ENSG00000117114:+:1:81836884:81907230

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000117114:+:1:81836884:81907230 ENSG00000117114 ENST00000674492 + 1 81836885 81907230 387 AUAUGAAGAUCAAUGAUGCAGACUGAUGGUUUUGAUGAAGCUGGGCAUUUAUAACUAGAUUCAUUAAGGAAUACAAAGAAAAUACUUAAAGGGAUCAAUAAUGGUGUCUUCUGGUUGCAGAAUGCGAAGUCUGUGGUUUAUCAUUGUAAUCAGCUUCUUACCAAAUACAGAAGGUUUCAGCAGAGCAGCUUUACCAUUUGGGCUGGUGAGGCGAGAAUUAUCCUGUGAAGGUUAUUCUAUAGAUCUGCGAUGCCCGGGCAGUGAUGUCAUCAUGAUUGAGAGCGCUAACUAUGGUCGGACGGAUGACAAGAUUUGUGAUGCUGACCCAUUUCAGAUGGAGAAUACAGACUGCUACCUCCCCGAUGCCUUCAAAAUUAUGACUCAAAGAUAUGAAGAUCAAUGAUGCAGACUGAUGGUUUUGAUGAAGCUGGGCAUUU circ
ENSG00000117114:+:1:81836884:81907230 ENSG00000117114 ENST00000674492 + 1 81836885 81907230 22 AUGACUCAAAGAUAUGAAGAUC bsj
ENSG00000117114:+:1:81836884:81907230 ENSG00000117114 ENST00000674492 + 1 81836685 81836894 210 AAGGCAGUCAACCUUUUUGGGCUUUUGACUGUUUUCAGAAUGUAAGAUUCAGAUAUCCAGUGUAUAGGAGCAGCUUCCAUAGUGGACAUAGAAUCAAAAUAUGUUUUAUAUUCAGGAGAGAGAGAGAGGAACGGAGAGAGAGAAUUGUUUUGUUAUGUAGAAAGACCAUAGAGUAAGUGAUGGAUUUGUUUGUUUUUCAGAUAUGAAGAU ie_up
ENSG00000117114:+:1:81836884:81907230 ENSG00000117114 ENST00000674492 + 1 81907221 81907430 210 UGACUCAAAGGUAAAUAUUCAUGUGUUAAUGUCCCAUUUGAGCUAUUGUAUCCAAAUUAGAAAAAUUAUUACAGUUAUUCCAAAGCGAAUGGAUAUAGACCACAUCCCAGCCUAUUUAUUAAACUGAGUUGGGUUUUUACCUACUAAUGUUGAUAUCUACACUUUAUAUUUUCAUCAACAUUCAAAUAUGUAAAUCAUUCUAAUAUAGCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.005167959 0.0002275250 4.505497 AGGGAU AGGGAU
RBM25 1 268 0.005167959 0.0003898359 3.728656 CGGGCA AUCGGG,CGGGCA,UCGGGC
ERI1 3 632 0.010335917 0.0009173461 3.494056 UUCAGA,UUUCAG UUCAGA,UUUCAG
TUT1 3 678 0.010335917 0.0009840095 3.392850 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
FXR1 1 411 0.005167959 0.0005970720 3.113618 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA0 1 453 0.005167959 0.0006579386 2.973570 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.005167959 0.0007101099 2.863480 ACAAGA ACAAGA,CAAGAC
RBM46 12 4554 0.033591731 0.0066011240 2.347323 AAUGAU,AUCAAU,AUCAUG,AUCAUU,AUGAAG,AUGAUG,AUGAUU,GAUCAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
EIF4B 2 1179 0.007751938 0.0017100607 2.180510 GUCGGA,UCGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZCRB1 3 1605 0.010335917 0.0023274215 2.150862 ACUUAA,GAAUUA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SNRNP70 2 1237 0.007751938 0.0017941145 2.111285 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS3 2 1283 0.007751938 0.0018607779 2.058651 CUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPAB 3 1782 0.010335917 0.0025839306 2.000027 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SNRPB2 1 991 0.005167959 0.0014376103 1.845922 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF6 5 2997 0.015503876 0.0043447134 1.835296 GUGAGG,GUGAUG,UGUGAU,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPM 1 999 0.005167959 0.0014492040 1.834334 AAGGAA AAGGAA,GAAGGA,GGGGGG
ZC3H10 1 1053 0.005167959 0.0015274610 1.758459 GAGCGC CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
ENOX1 5 3195 0.015503876 0.0046316558 1.743029 AAUACA,AUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RC3H1 2 1786 0.007751938 0.0025897275 1.581757 CUUCUG,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZFP36L2 1 1277 0.005167959 0.0018520827 1.480446 AUUUAU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ACO1 1 1283 0.005167959 0.0018607779 1.473689 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM41 1 1318 0.005167959 0.0019115000 1.434889 AUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
FXR2 4 3434 0.012919897 0.0049780156 1.375952 GACAAG,GACGGA,GGACGG,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
YTHDC1 7 5576 0.020671835 0.0080822104 1.354845 GAAUAC,GAAUGC,GACUGC,UGAUGC,UGCUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
NELFE 3 3028 0.010335917 0.0043896388 1.235492 CUGGUU,GCUAAC,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
ZRANB2 3 3173 0.010335917 0.0045997733 1.168032 AGGUUA,AGGUUU,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
PABPC5 2 2400 0.007751938 0.0034795387 1.155661 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP3 5 4815 0.015503876 0.0069793662 1.151461 AAAUAC,AAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
G3BP2 1 1644 0.005167959 0.0023839405 1.116246 GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPL 5 5085 0.015503876 0.0073706513 1.072765 AAAUAC,AAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 1 5 0.09090909 0.0003929788 7.853829 AGAUAU AAUUUA,AGAUAU,AGUAGG
HNRNPD 1 12 0.09090909 0.0008514540 6.738352 AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,UUAGAG,UUAGGA,UUAGGG
HNRNPAB 1 20 0.09090909 0.0013754257 6.046474 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA
HNRNPDL 1 35 0.09090909 0.0023578727 5.268867 AGAUAU AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 AGAUAU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 AGAUAU AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
HNRNPA1 2 119 0.13636364 0.0078595756 4.116864 AGAUAU,CAAAGA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
ZFP36 1 126 0.09090909 0.0083180508 3.450107 CAAAGA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF10 1 160 0.09090909 0.0105449306 3.107875 CAAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 5 228 0.014285714 0.0011537686 3.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM6 4 191 0.011904762 0.0009673519 3.621354 AUCCAA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AGAUAU AAUUUA,AGAUAU,AGUAGG
NONO 4 364 0.011904762 0.0018389762 2.694564 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SSB 5 505 0.014285714 0.0025493753 2.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAG,UAUAGA,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAAAU,UAAAUA,UGUAAA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 17 2172 0.042857143 0.0109482064 1.968841 AAUAUU,AAUGUU,AAUUGU,AGAAUU,AUUGUA,CAGAAU,GAAUUG,GUAAAU,UAAAUA,UAAUAU,UAAUGU,UGUAAA,UGUAGA,UGUAUA,UUAAUG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUUUUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SRSF7 21 2893 0.052380952 0.0145808142 1.844971 AGAGAA,AGAGAG,AGAGGA,AUAGAA,AUAGAC,CGAAUG,GAGAGA,GAGGAA,UCAACA,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRSF10 19 2937 0.047619048 0.0148024990 1.685698 AAAGAC,AGAGAA,AGAGAG,AGAGGA,GAAAGA,GAGAGA,GAGAGG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AGGAGC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
QKI 4 904 0.011904762 0.0045596534 1.384543 AAUCAU,ACUAAU,AUCUAC,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAA,AAUCAU,AUCAAA,AUCAUU,AUGAAG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 AUUUAU,UAUUUA,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,AGAAAG AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 ACUAAU,AGAAAA,CAAAUA,CUAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AGAAAG,AGAGGA,GAAAGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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