ENSG00000155313:+:21:15808808:15849872

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000155313:+:21:15808808:15849872 ENSG00000155313 ENST00000400183 + 21 15808809 15849872 1767 CAAGAUGUGAGUGAGUUUACACACAAAUUAUUAGAUUGGUUAGAAGAUGCCUUCCAAAUGAAAGCUGAAGAGGAGACGGAUGAAGAGAAGCCAAAGAACCCCAUGGUAGAGUUGUUCUAUGGCAGAUUCCUGGCUGUGGGAGUACUUGAAGGUAAAAAAUUUGAAAACACUGAAAUGUUUGGUCAGUACCCACUUCAGGUCAAUGGGUUCAAAGAUCUGCAUGAGUGCCUAGAAGCUGCAAUGAUUGAAGGAGAAAUUGAGUCUUUACAUUCAGAGAAUUCAGGAAAAUCAGGCCAAGAGCAUUGGUUUACUGAAUUACCACCUGUGUUAACAUUUGAAUUGUCAAGAUUUGAAUUUAAUCAGGCAUUGGGAAGACCAGAAAAAAUUCACAACAAAUUAGAAUUUCCCCAAGUUUUAUAUUUGGACAGAUACAUGCACAGAAACAGAGAAAUAACAAGAAUUAAGAGGGAAGAGAUCAAGAGACUGAAAGAUUACCUCACGGUAUUACAACAAAGGCUAGAAAGAUAUUUAAGCUAUGGUUCCGGUCCCAAACGAUUCCCCUUGGUAGAUGUUCUUCAGUAUGCAUUGGAAUUUGCCUCAAGUAAACCUGUUUGCACUUCUCCUGUUGACGAUAUUGACGCUAGUUCCCCACCUAGUGGUUCCAUACCAUCACAGACAUUACCAAGCACAACAGAACAACAGGGAGCCCUAUCUUCAGAACUGCCAAGCACAUCACCUUCAUCAGUUGCUGCCAUUUCAUCGAGAUCAGUAAUACACAAACCAUUUACUCAGUCCCGGAUACCUCCAGAUUUGCCCAUGCAUCCGGCACCAAGGCACAUAACGGAGGAAGAACUUUCUGUGCUGGAAAGUUGUUUACAUCGCUGGAGGACAGAAAUAGAAAAUGACACCAGAGAUUUGCAGGAAAGCAUAUCCAGAAUCCAUCGAACAAUUGAAUUAAUGUACUCUGACAAAUCUAUGAUACAAGUUCCUUAUCGAUUACAUGCCGUUUUAGUUCACGAAGGCCAAGCUAAUGCUGGGCACUACUGGGCAUAUAUUUUUGAUCAUCGUGAAAGCAGAUGGAUGAAGUACAAUGAUAUUGCUGUGACAAAAUCAUCAUGGGAAGAGCUAGUGAGGGACUCUUUUGGUGGUUAUAGAAAUGCCAGUGCAUACUGUUUAAUGUACAUAAAUGAUAAGGCACAGUUCCUAAUACAAGAGGAGUUUAAUAAAGAAACUGGGCAGCCCCUUGUUGGUAUAGAAACAUUACCACCGGAUUUGAGAGAUUUUGUUGAGGAAGACAACCAACGAUUUGAAAAAGAACUAGAAGAAUGGGAUGCACAACUUGCCCAGAAAGCUUUGCAGGAAAAGCUUUUAGCGUCUCAGAAAUUGAGAGAGUCAGAGACUUCUGUGACAACAGCACAAGCAGCAGGAGACCCAGAAUAUCUAGAGCAGCCAUCAAGAAGUGAUUUCUCAAAGCACUUGAAAGAAGAAACUAUUCAAAUAAUUACCAAGGCAUCACAUGAGCAUGAAGAUAAAAGUCCUGAAACAGUUUUGCAGUCGAAACCUGAAAAUACUACAAGCCAACCACUUUCUAAUCAGCGAGUUGUAGAGGUGGCGAUCCCUCAUGUAGGGAAAUUUAUGAUUGAAUCAAAGGAGGGGGGGUAUGAUGACGAGAUCAUGAUGACACCGAACAUGCAAGGUAUUAUCAUGGCGAUAGGUAAAUCCAGGAGUGUAUAUGACAGGUGUGGCCCUGAAGCAGGGUUCUUUAAGCAAGAUGUGAGUGAGUUUACACACAAAUUAUUAGAUUGGUUAGAAGAUGC circ
ENSG00000155313:+:21:15808808:15849872 ENSG00000155313 ENST00000400183 + 21 15808809 15849872 22 GGUUCUUUAAGCAAGAUGUGAG bsj
ENSG00000155313:+:21:15808808:15849872 ENSG00000155313 ENST00000400183 + 21 15808609 15808818 210 AAUGCUUGUUUUUUCAAAUAUCUUAUAUCCUGGUUAAAUUAUAAAAGUUUCUUGCAUUUCGUGUGAAACAUUUCACUUGUUAUCUUUGUAAGGAGUUGGUAAUUAUAUAUUUCAACAACUGGCUCUAGGUUUGAUGUUACAACAUCUAGUAUUUUUUUUUUAGUAGGCUCAAAUAUCAACAGGCUUUUUUCUUUUCACAGCAAGAUGUGA ie_up
ENSG00000155313:+:21:15808808:15849872 ENSG00000155313 ENST00000400183 + 21 15849863 15850072 210 GUUCUUUAAGGUACAAUGAACAUUUUCAUUUUCGUGUCUUUUCUUUUUCAAAAUUAAACUUCUUAAAAUAUUUUAUUUCUUUGAAUUCAGUUUGGUUUUCUGUAUAAUUUCUCUUUUCCUAUCUUAGUUAUGGCCACCGGAUAUCCUAGGGUUUUAUUUUAUGUAUUAAUUAACCUAAUACUGAUUGUUUUUCUCUUAAUCCAGGUAAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 4 411 0.002829655 0.0005970720 2.244649 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
NXF1 2 286 0.001697793 0.0004159215 2.029277 AACCUG AACCUG
CNOT4 2 314 0.001697793 0.0004564992 1.894976 GACAGA GACAGA
HNRNPA1L2 2 314 0.001697793 0.0004564992 1.894976 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 3 453 0.002263724 0.0006579386 1.782673 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
PABPC5 16 2400 0.009620826 0.0034795387 1.467265 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZCRB1 10 1605 0.006225241 0.0023274215 1.419397 AAUUAA,AUUUAA,GAAUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM41 8 1318 0.005093379 0.0019115000 1.413918 AUACAU,UACAUG,UACAUU,UACUUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
YBX2 9 1480 0.005659310 0.0021462711 1.398794 AACAAC,ACAACA,ACAACU,ACAUCA,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
A1CF 10 1642 0.006225241 0.0023810421 1.386536 AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UCAGUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM46 28 4554 0.016411998 0.0066011240 1.313967 AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAUG,AUGAAA,AUGAAG,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBMY1A1 2 489 0.001697793 0.0007101099 1.257546 ACAAGA ACAAGA,CAAGAC
SNRPB2 5 991 0.003395586 0.0014376103 1.239988 UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
TUT1 3 678 0.002263724 0.0009840095 1.201954 AAAUAC,AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ANKHD1 1 339 0.001131862 0.0004927293 1.199831 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
PUM1 33 5823 0.019241653 0.0084401638 1.188890 AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,CAGAAU,CCAGAA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,UAAUGU,UACAUA,UACAUC,UGUACA,UGUAGA,UGUAUA,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM6 5 1054 0.003395586 0.0015289102 1.151157 AAUCCA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SNRNP70 6 1237 0.003961517 0.0017941145 1.142781 AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZNF638 9 1773 0.005659310 0.0025708878 1.138359 GGUUCU,GUUCUU,GUUGGU,GUUGUU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PUM2 9 1890 0.005659310 0.0027404447 1.046216 GUAAAU,GUACAU,GUAGAU,GUAUAU,UACAUA,UACAUC,UGUACA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
FXR2 17 3434 0.010186757 0.0049780156 1.033052 AGACAA,AGACGG,GACAAA,GACAGA,GACAGG,GACGAG,GACGGA,GGACAG,UGACAA,UGACAG,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZFP36 2 126 0.13636364 0.008318051 4.035070 AAGCAA,UAAGCA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SFPQ 1 153 0.09090909 0.010086455 3.172005 AAGCAA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YBX2 5 263 0.014285714 0.0013301088 3.424957 AACAAC,AACAUC,ACAACA,ACAACU,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
U2AF2 12 1071 0.030952381 0.0054010480 2.518739 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
CPEB4 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
DDX19B 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
EIF4A3 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
RALY 11 1117 0.028571429 0.0056328094 2.342647 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ELAVL3 16 1928 0.040476190 0.0097188634 2.058214 AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CPEB2 12 1487 0.030952381 0.0074969770 2.045670 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPC 16 2006 0.040476190 0.0101118501 2.001027 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TIAL1 44 5597 0.107142857 0.0282043531 1.925546 AUUUUA,AUUUUC,AUUUUU,CAGUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAUU,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
TIA1 39 5140 0.095238095 0.0259018541 1.878483 AUUUUC,AUUUUU,CUUUUC,CUUUUU,GUUUUA,GUUUUC,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 UUUUUU AAAAAA,UUUUUU
ELAVL1 23 3309 0.057142857 0.0166767432 1.776736 UAUUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL2 70 9826 0.169047619 0.0495112858 1.771600 AUAUUU,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUUU,GUUUUA,GUUUUC,GUUUUU,UAAUUU,UAGUUA,UAUAUA,UAUAUU,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGUAUU,UUAAUU,UUAGUU,UUAUAU,UUAUGU,UUAUUU,UUCAUU,UUCUUU,UUUAAG,UUUAGU,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPU 7 1136 0.019047619 0.0057285369 1.733372 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AUCAAC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ELAVL4 19 2916 0.047619048 0.0146966949 1.696047 UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 AUAAAA,CAAAAU,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AUAAAA,AUUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PTBP1 51 8003 0.123809524 0.0403264813 1.618323 AUUUUC,AUUUUU,CUAUCU,CUCUUA,CUCUUU,CUUCUU,CUUUUC,CUUUUU,GUCUUU,UAUUUU,UCUCUU,UCUUUU,UUAUUU,UUCUCU,UUCUUG,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PPIE 58 9262 0.140476190 0.0466696896 1.589768 AAAAUA,AAAAUU,AAAUAU,AAAUUA,AAUAUU,AAUUAA,AAUUAU,AUAAAA,AUAAUU,AUAUAU,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUAUAA,UUAUAU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 AUCAAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGUAGG,AGUUGG,UAGUAG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AGGUAA,AGUAGG,AGUUUG,UAGGUU,UAGUAU,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
FUS 7 1711 0.019047619 0.0086255542 1.142922 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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