432 | GAGGAA | AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| HNRNPF | 2 | 90 | 0.13636364 | 0.0059601782 | 4.515960 | GAGGAA,GGAGGA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 2 | 90 | 0.13636364 | 0.0059601782 | 4.515960 | GAGGAA,GGAGGA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPH3 | 1 | 61 | 0.09090909 | 0.0040607807 | 4.484596 | GGAGGA | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| SRSF9 | 3 | 134 | 0.18181818 | 0.0088420225 | 4.361976 | AGGAAA,GGAGGA,UGGAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| SRSF6 | 1 | 68 | 0.09090909 | 0.0045192560 | 4.330267 | GAGGAA | AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG |
| SFPQ | 3 | 153 | 0.18181818 | 0.0100864553 | 4.172005 | GAGGAA,GGAGGA,UGGAGG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| HNRNPA1 | 2 | 119 | 0.13636364 | 0.0078595756 | 4.116864 | GAGGAA,GGAGGA | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.0053052135 | 4.098942 | GGAGGA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| ZFP36 | 1 | 126 | 0.09090909 | 0.0083180508 | 3.450107 | AGGAAA | AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG |
| SRSF7 | 1 | 128 | 0.09090909 | 0.0084490438 | 3.427565 | GAGGAA | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF10 | 1 | 160 | 0.09090909 | 0.0105449306 | 3.107875 | GAGGAA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF2 | 3 | 479 | 0.18181818 | 0.0314383023 | 2.531901 | GAGGAA,GGAGGA,UGGAGG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 4 | 625 | 0.22727273 | 0.0410007860 | 2.470701 | AGGAAA,GAGGAA,GGAGGA,UGGAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| OAS1 | 1 | 35 | 0.004761905 | 0.0001813785 | 4.714464 | GCAUAA | GCAUAA |
| FXR1 | 1 | 69 | 0.004761905 | 0.0003526804 | 3.755106 | AUGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| RBM42 | 1 | 103 | 0.004761905 | 0.0005239823 | 3.183949 | ACUAAG | AACUAA,AACUAC,ACUAAG,ACUACG |
| ZCRB1 | 9 | 666 | 0.023809524 | 0.0033605401 | 2.824774 | AAUUAA,ACUUAA,GAAUUA,GACUUA,GAUUAA,GGAUUA,GGUUUA,GUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| HNRNPA1L2 | 1 | 188 | 0.004761905 | 0.0009522370 | 2.322146 | UUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| AGO1 | 2 | 283 | 0.007142857 | 0.0014308746 | 2.319604 | GAGGUA,UGAGGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| G3BP2 | 4 | 490 | 0.011904762 | 0.0024738009 | 2.266737 | AGGAUU,GGAUAA,GGAUUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| HNRNPA0 | 1 | 200 | 0.004761905 | 0.0010126965 | 2.233337 | AAUUUA | AAUUUA,AGAUAU,AGUAGG |
| EIF4B | 1 | 226 | 0.004761905 | 0.0011436921 | 2.057840 | UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| ERI1 | 1 | 228 | 0.004761905 | 0.0011537686 | 2.045185 | UUCAGA | UUCAGA,UUUCAG |
| PABPC5 | 4 | 596 | 0.011904762 | 0.0030078597 | 1.984730 | AGAAAU,GAAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| YBX2 | 1 | 263 | 0.004761905 | 0.0013301088 | 1.839994 | ACAUCA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| SNRPB2 | 1 | 288 | 0.004761905 | 0.0014560661 | 1.709463 | GUAUUG | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| HNRNPDL | 17 | 2689 | 0.042857143 | 0.0135530028 | 1.660923 | AACCUU,AAUUUA,ACUAAG,ACUAGA,AUUAGC,AUUAGG,CACUAG,CCUUUA,CUAAGU,CUAGAU,GAUUAG,GGAUUA,UAAGUA,UUAGCC | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
| ZRANB2 | 8 | 1360 | 0.021428571 | 0.0068571141 | 1.643862 | AGGGAA,AGGUAA,AGGUUA,CGGUCU,GAGGUU,UAAAGG,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| CELF1 | 6 | 1097 | 0.016666667 | 0.0055320435 | 1.591081 | GUUUGU,UGUUUG | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGC | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| KHDRBS3 | 9 | 1646 | 0.023809524 | 0.0082980653 | 1.520692 | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAG,AUUAAA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | AGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| CSTF2 | 5 | 1022 | 0.014285714 | 0.0051541717 | 1.470761 | GUGUUU,UGUUUG,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| KHDRBS2 | 5 | 1051 | 0.014285714 | 0.0053002821 | 1.430432 | AAUAAA,AUAAAA,UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| ESRP2 | 3 | 731 | 0.009523810 | 0.0036880290 | 1.368689 | GGGAAG,GGGAAU,UGGGAA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| ZFP36L2 | 3 | 774 | 0.009523810 | 0.0039046755 | 1.286336 | AUUUAU,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| HNRNPL | 6 | 1419 | 0.016666667 | 0.0071543732 | 1.220068 | AAAUAA,AAUAAA,ACAUAC,CAUAAA | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| PPIE | 43 | 9262 | 0.104761905 | 0.0466696896 | 1.166556 | AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUA,AAAUUU,AAUAAA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUUAAA,AUUAAU,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAAUU,UAAUAA,UAAUUU,UAUAAA,UUAAUA,UUAUAA,UUAUUU,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| PUM1 | 9 | 2172 | 0.023809524 | 0.0109482064 | 1.120844 | AAUGUU,AGAUAA,UAAUGU,UUAAUG,UUGUAC,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| ELAVL4 | 12 | 2916 | 0.030952381 | 0.0146966949 | 1.074559 | AUUUAU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| SRSF5 | 6 | 1578 | 0.016666667 | 0.0079554615 | 1.066948 | AUAAAG,CACAGA,GGAAGA,UAAAGG,UGCAUA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.