ENSG00000187079:+:11:12764178:12764434

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000187079:+:11:12764178:12764434 ENSG00000187079 ENST00000527636 + 11 12764179 12764434 256 GUUUAUUUUCUUGAAAAGGCUCCAGGCUUCGGCUUGGAAAAUCCCACCGCCAAAAUUGAGCCCAGCAGCUGGAGCGGCAGUGAGAGCCCUGCCGAAAACAUGGAAAGGAUGAGUGACUCUGCAGAUAAGCCAAUUGACAAUGAUGCAGAAGGGGUCUGGAGCCCCGACAUCGAGCAAAGCUUUCAGGAGGCCCUGGCUAUCUAUCCACCAUGUGGGAGGAGGAAAAUCAUCUUAUCAGACGAAGGCAAAAUGUAUGGUUUAUUUUCUUGAAAAGGCUCCAGGCUUCGGCUUGGAAAAUCCCACCGC circ
ENSG00000187079:+:11:12764178:12764434 ENSG00000187079 ENST00000527636 + 11 12764179 12764434 22 CAAAAUGUAUGGUUUAUUUUCU bsj
ENSG00000187079:+:11:12764178:12764434 ENSG00000187079 ENST00000527636 + 11 12763979 12764188 210 CAAGCAAAGCUGGUGACUGAACCAAAAUCACCACUAAAGAACUUAACCGUGUAACCCAAAACCAUGUGUAUCCCCAAAAAGACUGAAAUAAUAAAAUGAAAUGAAAAAAGCUGGUGACUGAAGAACUUGCACUAGAGCUAGCAAGAGCAUUAUGUUUGUGGUUACCACAUCCUUAUACUGUUUUUGGUUUUCUCUUCUAGGUUUAUUUUC ie_up
ENSG00000187079:+:11:12764178:12764434 ENSG00000187079 ENST00000527636 + 11 12764425 12764634 210 AAAAUGUAUGGUAAGUGGCCUGGAACACUCCUUUGAAAUACUACAACCUGCAGUUGUGGUAGGGGAUAGAUUGUAGCUGGUCUUCCAGCAAGAGCUGUUCAUUGUAUGGGGUUGAGUGAUAUUUGUAGAAUUUUAGUGGGUCAUCCAAAGGACUCACCCUAAACUAAAAAGGAGAGUCAAUAAAGGACCUUUGGGAAAAAGAAAAGGACC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 339 0.01171875 0.0004927293 4.571879 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
MATR3 2 739 0.01171875 0.0010724109 3.449889 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ERI1 1 632 0.00781250 0.0009173461 3.090246 UUUCAG UUCAGA,UUUCAG
EIF4B 2 1179 0.01171875 0.0017100607 2.776699 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 2 1234 0.01171875 0.0017897669 2.710975 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ZFP36L2 2 1277 0.01171875 0.0018520827 2.661598 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
IFIH1 1 904 0.00781250 0.0013115296 2.574534 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ZC3H10 1 1053 0.00781250 0.0015274610 2.354649 GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM6 1 1054 0.00781250 0.0015289102 2.353281 UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
G3BP2 2 1644 0.01171875 0.0023839405 2.297399 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ACO1 1 1283 0.00781250 0.0018607779 2.069878 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
ELAVL3 3 2867 0.01562500 0.0041563169 1.910479 UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
YBX2 1 1480 0.00781250 0.0021462711 1.863952 ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NONO 1 1498 0.00781250 0.0021723567 1.846523 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM24 2 2357 0.01171875 0.0034172229 1.777922 GAGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PABPC5 2 2400 0.01171875 0.0034795387 1.751851 GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZCRB1 1 1605 0.00781250 0.0023274215 1.747052 GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
FXR2 3 3434 0.01562500 0.0049780156 1.650214 AGACGA,GACGAA,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPLL 3 3534 0.01562500 0.0051229360 1.608813 AGACGA,CACCGC,CAGACG ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
MSI1 2 2770 0.01171875 0.0040157442 1.545079 AGGAGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPD 2 2837 0.01171875 0.0041128408 1.510612 UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
IGF2BP3 4 4815 0.01953125 0.0069793662 1.484616 AAAACA,AAAAUC,AAAUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
NELFE 2 3028 0.01171875 0.0043896388 1.416645 CUGGCU,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
KHDRBS1 3 4064 0.01562500 0.0058910141 1.407268 CAAAAU,GAAAAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
YBX1 6 7119 0.02734375 0.0103183321 1.406001 ACAUCG,AUCAUC,CCACCA,CCAGCA,CCCUGC,GGUCUG AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
ELAVL4 4 5105 0.01953125 0.0073996354 1.400258 UAUCUA,UAUUUU,UUAUUU,UUUAUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SRSF9 18 20254 0.07421875 0.0293536261 1.338245 AGGAAA,GAAGGC,GAUGCA,GGAAAA,GGAAAG,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGGAGG,UGAAAA,UGACAA,UGAGAG,UGAUGC,UGGAGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
HNRNPA3 1 2140 0.00781250 0.0031027457 1.332239 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 1 2152 0.00781250 0.0031201361 1.324175 AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPH3 6 7688 0.02734375 0.0111429292 1.295083 AUGUGG,GAAGGG,GGAGGA,GGGAGG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
ELAVL1 4 5554 0.01953125 0.0080503280 1.278665 UAUUUU,UGGUUU,UUAUUU,UUUAUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBM46 3 4554 0.01562500 0.0066011240 1.243073 AAUCAU,AAUGAU,AUGAUG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPF 8 10561 0.03515625 0.0153064921 1.199637 AAGGGG,AUGUGG,GAAGGG,GAGGAA,GGAGGA,GGGAGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 8 10717 0.03515625 0.0155325680 1.178485 AAGGGG,AUGUGG,GAAGGG,GAGGAA,GGAGGA,GGGAGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH2 7 9711 0.03125000 0.0140746688 1.150755 AAGGGG,AUGUGG,GAAGGG,GGAGGA,GGGAGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
SART3 1 2634 0.00781250 0.0038186524 1.032721 GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GGUUUA AAUUAA,AUUUAA,GACUUA,GGCUUA
ELAVL1 1 10 0.09090909 0.0007204611 6.979360 UGGUUU UAUUUU,UGGUUU,UUAGUU,UUGGUU,UUUAGU,UUUGGU,UUUGUU
SFPQ 1 153 0.09090909 0.0100864553 3.172005 UGGUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG UGACUG,UGCAUG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA AAAAGA,AGAAGA
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAACUA,AAGACU,AAUACU,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SAMD4A 5 790 0.014285714 0.0039852882 1.841817 CUGGAA,CUGGUC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGGAU,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAA,AAAUAC,AAUAAA,ACCACA,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAA,AUGAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACCACA,CACCAC,CAGCAA,CCAGCA,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AAAGGA,AAGGAC,ACUAGA,CUAGAG,CUCUUC,GAAGAA,GAUAGA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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