ENSG00000155561:+:7:135577795:135593192

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000155561:+:7:135577795:135593192 ENSG00000155561 MSTRG.30755.2 + 7 135577796 135593192 1193 GUUUCUGAUCUCAUUAAGGAGUGCAGGCAGUCUCUUGCAGAAAGCCUUUUUGCCUGGGCUUGCCAGUCACCUUUAGGCAAAGAAGACACUCUCCUCCUCAUUGGACAUUUGGAAAGAGUGACAGUUGAGGCUAAUGGCUCACUGGAUGCAGUGAAUCUGGCUCUUCUUAUGGCGCUUCUAUACUGUUUUGAUAUCAGUUUUAUAGAGCAAAGCACAGAGGAACGAGAUGAUAUGAUUCAUCAACUUCCACUGUUGACAGAAAAACAGUACAUUGCAACAAUUCACUCUCGUCUUCAGGACUCACAGCUUUGGAAACUGCCUGGGCUCCAAGCCACUGUUAGACUUGCCUGGGCGCUGGCAUUGAGGGGAAUAUCCCAGCUACCUGAUGUGACAGGUGAAUUGAUUCUCUGGCAGAAUUCACAGAGGCAGAUGAAGCAAUGGCAGAACUCGCAAUUGCUGACAACGUUUUCCUGUUCCUCAUGGAAUCUGUAGUGGUAUCAGAAUACUUUUAUCAGGAAGAAUUUUAUAUUCGCAGAGUCCAUAAUCUCAUCACAGAUUUCCUUGCACUUAUGCCAAUGAAGGUGAAACAGCUGAGGAAUCGGGCAGAUGAAGAUGCUCGAAUGAUUCACAUGAGUAUGCAGAUGGGUAAUGAACCCCCCAUUUCACUUAGAAGGGACCUGGAACACUUAAUGCUUUUGAUUGGCGAGCUAUAUAAAAAGAACCCUUUUCAUCUGGAGCUUGCUCUAGAAUAUUGGUGUCCCACAGAGCCUCUUCAGACUCCGACUAUCAUGGGCUCUUAUCUAGGGGUGGCUCAUCAGCGGCCCCCUCAACGCCAGGUUGUCUUGUCAAAGUUUGUUAGGCAAAUGGGUGACCUGUUGCCUCCAACUAUUUAUAUUCCUUAUUUGAAGAUGCUCCAGGGAUUGGCCAAUGGGCCUCAGUGUGCCCACUACUGUUUCAGCCUGCUCAAAGUCAAUGGUAGUAGUCAUGUUGAAAAUAUUCAGGGAGCAGGUGGCAGUCCUGUUUCCUGGGAACAUUUCUUUCACUCCUUGAUGCUUUACCACGAACACCUUCGGAAGGAUCUUCCAAGUGCAGAUAGUGUCCAGUACCGUCACCUUCCUUCCCGUGGCAUCACCCAGAAGGAGCAAGAUGGAUUGAUUGCUUUUUUGCAGCUCACGUCUACCAUCAUUACUUGGGUUUCUGAUCUCAUUAAGGAGUGCAGGCAGUCUCUUGCAGAAAGCCUUUU circ
ENSG00000155561:+:7:135577795:135593192 ENSG00000155561 MSTRG.30755.2 + 7 135577796 135593192 22 UCAUUACUUGGGUUUCUGAUCU bsj
ENSG00000155561:+:7:135577795:135593192 ENSG00000155561 MSTRG.30755.2 + 7 135577596 135577805 210 UCAUCCCAAUUUCUUAAGGAACUUAAGGAUAAGGAAUAAACAAUAGGGUUUGUUCAGAAUUCCAGAGGUGACGUCUUAGGAUCACUUGUGGAUUUUGAUAGGUUUUUUUAUUAGCCUUUGUAAAAGGUAGUUUGUACUUUGGAAUAAGACCAGGCUUCACUGUAAUUUAUUUAUACUGAUAGUCAUGUUUUUAUUUCUAGGUUUCUGAUC ie_up
ENSG00000155561:+:7:135577795:135593192 ENSG00000155561 MSTRG.30755.2 + 7 135593183 135593392 210 CAUUACUUGGGUAGGUAACUCAUCCCCAGCAUAAUUUUAUUUUUAUUAUAGCACAGUAGCAUUUUAAGAGCCCCAAACAUUUUCUUUUAAUUUAAGAGUAAUAAACUUAGCCUAUCUAGAUAGACAGAUAUAUAGCAUUCUGCCCUUAAGUUUUUUGUUUUUUGACCUCUACAGGGUGUAAGUUAUGGUAGCCCUGCUCAUUGGCAUAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 3 268 0.003352892 0.0003898359 3.104467 AUCGGG,CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
ESRP1 1 156 0.001676446 0.0002275250 2.881309 AGGGAU AGGGAU
CNOT4 1 314 0.001676446 0.0004564992 1.876722 GACAGA GACAGA
AGO1 2 548 0.002514669 0.0007956130 1.660230 GGUAGU,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 4 991 0.004191115 0.0014376103 1.543661 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ERI1 2 632 0.002514669 0.0009173461 1.454830 UUCAGA,UUUCAG UUCAGA,UUUCAG
AKAP1 1 426 0.001676446 0.0006188101 1.437837 UAUAUA AUAUAU,UAUAUA
RBM41 5 1318 0.005029338 0.0019115000 1.395663 AUACUU,UACAUU,UACUUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
EIF4B 4 1179 0.004191115 0.0017100607 1.293287 UCGGAA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBMS1 1 497 0.001676446 0.0007217036 1.215928 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SSB 4 1260 0.004191115 0.0018274462 1.197505 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 2 822 0.002514669 0.0011926949 1.076143 AGUAGU,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPH3 1 61 0.09090909 0.004060781 4.484596 UUGGGU AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 2 35 0.007142857 0.0001813785 5.299426 GCAUAA GCAUAA
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 AUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ZFP36L2 11 774 0.028571429 0.0039046755 2.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPD 15 1488 0.038095238 0.0075020153 2.344261 AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AUAUAG,AUAUAU,UAUAGC,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ELAVL3 18 1928 0.045238095 0.0097188634 2.218679 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL4 26 2916 0.064285714 0.0146966949 2.129006 AUUUAU,UAUCUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AAUAAA,AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM41 3 502 0.009523810 0.0025342604 1.909974 UACUUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL1 24 3309 0.059523810 0.0166767432 1.835629 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
HNRNPA2B1 13 2033 0.033333333 0.0102478839 1.701640 AAGGAA,AAUUUA,AGAUAU,AGGAAC,AUAGCA,AUAGGG,AUUUAA,UAGACA,UAGGGU,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ELAVL2 66 9826 0.159523810 0.0495112858 1.687942 AAUUUA,AAUUUU,AUUUAA,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUUA,GAUUUU,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAUACU,UAUAUA,UAUUAU,UAUUUA,UAUUUU,UCUUUU,UUAAGU,UUAAUU,UUACUU,UUAUAC,UUAUUU,UUCUUU,UUUAAG,UUUAAU,UUUAUA,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 36 5597 0.088095238 0.0282043531 1.643146 AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUA,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 32 5140 0.078571429 0.0259018541 1.600949 AUUUUC,AUUUUG,AUUUUU,CUUUUA,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUA,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
DAZAP1 16 2878 0.040476190 0.0145052398 1.480499 AAUUUA,AGAUAU,AGGAUA,AGGUAA,AGGUAG,AGUUUG,UAGGAU,UAGGUA,UAGGUU,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPCL1 7 1381 0.019047619 0.0069629182 1.451847 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 AGUCAU,CUAGAU,GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AAUAAA,AUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PPIE 48 9262 0.116666667 0.0466696896 1.321835 AAUAAA,AAUUUA,AAUUUU,AUAAUU,AUAUAU,AUUAUA,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAUAA,UAAUUU,UAUAUA,UAUUAU,UAUUUA,UAUUUU,UUAAUU,UUAUUA,UUAUUU,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 UAGAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
HNRNPA1 29 6340 0.071428571 0.0319478033 1.160785 AAUUUA,AGAUAU,AGGGUU,AUAGCA,AUAGGG,AUUUAA,AUUUAU,GUAAGU,GUAGGU,UAGACA,UAGGAU,UAGGGU,UAGGUA,UUAUUU,UUUAUA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUUU UUUUCC,UUUUUC,UUUUUU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AGAAUU,CAGAAU,GUAAUA,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UUGUAC,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AAGGAA,AUCCCA,AUCCCC,UAAGAC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAA,AGGUAG,AGGUUU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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