ENSG00000104714:-:8:668597:674047

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000104714:-:8:668597:674047 ENSG00000104714 ENST00000262109 - 8 668598 674047 954 AUCAGGAUCCUCAUGACCAGCCAAAGAGAAGAAGAAUUAGGAAGCAUAAAUCAAAGAAAAAAUUUAAAAAUCCCAAUAAUGUUCUUAUAGAACAAGCAGAAUUAGAGAAACAGCAGAGUCUGUUACAGGAGAAAUCUCAGCGACAGCACACAGAUGGCACCACAAUAAGCAAAAAUAAAAAAAGGAAACUGAAAAAGAAACAGCAAAUUAAAAGGAAGAAAGCAGCCGGCUUGGCAGCAAAGGCUGCUGGUGUCAGUUUCAUGUACCAGCCCGAGGACAGCAGCAAUGAAGGGGAAGGCGUGGGAGAGGCUUGUGAGGAGGAUGGUGUGGACACCAGCGAGGAAGACCCGACACUGGCCGGGGAGGAAGACGUUAAAGAUACCAGGGAGGAAGAUGGUGCGGACGCUAGCGAGGAAGACCUGACACGGGCCAGGCAGGAAGAGGGUGCGGACGCCAGUGAGGAAGAUCCGACACCGGCCGGGGAGGAAGACGUUAAAGACGCCAGGGAGGAGGACGGUGUGGACACCAUUGAGGAAGACCUGACACGGGCCGGGGAGGAAGACGGUAAAGACACCAGGGAGGAGGACGGUGCGGACGCCAGCGAGGAAGACCCGACAUGGGCUGGGGAGGAAGAGGGUGCAGACUCCGGGGAGGAGGACGGUGCAGACGCCAGCGAGGAAGAUGAUACAAUUACCAAUGAAAAGGCACACAGUAUUCUAAAUUUUUUGAAGUCAACACAGGAAAUGUAUUUUUAUGACGGUGUCUCCAGAGAUGCAGCUUCAGCUGCCCUCGCAGAUGCCGCUGAGGAGCUGCUGGACCGCCUUGCGUCACACAGCAUGCUGCCCUCAGACGUGUCCAUCCUGUACCACAUGAAAACGCUGCUGCUCCUGCAAGAUACUGAGAGAUUGAAGCAUGCUCUGGAAAUGUUCCCAGAACAUUGCACGAUGCCUCCUGAUCAGGAUCCUCAUGACCAGCCAAAGAGAAGAAGAAUUAGGAAGCAUAAA circ
ENSG00000104714:-:8:668597:674047 ENSG00000104714 ENST00000262109 - 8 668598 674047 22 GAUGCCUCCUGAUCAGGAUCCU bsj
ENSG00000104714:-:8:668597:674047 ENSG00000104714 ENST00000262109 - 8 674038 674247 210 AUCUGUGAGUGUAUGUACUGCUAAUUUAUAUUACGUUAGUCCUAGGAUCUUUGAUGGUAAAGUUGAGAAUCACCGAAGUAAAUAGUGUAAACUCUUUUUCUACUAAAACUACAAGAUCCUGAUGGAAAAUUUAUUUAGCCUAAUAUGUUUGUUAUGGUUUCAUUGUACUGAAAAUUGUUAUAUUUGAAUUUUUUUAACAGAUCAGGAUCC ie_up
ENSG00000104714:-:8:668597:674047 ENSG00000104714 ENST00000262109 - 8 668398 668607 210 AUGCCUCCUGGUAAGUACCGUACGAUUUAUUCAAGGUCCUGCUUAAGAUACUCUCAUCGAGGUUUGCCUCUGAAAGACUUACACGCCACCAAAACAGCAAUGAGUUGGAAAAUAUGACACUGCACAUAUGGCAUGGGAGAAUAGAGUCCCAGAGAGAAACAGGCUUCCUGCAUCUCUGCUUGAUAUAAAAAUAUUUCACAUAAUAUAUGC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.002096436 0.0001130379 4.213060 GCAUAA GCAUAA
ANKHD1 5 339 0.006289308 0.0004927293 3.674034 AGACGU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SRSF4 45 3740 0.048218029 0.0054214720 3.152816 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
NONO 12 1498 0.013626834 0.0021723567 2.649118 GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZC3H10 7 1053 0.008385744 0.0015274610 2.456803 CAGCGA,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
MSI1 19 2770 0.020964361 0.0040157442 2.384200 AGGAAG,AGGAGG,UAGGAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF5 57 8869 0.060796646 0.0128544391 2.241725 AACAGC,AAGAAG,AGAAGA,AGGAAG,CACAGA,CACAGC,CGCAGA,GAAGAA,GAGGAA,GGAAGA,UGCAGA,UGCAGC,UGCGGA,UGCGUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
TRA2A 42 6871 0.045073375 0.0099589296 2.178213 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TUT1 3 678 0.004192872 0.0009840095 2.091195 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPF 60 10561 0.063941300 0.0153064921 2.062604 AAGGCG,AAGGGG,AGGAAG,AGGGGA,CUGGGG,GAAGGG,GAGGAA,GGAAGG,GGAGGA,GGAUGG,GGGAAG,GGGAGG,GGGCUG,GGGGAA,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 59 10717 0.062893082 0.0155325680 2.017605 AAGGCG,AAGGGG,AGGAAG,AGGGGA,CUGGGG,GAAGGG,GAGGAA,GGAAGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGAA,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
IGHMBP2 3 813 0.004192872 0.0011796520 1.829577 AAAAAA AAAAAA
FXR1 1 411 0.002096436 0.0005970720 1.811962 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
PABPC4 5 1251 0.006289308 0.0018144033 1.793406 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBFOX1 4 1077 0.005241090 0.0015622419 1.746249 AGCAUG,GCAUGC AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TRA2B 32 7329 0.034591195 0.0106226650 1.703259 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGGAAA,AGGAAG,GAAGAA,GAAUUA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPA0 1 453 0.002096436 0.0006579386 1.671914 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBMX 20 4925 0.022012579 0.0071387787 1.624579 AAGAAG,AAGGAA,AGGAAG,AUCAAA,AUCCCA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ESRP2 8 2150 0.009433962 0.0031172377 1.597596 GGGAAG,GGGGAA,GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPN1 4 1222 0.005241090 0.0017723764 1.564182 AAAAGA,AGAAGA AAAAGA,AGAAGA
HNRNPH3 30 7688 0.032494759 0.0111429292 1.544079 AGGGGA,GAAGGG,GGAAGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGAG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
DAZAP1 23 5964 0.025157233 0.0086445016 1.541119 AAAAAA,AAUUUA,AGGAAA,AGGAAG,AGGAUG,UAGGAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPLL 13 3534 0.014675052 0.0051229360 1.518323 ACACCA,ACCACA,CACACA,CACCAC,CAGACG,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
HNRNPA1 67 18070 0.071278826 0.0261885646 1.444537 AAAAAA,AAAGAG,AAGAGG,AAUUUA,AGGAAG,AGGAGC,AUAGAA,AUUAGA,AUUUAA,CAAAGA,CAGGGA,GAGGAA,GAGGAG,GGAAGG,GGAGGA,GGCAGG,GGUGCG,UAGAGA,UAGGAA,UGGUGC,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
RBM3 7 2152 0.008385744 0.0031201361 1.426330 AAAACG,AAGACG,GAAACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF7 52 14481 0.055555556 0.0209873716 1.404410 AAAGGA,AAGAAG,AAGGCG,AGAAGA,AGAGAA,AGAGAU,AGGAAG,AGGACA,AUAGAA,CAGAGA,CUGAGA,GAAGAA,GAAGGC,GAGAGA,GAGGAA,GAUUGA,GGAAGG,UAGAGA,UCAACA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
HNRNPH2 34 9711 0.036687631 0.0140746688 1.382193 AAGGCG,AAGGGG,AGGGGA,CUGGGG,GAAGGG,GGAAGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGAA,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
LIN28A 14 4315 0.015723270 0.0062547643 1.329874 AGGAGA,GGAGAA,GGAGGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SRSF10 46 13860 0.049266247 0.0200874160 1.294308 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGG,AGAGAA,AGAGGG,CAAAGA,GAGAAA,GAGAAG,GAGAGA,GAGAGG,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPAB 5 1782 0.006289308 0.0025839306 1.283334 AAAGAC,AAGACA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ZCRB1 4 1605 0.005241090 0.0023274215 1.171134 AAUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 4 1634 0.005241090 0.0023694485 1.145316 AAAAAA,UUUUUU AAAAAA,UUUUUU
SART3 7 2634 0.008385744 0.0038186524 1.134875 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF6 65 21880 0.069182390 0.0317100317 1.125466 AAGAAG,AGAAGA,AGGAAG,AUCCUG,CACAGG,CACUGG,CAGCAC,CAUCCU,CCUCAG,CUCUGG,CUUCAG,GAAGAA,GAGGAA,GCAGCA,GGAAGA,UACAGG,UCACAC,UCUCAG,UGCGGA,UGCGUC,UGUGGA,UUACAG AACCUG,AAGAAG,ACCGGG,ACCGUC,ACCUGG,AGAAGA,AGCACC,AGCGGA,AGGAAG,AUCAAC,AUCCUG,AUCGUA,CAACCU,CACACG,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CAUCCU,CCACAC,CCACAG,CCACUC,CCACUG,CCCGGC,CCUCAC,CCUCAG,CCUCUC,CCUCUG,CCUGGC,CGCGUC,CUACAC,CUACAG,CUACUC,CUACUG,CUCACG,CUCAGG,CUCAUC,CUCUCG,CUCUGG,CUUCAC,CUUCAG,CUUCUC,CUUCUG,GAAGAA,GACGUC,GAGGAA,GAUCAA,GCACCU,GCAGCA,GCCGGA,GCCGUC,GCUCAU,GGAAGA,UACACG,UACAGG,UACGUC,UACUCG,UACUGG,UCAACC,UCACAC,UCACAG,UCACUC,UCACUG,UCAUCC,UCCGGA,UCCUGG,UCUCAC,UCUCAG,UCUCUC,UCUCUG,UGCGGA,UGCGGC,UGCGUA,UGCGUC,UGCGUG,UGUGGA,UUACAC,UUACAG,UUACUC,UUACUG,UUCACG,UUCAGG,UUCUCG,UUCUGG,UUUCAC,UUUCAG,UUUCUC,UUUCUG
HNRNPM 2 999 0.003144654 0.0014492040 1.117641 AAGGAA AAGGAA,GAAGGA,GGGGGG
SRSF11 1 688 0.002096436 0.0009985015 1.070102 AAGAAG AAGAAG
CELF4 4 1782 0.005241090 0.0025839306 1.020300 GGUGUG,GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
A1CF 2 3 0.1363636 0.0002619859 9.023754 GAUCAG,UGAUCA AUCAGU,CAGUAU,UAAUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 2 230 0.007142857 0.0011638452 2.617602 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 7 774 0.019047619 0.0039046755 2.286336 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAAACU,AAACUA,AAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 GACUUA,GAUUUA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AAUAUA,AUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,UAAAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AGGUUU,GAGGUU,GGUAAA,GUAAAG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AAUAUU,AAUUGU,ACAUAA,AUUGUA,GUAAAU,UAAAUA,UAAUAU,UGUAAA,UUGUAC AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PPIE 43 9262 0.104761905 0.0466696896 1.166556 AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUU,AAUAUA,AAUAUU,AAUUUA,AAUUUU,AUAAAA,AUAAUA,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUUAU,AUUUUU,UAAAAA,UAAAUA,UAAUAU,UAAUUU,UAUAAA,UAUAUU,UAUUUA,UUAUAU,UUAUUU,UUUAUA,UUUAUU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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