ENSG00000183098:+:13:93545262:93545421

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000183098:+:13:93545262:93545421 ENSG00000183098 ENST00000377047 + 13 93545263 93545421 159 GGGAACACUUAAGAAUCUGUCCUCAGGAAUAUACAUGCUGCACCACAGAAAUGGAAGACAAGUUAAGCCAACAAAGCAAACUCGAAUUUGAAAACCUUGUGGAAGAGACAAGCCAUUUUGUGCGCACCACUUUUGUGUCCAGGCAUAAGAAAUUUGACGGGGAACACUUAAGAAUCUGUCCUCAGGAAUAUACAUGCUGCACCACAGAA circ
ENSG00000183098:+:13:93545262:93545421 ENSG00000183098 ENST00000377047 + 13 93545263 93545421 22 GAAAUUUGACGGGGAACACUUA bsj
ENSG00000183098:+:13:93545262:93545421 ENSG00000183098 ENST00000377047 + 13 93545063 93545272 210 AUCGGGUUCAACUUAAGUCAACAUGUUUGGAAUGUUAGAUACACUGAUGUGCUGUGGCCCAGAUAGAGUUCAUGGGGAUGGCUGGAGAAGUAGAUGGAACAAGCACCCUGAGAUUUGAGCAAAGUGUUAGAGAAGUGAAAUCUCUAACGUCUACCAAAAGUCCUUAGAAUGCAAUAGUGACAUUUAACUUCUCAUUGCAGGGGAACACUU ie_up
ENSG00000183098:+:13:93545262:93545421 ENSG00000183098 ENST00000377047 + 13 93545412 93545621 210 AAAUUUGACGGUAGGUGAAAUGGUUUUCACUUCAGUUUGUUAUAGGUGCACUUUUCUAUGAGAAUCUUGGUAUCAUAUGAAAAAUAUUUUUUUAAAAAGGGAGCUUUUCUAUCCCUCUUAAAUAUUUAUAGCAUUGUCUAUUUUUAGAAAAAGCAUGAGUUUUCUUGACAGUAAUUUUUUUUUUUUUAGUAAUAUCUUGGUAAAACCUGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.01257862 0.0001130379 6.798023 GCAUAA GCAUAA
RBMS1 1 497 0.01257862 0.0007217036 4.123423 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM8A 1 611 0.01257862 0.0008869128 3.826037 GUGCGC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
HNRNPAB 4 1782 0.03144654 0.0025839306 3.605262 AAGACA,ACAAAG,AGACAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC3 2 1234 0.01886792 0.0017897669 3.398092 AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM41 2 1318 0.01886792 0.0019115000 3.303159 AUACAU,UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
FXR2 6 3434 0.04402516 0.0049780156 3.144686 AGACAA,GACAAG,GACGGG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
PABPC5 3 2400 0.02515723 0.0034795387 2.854005 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMS3 1 1283 0.01257862 0.0018607779 2.756995 AAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPLL 4 3534 0.03144654 0.0051229360 2.617859 ACCACA,CACCAC,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ENOX1 3 3195 0.02515723 0.0046316558 2.441373 AAGACA,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZCRB1 1 1605 0.01257862 0.0023274215 2.434169 ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF2 1 1886 0.01257862 0.0027346479 2.201546 UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPL 4 5085 0.03144654 0.0073706513 2.093037 AACAAA,ACCACA,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ESRP2 1 2150 0.01257862 0.0031172377 2.012633 GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CPEB2 1 2261 0.01257862 0.0032780993 1.940042 CAUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
CELF1 1 2391 0.01257862 0.0034664959 1.859423 UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SRSF4 2 3740 0.01886792 0.0054214720 1.799179 GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SART3 1 2634 0.01257862 0.0038186524 1.719838 GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TARDBP 1 2654 0.01257862 0.0038476365 1.708929 UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
NOVA2 2 4013 0.01886792 0.0058171047 1.697563 AGGCAU,GAGACA AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
TRA2B 4 7329 0.03144654 0.0106226650 1.565756 AAGAAU,AUAAGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF10 8 13860 0.05660377 0.0200874160 1.494606 AAGAAA,AAGACA,AAGAGA,ACAAAG,AGACAA,AGAGAC,GAGACA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SF1 2 4931 0.01886792 0.0071474739 1.400430 CACAGA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
IGF2BP2 4 8408 0.03144654 0.0121863560 1.367635 AAACUC,GAAAAC,GAACAC,GCAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
YBX1 3 7119 0.02515723 0.0103183321 1.285763 ACCACA,CACCAC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
TIA1 4 9206 0.03144654 0.0133428208 1.236838 AUUUUG,CUUUUG,UUUUGU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 2 5823 0.01886792 0.0084401638 1.160593 GUCCAG,UGUCCA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
KHDRBS1 1 4064 0.01257862 0.0058910141 1.094385 GAAAAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP2 1 14 0.09090909 0.0009824469 6.531901 GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA
FXR2 2 29 0.13636364 0.0019648939 6.116864 GACGGG,UGACGG AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA
HNRNPH2 1 80 0.09090909 0.0053052135 4.098942 GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPF 1 90 0.09090909 0.0059601782 3.930997 GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SRSF1 3 625 0.18181818 0.0410007860 2.148773 CGGGGA,GACGGG,GGGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBM25 1 53 0.004761905 0.0002720677 4.129501 AUCGGG AUCGGG,CGGGCA,UCGGGC
IGF2BP1 3 173 0.009523810 0.0008766626 3.441445 AAGCAC,AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
MATR3 3 216 0.009523810 0.0010933091 3.122837 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
CPEB4 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 UUUUUU AAAAAA,UUUUUU
KHDRBS2 10 1051 0.026190476 0.0053002821 2.304901 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
U2AF2 10 1071 0.026190476 0.0054010480 2.277731 UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 13 1381 0.033333333 0.0069629182 2.259202 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RALY 10 1117 0.026190476 0.0056328094 2.217116 UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPU 10 1136 0.026190476 0.0057285369 2.192804 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 1 230 0.004761905 0.0011638452 2.032640 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPC 16 2006 0.040476190 0.0101118501 2.001027 AUUUUU,UUUUUA,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA1 11 1428 0.028571429 0.0071997179 1.988561 AGCACC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 11 1434 0.028571429 0.0072299476 1.982516 AGCACC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS1 15 1945 0.038095238 0.0098045143 1.958093 AUUUAA,UAAAAA,UAAAAC,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 12 1646 0.030952381 0.0082980653 1.899203 UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ELAVL3 14 1928 0.035714286 0.0097188634 1.877642 AUUUAU,UAUUUA,UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAG AAAAAA,AAAAAG
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
FUS 10 1711 0.026190476 0.0086255542 1.602353 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ELAVL4 17 2916 0.042857143 0.0146966949 1.544044 AUUUAU,UAUUUA,UAUUUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
TIAL1 32 5597 0.078571429 0.0282043531 1.478087 AAAUUU,AAUUUU,AGUUUU,AUUUUU,CAGUUU,CUUUUC,GUUUUC,UAUUUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUUAA,UUUUCA,UUUUUA,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGGAA,GGGGAU,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 AUUUAU,UAUUUA,UAUUUU,UGGUUU,UUUAGU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAGAU,UAAAUA,UAGAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SART3 3 777 0.009523810 0.0039197904 1.280762 AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TIA1 25 5140 0.061904762 0.0259018541 1.256995 AUUUUU,CUUUUC,GUUUUC,UAUUUU,UUUUCU,UUUUUA,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AGUUUG,UAGUAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PPIE 40 9262 0.097619048 0.0466696896 1.064677 AAAAAU,AAAAUA,AAAUAU,AAAUUU,AAUAUU,AAUUUU,AUAUUU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAUA,UAAUAU,UAAUUU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUUAAA,UUUAUA,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCAUA,CUAACG,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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