ENSG00000285733:-:6:169582835:169689012

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000285733:-:6:169582835:169689012 ENSG00000285733 MSTRG.29337.6 - 6 169582836 169689012 1643 AUUGAAGAUGGAAAAUCCCCAAGACAUUUUCUCAAGUAAUGGUGGCUGUCUAAGUGAUAUAGUUAUAGAAAAAUACCUGGUUGAAUCCAAGGAGUCUGUGUCUCAUGUUCAGCUUGCUUGCAGCAUGCAGGACUGUGCUUUCCCUUUGGAUGGAACUGAACUUUGUAUAUGGAACACUAAGGAUCCUUCUCAUCAGCUUCUAAUCCUACGAGGACACCAUCAGCCAAUUACUGCUAUGGCUUUUGGAAAUAAAGUGAACCCACUUCUAAUCUGCUCAGCAUCACUGGAUUAUGUUAUAAUGUGGAACCUGGAUGAAUGUAGAGAGAAAGUACUUCAAGGGCUGGUCCCUCGAGGGACUGUCAUGGGCUCGCUUUUGGGAAAGGUGCUGUGUUUACAGUUGAGCCUGGAUGAUCAUGUUGUUGCCGUGUGUGCUGGAAACAAAAUAUUCAUGCUGGAUAUUGAGGUCUGGGACCAUUGUACAGGAUCAUUAAUAUACAGUUCAUCUGUGUUAUCAGCUUUGGAUCUUCAGUUUGAUGGAUGGACACCAUUAUCGUCGUGUGGCACGGGUUGACCUAAGGAAGAAGACAGAGACUUUCUCCACAAGAAGGGUUAAGUCUGGGCUGUGCAGCCAGCCAGAUGCCACAUGCACCCACCCAGCAACCUUGUCCUCACCUGGUCUCUGGCUGUCCAGAGUUGCUUCCUGUUGACGACAGCUCUCCUCAGAAGAAAGCCAGCUUCCCUCUACAAGUGCUCUGGGAAAAGGAGAGCAGGUUGAAGUAACAUUUCCUGUACUGAGACUUGCACCCUGUGAUCUCUCACUCAUCCCAAAUUCUGCAUGUGGAUGUCUUUCUUCUGAGAACACCCGAUGUGUGUGGAUCGGAAGCUCAGUGGGCUUAUUCGUAUUUAACCUGGCAAACCUGGAAGUGGAAGCUGCUUUGUAUUACAAGGAUUUCCAGAGCCUCAGCAUCCUGCUGGCCGGAUCGUGUGCCCUGAGGAACCGCACUGCGGAUCAAAAGGUGCUGUGCUUGCUGGCCUCCCUCUUUGGCGGGAAGAUUGCCGUGUUGGAGAUCAACCCGGCCGCGCUAGUCAGGGCUCAGCAGUGCCCCAGCAUGGGGCAGAGCCUCUCGGUGCCAGCCAGCUCCUGUGUCCUACCGACCUCUCCACUGUAUCUGGGAAUUGCCAAGGAGAAGAGUACCAAGGCUGCUAGUGAACAGCGACGUGAUAUAAACAGAAGAGCAAGUCCAAGCUGAUUUGCAGGCUCUCCACGACGGGUGCAGUAGACAUGACCAGUUUAUCGGCAGUCAACGACUUUUAUUCCCACAUCGUACUCGCAGCUGGCCGGAACAGGACCGUGGAAGUGUUUGACCUCAACGCCGGCUGCAGUGCAGCGGUGAUAGCGGAAGCCCACUCACGGCCUGUCCAUCAAAUCUGCCAAAAUAAAGUGUGAGCGCCACUUUGAAGGGCAUCCAACCCGCGGCUAUCCAUGUGGAAUCGCUUUCAGUCCUUGUGGACGAUUCGCGGCUUGUGGGGCCGAGGACAGACACGCUUACGUGUAUGAAAUGGGCUCAAGCACGUUUUCUCACCGGCUGGCUGGGCACACAGACACUGUCACUGGAGUGGCCUUCAACCCAUCAGCGCCCCAGAUUGAAGAUGGAAAAUCCCCAAGACAUUUUCUCAAGUAAUGGUGGCUGUC circ
ENSG00000285733:-:6:169582835:169689012 ENSG00000285733 MSTRG.29337.6 - 6 169582836 169689012 22 CAGCGCCCCAGAUUGAAGAUGG bsj
ENSG00000285733:-:6:169582835:169689012 ENSG00000285733 MSTRG.29337.6 - 6 169689003 169689212 210 AAUGGAGCAGUUGAGAAUGUGGAAGCUCCAGAGUUUUCGGCAAUUUCUCUUCUUUUUUCUUGGGAUGAGGAGAGGUGAAUAAAUAGGUAUGAUGUGGUAUAUGUGUGUGGUCAAACUAGUAACUAUCAGUAGGUAAUAGACUUUUUUUCUGUAUUAAAUAUGAUACCUAUAGUCAUCUUAUAUGUACUUUUUGUUUUCAGAUUGAAGAUG ie_up
ENSG00000285733:-:6:169582835:169689012 ENSG00000285733 MSTRG.29337.6 - 6 169582636 169582845 210 AGCGCCCCAGGUACAGUCUUGCUGAGUGGGUGGGGCGCCUCUGCUGCAUACAAGUCUUACAUUAUAUUUUUGUAUCUUUAUGACUUUAUUUUGGUGAAAUCUUAUAAUACUUAAGGUUACAUGCCAGUGUUCACUGAGUGCAAGGAGAACUUAGGAAAUAUAUUUUUAUUGGCGAGAGAGAGAGAAAUAAACCUUUAUUGUGGAGAAAUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 3 286 0.002434571 0.0004159215 2.549284 AACCUG AACCUG
RBMS1 4 497 0.003043214 0.0007217036 2.076117 AUAUAC,AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CNOT4 2 314 0.001825928 0.0004564992 1.999946 GACAGA GACAGA
CELF5 12 1415 0.007912355 0.0020520728 1.947025 GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 12 1782 0.007912355 0.0025839306 1.614540 GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
FXR1 2 411 0.001825928 0.0005970720 1.612653 ACGACA,ACGACG ACGACA,ACGACG,AUGACA,AUGACG
IFIH1 5 904 0.003651856 0.0013115296 1.477380 CCGCGG,GCCGCG,GCGGAU,GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM14 2 478 0.001825928 0.0006941687 1.395272 CGCGGC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBMY1A1 2 489 0.001825928 0.0007101099 1.362516 ACAAGA,CAAGAC ACAAGA,CAAGAC
CSTF2 11 1967 0.007303713 0.0028520334 1.356639 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
IGF2BP1 4 831 0.003043214 0.0012057377 1.335680 AAGCAC,CACCCG,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ANKHD1 1 339 0.001217285 0.0004927293 1.304800 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
CELF2 10 1886 0.006695070 0.0027346479 1.291744 AUGUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM6 5 1054 0.003651856 0.0015289102 1.256126 AAUCCA,AUCCAA,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBFOX1 5 1077 0.003651856 0.0015622419 1.225012 AGCAUG,GCAUGC,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA3 10 2140 0.006695070 0.0031027457 1.109554 AAGGAG,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
SNRPB2 4 991 0.003043214 0.0014376103 1.081923 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF1 11 2391 0.007303713 0.0034664959 1.075152 CUGUCU,GUGUGU,GUGUUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
AGO2 8 1830 0.005477785 0.0026534924 1.045700 AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM42 1 407 0.001217285 0.0005912752 1.041766 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF7 1 128 0.09090909 0.008449044 3.427565 GAUUGA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF2 2 479 0.13636364 0.031438302 2.116864 CCAGAU,GAUUGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PPRC1 2 127 0.007142857 0.0006449012 3.469351 GGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
MATR3 4 216 0.011904762 0.0010933091 3.444765 AAUCUU,AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM41 6 502 0.016666667 0.0025342604 2.717329 AUACUU,UACAUG,UACAUU,UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
RBM24 7 888 0.019047619 0.0044790407 2.088349 GAGUGG,GUGUGG,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AAGGAG,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPC 14 2006 0.035714286 0.0101118501 1.820454 AUUUUU,CUUUUU,GCAUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAU,CUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CELF2 5 881 0.014285714 0.0044437727 1.684716 AUGUGU,GUGUGU,UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAAUAA,AAUAAA,AUAAAC,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
LIN28A 5 900 0.014285714 0.0045395002 1.653968 AGGAGA,GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
KHDRBS2 6 1051 0.016666667 0.0053002821 1.652825 AAUAAA,AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGUAGG,UAGGAA,UAGGUA,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
TIA1 30 5140 0.073809524 0.0259018541 1.510752 AUUUUG,AUUUUU,CUUUUU,GUUUUC,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CELF6 6 1196 0.016666667 0.0060308343 1.466536 GUGGGG,GUGUGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 GUAUCU,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGU,GUGAAU,GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAACUA,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
SF1 6 1294 0.016666667 0.0065245869 1.353007 ACAGUC,AGUAAC,CACUGA,UAGUAA,UGCUGA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAUAU,UAAAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
TIAL1 28 5597 0.069047619 0.0282043531 1.291674 AGUUUU,AUUUUG,AUUUUU,CUUUUU,GUUUUC,UAUUUU,UUAAAU,UUAUUU,UUUAUU,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
SNRPA 9 1947 0.023809524 0.0098145909 1.278539 AGCAGU,AGGAGA,AGUAGG,AUACCU,CAGUAG,GAGCAG,GAUACC,GGUAUG ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
SRSF10 14 2937 0.035714286 0.0148024990 1.270661 AAGGAG,AGAGAA,AGAGAG,GAGAAA,GAGAAC,GAGAGA,GAGAGG,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GAGUGC,GCAUAC,UAAUAC,UGAUAC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AGUAGG,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AUACUU,AUAUUU,AUUUUG,AUUUUU,CUUAUA,CUUUUU,GUUUUC,UACUUU,UAUAUU,UAUUGU,UAUUUU,UCUUAU,UCUUUU,UGUAUU,UUAUAU,UUAUUG,UUAUUU,UUCUUU,UUGUAU,UUUAUG,UUUAUU,UUUCUU,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AGAGAA,AGAGAG,AUAGAC,CGAGAG,CUCUUC,GAGAGA,GAUUGA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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