ENSG00000169519:+:11:28211061:28290397

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000169519:+:11:28211061:28290397 ENSG00000169519 ENST00000406787 + 11 28211062 28290397 329 AUUUUUCUAGAUAUGACAUUUGGUUCGGGAGGGCACACAAAAGCCAUUCUGCAGAAGGAGUCAGAUAUUGUUCUCUAUGCCUUGGACAGAGACCCAACAGCUUAUGCAUUAGCUGAACAUCUUUCAGAGUUGUAUCCUAAACAAAUCCGAGCUAUGCUGGGCCAGUUCAGCCAGGCAGAAGCCUUAUUAAUGAAAGCUGGAGUGCAGCCAGGAACUUUUGAUGGAGUUCUUAUGGAUCUUGGGUGUUCCUCCAUGCAACUUGAUACUCCUGAAAGAGGUUUUUCCCUUCGGAAAGAUGGCCCUUUGGACAUGAGAAUGGAUGGUGGCAGAUUUUUCUAGAUAUGACAUUUGGUUCGGGAGGGCACACAAAAGCCAUUCU circ
ENSG00000169519:+:11:28211061:28290397 ENSG00000169519 ENST00000406787 + 11 28211062 28290397 22 GAUGGUGGCAGAUUUUUCUAGA bsj
ENSG00000169519:+:11:28211061:28290397 ENSG00000169519 ENST00000406787 + 11 28210862 28211071 210 AUCAGUUCUUUUAGACUUAUCACUCAUAAUUGAGCCAGAUCUCACAUGUAACAAAUUCAACUAUAGGCACAACGAUUGUAAUUAUUUUCCUAUUUACUGUCAAGUCUGAAAAUCAUUGUGUGCUUCUAGAAAUUGAGAUAGUUGUCAAGAAUAAGUUUUGUUUAUGCUAAGUUGUAAUUUUCUUUUUCUGUGUUUGCUAGAUUUUUCUAG ie_up
ENSG00000169519:+:11:28211061:28290397 ENSG00000169519 ENST00000406787 + 11 28290388 28290597 210 AUGGUGGCAGGUGAGUAUUCAUAAAGCAUUUCAUCUCACAACAAGAAAUCAAUUUGUCAAAAACACUCUGAAUUUAAUUUUUUUAAGACUACAGAAUUUCCAUUACAUGCCUACACCUAACACUACCAAUACAUAAUAAAUCAGUUUGUUUCAUACUCAUUAUACACAUCAGUAUUUCUCUGGAUUUGGGAUUUUUAAAGAAAAACAAUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 2 453 0.009118541 0.0006579386 3.792778 AGAUAU AAUUUA,AGAUAU,AGUAGG
CNOT4 1 314 0.006079027 0.0004564992 3.735156 GACAGA GACAGA
FXR1 1 411 0.006079027 0.0005970720 3.347864 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
ERI1 2 632 0.009118541 0.0009173461 3.313265 UUCAGA,UUUCAG UUCAGA,UUUCAG
EIF4B 4 1179 0.015197568 0.0017100607 3.151721 CUUGGA,UCGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
MATR3 2 739 0.009118541 0.0010724109 3.087945 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
TUT1 1 678 0.006079027 0.0009840095 2.627096 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
U2AF2 3 1477 0.012158055 0.0021419234 2.504934 UUUUCC,UUUUUC UUUUCC,UUUUUC,UUUUUU
ZNF638 3 1773 0.012158055 0.0025708878 2.241574 GGUUCG,GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IFIH1 1 904 0.006079027 0.0013115296 2.212590 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
YBX2 2 1480 0.009118541 0.0021462711 2.086971 AACAUC,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPM 1 999 0.006079027 0.0014492040 2.068580 GAAGGA AAGGAA,GAAGGA,GGGGGG
RALY 2 1553 0.009118541 0.0022520629 2.017556 UUUUUC UUUUUC,UUUUUG,UUUUUU
RC3H1 2 1786 0.009118541 0.0025897275 1.816003 CCCUUC,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NONO 1 1498 0.006079027 0.0021723567 1.484579 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZRANB2 3 3173 0.012158055 0.0045997733 1.402278 AGGUUU,GAGGUU,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ENOX1 3 3195 0.012158055 0.0046316558 1.392312 GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
G3BP2 1 1644 0.006079027 0.0023839405 1.350492 GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPL 5 5085 0.018237082 0.0073706513 1.307011 AAACAA,AACAAA,ACACAA,CACAAA,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
LIN28A 4 4315 0.015197568 0.0062547643 1.280813 AGGAGU,GGAGGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPC 3 3471 0.012158055 0.0050316361 1.272813 AUUUUU,UUUUUC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TARDBP 2 2654 0.009118541 0.0038476365 1.244831 GAAUGG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF4 1 1782 0.006079027 0.0025839306 1.234273 GGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PUM2 1 1890 0.006079027 0.0027404447 1.149431 UAGAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPD 2 2837 0.009118541 0.0041128408 1.148668 AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SRSF9 19 20254 0.060790274 0.0293536261 1.050302 AGGAAC,AUGAAA,AUGACA,AUGAGA,GAAGCC,GAAGGA,GAUGGA,GAUGGC,GGAAAG,GGACAG,GGAUGG,GGGAGG,GGUGGC,UGAAAG,UGAACA,UGAGAA,UGAUGG,UGGUGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
HNRNPCL1 1 2062 0.006079027 0.0029897078 1.023836 AUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ELAVL2 1 28 0.09090909 0.001899397 5.580811 GAUUUU AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GGCAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
A1CF 9 598 0.023809524 0.0030179363 2.979904 AUAAUU,AUCAGU,CAGUAU,UAAUUA,UAAUUG,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC3 4 310 0.011904762 0.0015669085 2.925546 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
YBX2 3 263 0.009523810 0.0013301088 2.839994 ACAACA,ACAACG,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP3 14 1348 0.035714286 0.0067966546 2.393605 AAAAAC,AAAACA,AAAAUC,AAACAC,AAAUCA,AAAUUC,AAUACA,AAUUCA,ACACUC,CACUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAA,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
QKI 8 904 0.021428571 0.0045596534 2.232540 AAUCAU,ACACUA,ACUCAU,ACUUAU,CUAACA,CUCAUA,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TUT1 1 230 0.004761905 0.0011638452 2.032640 CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACAU,UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
IGF2BP2 16 2163 0.040476190 0.0109028617 1.892367 AAAAAC,AAAACA,AAAAUC,AAACAC,AAAUCA,AAAUUC,AAUACA,AAUUCA,ACACUC,CAAUAC,CACUCA,GAAAUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
HNRNPL 9 1419 0.023809524 0.0071543732 1.734641 AAACAA,AAACAC,AACAAA,AAUAAA,AAUACA,ACAUAA,CACAAC,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,AGACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF1 5 1097 0.014285714 0.0055320435 1.368689 GUUUGU,UGUGUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAC,ACAAAU,AGAAAA,CUAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRSF3 19 3825 0.047619048 0.0192765014 1.304696 AACGAU,ACAUCA,ACGAUU,ACUACA,AUUCAU,CAACGA,CACAAC,CACAUC,CACUAC,CUACAC,CUACAG,UCACAA,UCAUCU,UGUCAA,UUCAAC,UUCAUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AAUUUA,AAUUUG,AAUUUU,AUUAUU,AUUUAA,AUUUAC,AUUUUC,AUUUUU,CUUUUA,CUUUUU,GAUUUU,UAAGUU,UAAUUU,UAUUUA,UAUUUU,UCUUUU,UUAAUU,UUAUAC,UUAUUU,UUCUUU,UUUAAG,UUUAAU,UUUACU,UUUAUG,UUUCAU,UUUCUU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAA,AAUCAU,AUCAAU,AUCAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GACUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AAUUUU,AGUUUU,AUUUUC,AUUUUU,CAGUUU,CUUUUA,CUUUUU,UAUUUU,UCAGUU,UUAUUU,UUUAAA,UUUUAA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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