ENSG00000169855:-:3:78938600:78938927

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000169855:-:3:78938600:78938927 ENSG00000169855 ENST00000436010 - 3 78938601 78938927 327 GCUCCCGUCUUCGUCAGGAAGAUUUUCCACCUCGCAUUGUUGAACACCCUUCAGACCUGAUUGUCUCAAAAGGAGAACCUGCAACUUUGAACUGCAAAGCUGAAGGCCGCCCCACACCCACUAUUGAAUGGUACAAAGGGGGAGAGAGAGUGGAGACAGACAAAGAUGACCCUCGCUCACACCGAAUGUUGCUGCCGAGUGGAUCUUUAUUUUUCUUACGUAUAGUACAUGGACGGAAAAGUAGACCUGAUGAAGGAGUCUAUGUCUGUGUAGCAAGGAAUUACCUUGGAGAGGCUGUGAGCCACAAUGCAUCGCUGGAAGUAGCCAGCUCCCGUCUUCGUCAGGAAGAUUUUCCACCUCGCAUUGUUGAACACCCU circ
ENSG00000169855:-:3:78938600:78938927 ENSG00000169855 ENST00000436010 - 3 78938601 78938927 22 GGAAGUAGCCAGCUCCCGUCUU bsj
ENSG00000169855:-:3:78938600:78938927 ENSG00000169855 ENST00000436010 - 3 78938918 78939127 210 CUGAGUGGAGACUCAAAAGGAUUCAAGAAUUGGAAGGUGUAGUCAAGGCGGACACCAGAAAGAUUGUUAGUAAAUAGGGUAGGAAGGCUAGGCCAAUGUUAUGCAGUGUUUAAAUAGUAAUGGUUAAGCCAAUGCUUUAAAAAUAAGCGAUUAACUGUUUUCAAGUGAUAUACGAAGAUAUUUUGUGAAUUCUUCUGCAGGCUCCCGUCU ie_up
ENSG00000169855:-:3:78938600:78938927 ENSG00000169855 ENST00000436010 - 3 78938401 78938610 210 GAAGUAGCCAGUAAGUAAACUGGGCGCUCUGUGUUUGGCAGAGGGAGUGGCAGAGUGGCGUCAUUUGUUUGAUCAUGGCAAUGAAAAGUCGAAUUUGUAUCUCAGGCCUUACCUGAGGAUAAACUCUAGCUUUGUAUGUGAAUACAAUCUACUAUUUCGGUUUUCUGUAUUUCUCAUCCUAACUUGUUAUUCAAGCUAAAUUGGUAUUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 199 0.006116208 0.0002898408 4.399305 CCGCCC CCGCCC
NXF1 1 286 0.006116208 0.0004159215 3.878254 AACCUG AACCUG
CNOT4 1 314 0.006116208 0.0004564992 3.743953 GACAGA GACAGA
RBM28 2 822 0.009174312 0.0011926949 2.943375 AGUAGA,GUGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 5 1782 0.018348624 0.0025839306 2.828033 ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ERI1 1 632 0.006116208 0.0009173461 2.737099 UUCAGA UUCAGA,UUUCAG
HNRNPM 2 999 0.009174312 0.0014492040 2.662339 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
ZFP36L2 2 1277 0.009174312 0.0018520827 2.308451 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
IFIH1 1 904 0.006116208 0.0013115296 2.221387 GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
FXR2 6 3434 0.021406728 0.0049780156 2.104422 AGACAA,AGACAG,GACAAA,GACAGA,GACGGA,GGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
U2AF2 2 1477 0.009174312 0.0021419234 2.098693 UUUUCC,UUUUUC UUUUCC,UUUUUC,UUUUUU
HNRNPA3 3 2140 0.012232416 0.0031027457 1.979092 AAGGAG,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM24 3 2357 0.012232416 0.0034172229 1.839813 AGAGUG,GAGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
EIF4B 1 1179 0.006116208 0.0017100607 1.838590 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RC3H1 2 1786 0.009174312 0.0025897275 1.824800 CCCUUC,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBM41 1 1318 0.006116208 0.0019115000 1.677932 UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 3 2654 0.012232416 0.0038476365 1.668665 GAAUGG,GAAUGU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ELAVL3 3 2867 0.012232416 0.0041563169 1.557332 UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
LIN28A 5 4315 0.018348624 0.0062547643 1.552644 AGGAGA,AGGAGU,GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SRSF10 18 13860 0.058103976 0.0200874160 1.532345 AAAGGA,AAAGGG,AAGGAA,AAGGAG,AAGGGG,ACAAAG,AGACAA,AGAGAG,CAAAGA,GACAAA,GAGAAC,GAGACA,GAGAGA,GAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
NONO 1 1498 0.006116208 0.0021723567 1.493376 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
RALY 1 1553 0.006116208 0.0022520629 1.441390 UUUUUC UUUUUC,UUUUUG,UUUUUU
ENOX1 3 3195 0.012232416 0.0046316558 1.401109 AGACAG,AGUACA,CAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZCRB1 1 1605 0.006116208 0.0023274215 1.393905 GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPLL 3 3534 0.012232416 0.0051229360 1.255667 ACUGCA,CACACC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
CELF2 1 1886 0.006116208 0.0027346479 1.161282 GUCUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PUM2 1 1890 0.006116208 0.0027404447 1.158227 GUACAU GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPD 2 2837 0.009174312 0.0041128408 1.157465 UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBM5 6 6879 0.021406728 0.0099705232 1.102323 AAGGAA,AAGGAG,AAGGGG,CAAGGA,GAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
RBMX 4 4925 0.015290520 0.0071387787 1.098888 AAGGAA,AGGAAG,GAAGGA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SF1 4 4931 0.015290520 0.0071474739 1.097132 ACAGAC,CACCGA,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
HNRNPCL1 1 2062 0.006116208 0.0029897078 1.032633 AUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF2 2 479 0.1363636 0.0314383 2.116864 AGCUCC,CCAGCU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRNP70 5 253 0.014285714 0.0012797259 3.480666 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 AUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,AGGAUU,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUUU,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM24 5 888 0.014285714 0.0044790407 1.673311 AGAGUG,GAGUGG,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGGAAG,AGUAAG,UAGGAA,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AUACGA,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGUAA,AGGAAG,AGUGUU,GGAAGG,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,UAAAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAU,AAUAAG,AGGAAG,GAAAGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SF1 5 1294 0.014285714 0.0065245869 1.130615 AGUAAG,AUUAAC,UACGAA,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAA,AUCAUG,AUGAAA,GAUCAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 ACACCA,ACCAGA,AGAUAU,AGUAGC,CACCAG,CUAACU,CUAGCU,CUAGGC,CUUUAA,GUAGCC,UAAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCUAC,AUUAAC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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