ENSG00000132155:-:3:12618514:12618747

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000132155:-:3:12618514:12618747 ENSG00000132155 ENST00000686409 - 3 12618515 12618747 233 GUUUAAGAAUUGUUUAAGCUGCAUCAAUGGAGCACAUACAGGGAGCUUGGAAGACGAUCAGCAAUGGUUUUGGAUUCAAAGAUGCCGUGUUUGAUGGCUCCAGCUGCAUCUCUCCUACAAUAGUUCAGCAGUUUGGCUAUCAGCGCCGGGCAUCAGAUGAUGGCAAACUCACAGAUCCUUCUAAGACAAGCAACACUAUCCGUGUUUUCUUGCCGAACAAGCAAAGAACAGUGGUUUAAGAAUUGUUUAAGCUGCAUCAAUGGAGCACAUACAGGGAGCUUGG circ
ENSG00000132155:-:3:12618514:12618747 ENSG00000132155 ENST00000686409 - 3 12618515 12618747 22 AAAGAACAGUGGUUUAAGAAUU bsj
ENSG00000132155:-:3:12618514:12618747 ENSG00000132155 ENST00000686409 - 3 12618738 12618947 210 UUUAACUGCUGGUCCCAUUUUCCUCAUCUAUGAAAUAUUUAAUGGAAGUGUACUAUUAAAGAAACUUUUCUUUGCUGAUGAAUGCAGGAGGUAUCAUUAAAAACCCACAUAGUGCUAUUUUCAUAAUUACUCUUUAUGUAUUGUGUUCUUGGGUUGAAUACUUUUGUUCUAGAGUUACAAUUAUUUGUGUUUCUUACCAGGUUUAAGAAU ie_up
ENSG00000132155:-:3:12618514:12618747 ENSG00000132155 ENST00000686409 - 3 12618315 12618524 210 AAGAACAGUGGUAUGUGAACAUUCUACUUAGGAAAUUUAGCUAUUUAUCUGCCUGUGGAGCACAUUAAGGAUCAUGUUCAACUUAAAGACAGGCAAAAUAUUCAUUGUCAUUUAGGGUCUUUAUUUUUUUUUUUCUAACUGCAGAUUUAUUUUUUUAUAUUGCUGUUCCUUCCACACCCCCUAUUUUUUCCUACCUCUUGGCCUUCCUUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 339 0.012875536 0.0004927293 4.707693 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM25 1 268 0.008583691 0.0003898359 4.460659 CGGGCA AUCGGG,CGGGCA,UCGGGC
CSTF2 5 1967 0.025751073 0.0028520334 3.174570 GUGUUU,GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPAB 4 1782 0.021459227 0.0025839306 3.053959 AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
EIF4B 2 1179 0.012875536 0.0017100607 2.912513 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZCRB1 3 1605 0.017167382 0.0023274215 2.882866 GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 1415 0.012875536 0.0020520728 2.649479 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZC3H10 1 1053 0.008583691 0.0015274610 2.490463 CAGCGC CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
CELF4 2 1782 0.012875536 0.0025839306 2.316993 GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SNRNP70 1 1237 0.008583691 0.0017941145 2.258326 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SSB 1 1260 0.008583691 0.0018274462 2.231769 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 1 1283 0.008583691 0.0018607779 2.205692 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPLL 4 3534 0.021459227 0.0051229360 2.066555 ACAUAC,AGACGA,CAUACA,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBM3 2 2152 0.012875536 0.0031201361 2.044952 AAGACG,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM4 3 3065 0.017167382 0.0044432593 1.949980 CCUUCU,UCCUUC,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ENOX1 3 3195 0.017167382 0.0046316558 1.890070 AAGACA,AUACAG,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
A1CF 1 1642 0.008583691 0.0023810421 1.850005 GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
FXR2 3 3434 0.017167382 0.0049780156 1.786027 AGACAA,AGACGA,GACAAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RC3H1 1 1786 0.008583691 0.0025897275 1.728798 CCUUCU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
IGF2BP3 4 4815 0.021459227 0.0069793662 1.620430 AAACUC,AACUCA,ACAUAC,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
NELFE 2 3028 0.012875536 0.0043896388 1.552458 UCUCUC,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
ELAVL1 4 5554 0.021459227 0.0080503280 1.414479 UGGUUU,UGUUUU,UUGUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBM46 3 4554 0.017167382 0.0066011240 1.378886 AUCAAU,AUGAUG,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF1 1 2391 0.008583691 0.0034664959 1.308120 UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
IGF2BP2 6 8408 0.030042918 0.0121863560 1.301758 AAACUC,AACUCA,ACAUAC,CAACAC,CAUACA,GCAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
TARDBP 1 2654 0.008583691 0.0038476365 1.157626 GUUUUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
QKI 1 2805 0.008583691 0.0040664663 1.077822 ACACUA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM1 3 5823 0.017167382 0.0084401638 1.024327 AAUUGU,AGAAUU,GAAUUG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TRA2B 4 7329 0.021459227 0.0106226650 1.014452 AAAGAA,AAGAAC,AAGAAU,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF5 5 8869 0.025751073 0.0128544391 1.002366 CACAGA,CACAUA,GGAAGA,UGCAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GGUUUA AAUUAA,AUUUAA,GACUUA,GGCUUA
ACO1 1 8 0.09090909 0.0005894682 7.268867 CAGUGG CAGUGA,CAGUGC,CAGUGG
ELAVL1 1 10 0.09090909 0.0007204611 6.979360 UGGUUU UAUUUU,UGGUUU,UUAGUU,UUGGUU,UUUAGU,UUUGGU,UUUGUU
SFPQ 2 153 0.13636364 0.0100864553 3.756968 GUGGUU,UGGUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 AGUGGU AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF2 2 479 0.13636364 0.0314383023 2.116864 AGUGGU,CAGUGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 2 188 0.007142857 0.000952237 2.907109 UAGGGU,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
CPEB4 9 691 0.023809524 0.003486497 2.771688 UUUUUU UUUUUU
DDX19B 9 691 0.023809524 0.003486497 2.771688 UUUUUU UUUUUU
EIF4A3 9 691 0.023809524 0.003486497 2.771688 UUUUUU UUUUUU
U2AF2 13 1071 0.033333333 0.005401048 2.625654 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ZFP36L2 9 774 0.023809524 0.003904676 2.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ELAVL3 22 1928 0.054761905 0.009718863 2.494313 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RALY 11 1117 0.028571429 0.005632809 2.342647 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
SNRPB2 2 288 0.007142857 0.001456066 2.294425 GUAUUG,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM4 10 1094 0.026190476 0.005516929 2.247105 CCUCUU,CCUUCC,CUCUUU,CUUCCU,UCCUUC,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.001566909 2.188580 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
SYNCRIP 9 1041 0.023809524 0.005249899 2.181177 UUUUUU AAAAAA,UUUUUU
KHDRBS2 9 1051 0.023809524 0.005300282 2.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 13 1487 0.033333333 0.007496977 2.152585 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 12 1381 0.030952381 0.006962918 2.152286 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SRP14 1 218 0.004761905 0.001103386 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ZCRB1 5 666 0.014285714 0.003360540 2.087808 ACUUAA,AUUUAA,GAUUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPU 9 1136 0.023809524 0.005728537 2.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPD 12 1488 0.030952381 0.007502015 2.044700 AAUUUA,AUUUAU,UAUUUA,UUAGGA,UUAGGG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
TUT1 1 230 0.004761905 0.001163845 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ELAVL4 24 2916 0.059523810 0.014696695 2.017975 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPAB 2 351 0.007142857 0.001773478 2.009919 AAAGAC,AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NOVA1 11 1428 0.028571429 0.007199718 1.988561 AUUCAU,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPC 15 2006 0.038095238 0.010111850 1.913564 AUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SNRNP70 1 253 0.004761905 0.001279726 1.895704 GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
KHDRBS3 11 1646 0.028571429 0.008298065 1.783726 AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL1 23 3309 0.057142857 0.016676743 1.776736 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS1 13 1945 0.033333333 0.009804514 1.765448 AUUUAA,CAAAAU,UAAAAA,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
AGO1 1 283 0.004761905 0.001430875 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
NOVA2 9 1434 0.023809524 0.007229948 1.719482 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
TIA1 32 5140 0.078571429 0.025901854 1.600949 AUUUUC,AUUUUU,CUUUUC,CUUUUG,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 6 1091 0.016666667 0.005501814 1.598986 AUCAUG,AUCAUU,AUGAAA,AUGAAU,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZNF638 3 646 0.009523810 0.003259774 1.546767 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ACO1 1 325 0.004761905 0.001642483 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
ELAVL2 58 9826 0.140476190 0.049511286 1.504496 AAUUUA,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAG,AUUUAU,AUUUUC,AUUUUU,CAUUUU,GAUUUA,GUAUUG,UACUUU,UAUAUU,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UGUAUU,UUAUAU,UUAUGU,UUAUUU,UUCAUU,UUCUUU,UUUAAG,UUUAAU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PCBP2 24 4164 0.059523810 0.020984482 1.504144 AAUUAC,ACAUUA,AUUAAA,CAAUUA,CAUUAA,CCCCCU,CCUUCC,CUUAAA,CUUCCA,CUUCCU,UUAGGA,UUAGGG,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
CELF5 3 669 0.009523810 0.003375655 1.496371 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM41 2 502 0.007142857 0.002534260 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.002549375 1.486358 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
FUS 9 1711 0.023809524 0.008625554 1.464850 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
TIAL1 31 5597 0.076190476 0.028204353 1.433693 AAAUUU,AUUUUC,AUUUUU,CUUUUC,CUUUUG,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF2 4 881 0.011904762 0.004443773 1.421682 GUAUGU,UAUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PTBP1 44 8003 0.107142857 0.040326481 1.409736 ACUUUU,AUUUUC,AUUUUU,CCUCUU,CCUUCC,CUCUUG,CUCUUU,CUUCCU,CUUUUC,GUCUUU,UACUUU,UAUUUU,UUAUUU,UUCCUU,UUCUUG,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
RBM3 2 541 0.007142857 0.002730754 1.387202 AAUACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PPIE 49 9262 0.119047619 0.046669690 1.350981 AAAAUA,AAAUAU,AAAUUU,AAUAUU,AAUUAU,AAUUUA,AUAAUU,AUAUUU,AUUAAA,AUUAUU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAUUA,UAUAUU,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAUAU,UUAUUU,UUUAAU,UUUAUA,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
CELF4 3 776 0.009523810 0.003914752 1.282618 GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PCBP1 24 4891 0.059523810 0.024647320 1.272036 AAUUAC,ACAUUA,AUUAAA,CAAUUA,CAUUAA,CCUACC,CCUCUU,CCUUCC,CUUAAA,CUUACC,UUAGGA,UUAGGG,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
KHSRP 28 5764 0.069047619 0.029045748 1.249265 AUAUUU,AUGUAU,AUUAUU,AUUUAU,CCCCCU,CCUUCC,CUGCCU,GCCUUC,GUAUGU,UAUAUU,UAUUUA,UAUUUU,UCCUUC,UUAUUU,UUGUGU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
A1CF 2 598 0.007142857 0.003017936 1.242939 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CELF1 4 1097 0.011904762 0.005532044 1.105654 UGUGUU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
DAZAP1 12 2878 0.030952381 0.014505240 1.093476 AAUUUA,AGGAAA,UAGGAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPK 13 3244 0.033333333 0.016349254 1.027741 ACCCCC,CCCCCU,CCCCUA,UCCCAU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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