ENSG00000109674:+:4:177322458:177353728

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000109674:+:4:177322458:177353728 ENSG00000109674 ENST00000264596 + 4 177322459 177353728 1304 GCUGCUGCACUGAAUAAUGAUUCCAGCCAGAAUGUCUUGAGCCUGUUUAAUGGAUAUGUUUACAGUGGCGUGGAAACUUUGGGGAAGGAGCUCUUUAUGUACUUUGGACCAAAAGCUUUACGGAUUCAUUUCGGAAUGAAAGGCUUCAUCAUGAUUAAUCCACUUGAGUAUAAAUAUAAAAAUGGAGCUUCUCCUGUUUUGGAAGUGCAGCUCACCAAAGAUUUGAUUUGUUUCUUUGACUCAUCAGUAGAACUCAGAAACUCAAUGGAAAGCCAACAGAGAAUAAGAAUGAUGAAAGAAUUAGAUGUAUGUUCACCUGAAUUUAGUUUCUUGAGAGCAGAAAGUGAAGUUAAAAAACAGAAAGGCCGGAUGCUAGGUGAUGUGCUAAUGGAUCAGAACGUAUUGCCUGGAGUAGGGAACAUCAUCAAAAAUGAAGCUCUCUUUGACAGUGGUCUCCACCCAGCUGUUAAAGUUUGUCAAUUAACAGAUGAACAGAUCCAUCACCUCAUGAAAAUGAUACGUGAUUUCAGCAUUCUCUUUUACAGGUGCCGUAAAGCAGGACUUGCUCUCUCUAAACACUAUAAGGUUUACAAGCGUCCUAAUUGUGGUCAGUGCCACUGCAGAAUAACUGUGUGCCGCUUUGGGGACAAUAACAGAAUGACAUAUUUCUGUCCUCACUGUCAAAAAGAAAAUCCUCAACAUGUUGACAUAUGCAAGCUACCGACUAGAAAUACUAUAAUCAGUUGGACAUCUAGCAGGGUGGAUCAUGUUAUGGACUCCGUGGCUCGGAAGUCGGAAGAGCACUGGACCUGUGUGGUGUGUACUUUAAUCAAUAAGCCCUCUUCUAAGGCAUGUGAUGCUUGCUUGACCUCAAGGCCUAUUGAUUCAGUGCUCAAGAGUGAAGAAAAUUCUACUGUCUUUAGCCACUUAAUGAAGUACCCGUGUAAUACUUUUGGAAAACCUCAUACAGAAGUCAAGAUCAACAGAAAAACUGCAUUUGGAACUACAACUCUUGUCUUGACUGAUUUUAGCAAUAAAUCCAGUACUUUGGAAAGAAAAACAAAGCAAAACCAGAUACUAGAUGAGGAGUUUCAAAACUCUCCUCCUGCUAGUGUUUGUUUGAAUGAUAUACAGCACCCCUCCAAGAAGACAACAAACGAUAUAACUCAACCAUCCAGCAAAGUAAACAUAUCACCUACAAUCAGUUCAGAAUCUAAAUUAUUUAGUCCAGCACAUAAAAAACCGAAAACAGCCCAAUACUCAUCACCAGAGCUUAAAAGCUGCAACCCUGGAUAUUCUAACAGGCUGCUGCACUGAAUAAUGAUUCCAGCCAGAAUGUCUUGAGCCUGUUUAA circ
ENSG00000109674:+:4:177322458:177353728 ENSG00000109674 ENST00000264596 + 4 177322459 177353728 22 UAUUCUAACAGGCUGCUGCACU bsj
ENSG00000109674:+:4:177322458:177353728 ENSG00000109674 ENST00000264596 + 4 177322259 177322468 210 CUCUCUUUAAAUGACUGCAUAGUGAUUUGACAAAAUGUAUGUAAACAGCCGAUUACAUUACAUGACUUGUUGGAGAUUAUUCUUCUCAUUGGAAUGCACCUGGGCGUGAAGUAAUAUAAACACAUUUAAGAAUUAAAUAAUGCUUUUGCUUAGAGUUUGUGUGUGUGUGUGCUUAUGUGUGUACAUGUAUUUUCCACUAGGCUGCUGCAC ie_up
ENSG00000109674:+:4:177322458:177353728 ENSG00000109674 ENST00000264596 + 4 177353719 177353928 210 AUUCUAACAGGUAUGAUGCUUUUAACCUUGGUCUUUAAGAUAAUUGCUUUUUUUUUUUUUUUUUUAAGACGAGGUCUCACUCUGUCACCUAGGCUACAGUGCAGUGGUGUGAUCUCAGCUCACUGCAACCUCUGCCUCCCGCGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGAGAUUACAGGCACAUGCCAUCAGGCCCGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 3 267 0.003067485 0.0003883867 2.981491 CUCUCU CUCUCU
TUT1 7 678 0.006134969 0.0009840095 2.640312 AAAUAC,AAUACU,AGAUAC,CAAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
EIF4B 12 1179 0.009969325 0.0017100607 2.543448 CUCGGA,GUCGGA,GUUGGA,UCGGAA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 12 1234 0.009969325 0.0017897669 2.477724 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA1L2 2 314 0.002300613 0.0004564992 2.333334 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBMS1 3 497 0.003067485 0.0007217036 2.087578 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPA0 2 453 0.002300613 0.0006579386 1.805994 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
RBM3 12 2152 0.009969325 0.0031201361 1.675887 AAAACU,AAACGA,AAUACU,AUACUA,GAAACU,GAUACG,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM46 26 4554 0.020705521 0.0066011240 1.649232 AAUCAA,AAUGAA,AAUGAU,AUCAAA,AUCAAU,AUCAUG,AUGAAA,AUGAAG,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SART3 14 2634 0.011503067 0.0038186524 1.590883 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM6 5 1054 0.004601227 0.0015289102 1.589515 AAUCCA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PABPC5 11 2400 0.009202454 0.0034795387 1.403123 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZCRB1 7 1605 0.006134969 0.0023274215 1.398324 AAUUAA,ACUUAA,GAAUUA,GAUUAA,GCUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM42 1 407 0.001533742 0.0005912752 1.375154 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
A1CF 7 1642 0.006134969 0.0023810421 1.365463 AGUAUA,AUCAGU,GAUCAG,UAAUUG,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM28 3 822 0.003067485 0.0011926949 1.362831 AGUAGA,AGUAGG,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
FXR1 1 411 0.001533742 0.0005970720 1.361079 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 3 831 0.003067485 0.0012057377 1.347140 ACCCGU,AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ERI1 2 632 0.002300613 0.0009173461 1.326481 UUCAGA,UUUCAG UUCAGA,UUUCAG
CSTF2 8 1967 0.006901840 0.0028520334 1.274990 GUGUGU,GUGUUU,GUUUUG,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM41 5 1318 0.004601227 0.0019115000 1.267313 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 11 2654 0.009202454 0.0038476365 1.258046 GAAUGA,GAAUGU,GUGUGU,GUUUUG,UGAAUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBFOX2 1 452 0.001533742 0.0006564894 1.224213 UGACUG UGACUG,UGCAUG
IGF2BP3 20 4815 0.016104294 0.0069793662 1.206278 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUUC,AACUCA,ACAAAC,ACAAUC,CAAUCA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
QKI 11 2805 0.009202454 0.0040664663 1.178243 ACACUA,ACUCAU,AUCUAA,AUUAAC,CUAACA,CUCAUA,UAAUCA,UACUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF5 5 1415 0.004601227 0.0020520728 1.164937 GUGUGG,GUGUGU,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
YBX2 5 1480 0.004601227 0.0021462711 1.100186 AACAUC,ACAACA,ACAACU,ACAUCA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SSB 4 1260 0.003834356 0.0018274462 1.069155 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CELF4 6 1782 0.005368098 0.0025839306 1.054844 GGUGUG,GUGUGG,GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ACO1 4 1283 0.003834356 0.0018607779 1.043078 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
PABPC1 16 4443 0.013036810 0.0064402624 1.017400 AAAAAA,AAAAAC,ACAAAC,AGAAAA,CUAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AGO2 6 1830 0.005368098 0.0026534924 1.016519 AAAAAA,AAAGUG,AAGUGC,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YTHDC1 1 20 0.09090909 0.001375426 6.046474 GGCUGC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC
G3BP1 1 69 0.09090909 0.004584752 4.309509 ACAGGC ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
SRSF2 2 479 0.13636364 0.031438302 2.116864 AGGCUG,GGCUGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 56 0.004761905 0.0002871826 4.051499 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
CPEB4 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
DDX19B 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
EIF4A3 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
CELF2 15 881 0.038095238 0.0044437727 3.099754 AUGUGU,GUAUGU,GUGUGU,UAUGUG,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 11 669 0.028571429 0.0033756550 3.081334 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 12 776 0.030952381 0.0039147521 2.983058 GGUGUG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
RBM24 12 888 0.030952381 0.0044790407 2.788789 GUGUGA,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
KHDRBS2 14 1051 0.035714286 0.0053002821 2.752360 AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 14 1071 0.035714286 0.0054010480 2.725190 UUUUCC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
SYNCRIP 13 1041 0.033333333 0.0052498992 2.666604 UUUUUU AAAAAA,UUUUUU
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF1 13 1097 0.033333333 0.0055320435 2.591081 GUGUGU,GUUUGU,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
TARDBP 12 1034 0.030952381 0.0052146312 2.569413 GUGUGU,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPU 13 1136 0.033333333 0.0057285369 2.540727 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBM41 5 502 0.014285714 0.0025342604 2.494937 UACAUG,UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CSTF2 11 1022 0.028571429 0.0051541717 2.470761 GUGUGU,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS3 18 1646 0.045238095 0.0082980653 2.446691 AAAUAA,AGAUAA,AUAAAC,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPCL1 14 1381 0.035714286 0.0069629182 2.358737 CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 14 1487 0.035714286 0.0074969770 2.252120 CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA1 13 1428 0.033333333 0.0071997179 2.210953 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 13 1434 0.033333333 0.0072299476 2.204908 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS1 17 1945 0.042857143 0.0098045143 2.128018 AUUUAA,CAAAAU,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
FUS 14 1711 0.035714286 0.0086255542 2.049812 UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 CUUUUU,UUUUUA,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 14 1928 0.035714286 0.0097188634 1.877642 UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF6 8 1196 0.021428571 0.0060308343 1.829106 GUGGUG,UGUGAU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
YTHDC1 8 1254 0.021428571 0.0063230552 1.760842 GAAUGC,GACUGC,GGCUAC,GGCUGC,UAAUGC,UCCUGC,UGAUGC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
FXR2 4 730 0.011904762 0.0036829907 1.692589 AGACGA,GACAAA,GACGAG,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 ACUGCA,AGACGA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUACAU,UAAAUA,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPDL 16 2689 0.040476190 0.0135530028 1.578461 AACAGC,AACCUU,ACAUUA,ACCUUG,ACUAGG,ACUGCA,AGUAGC,CACUAG,CUAACA,CUAGGC,CUUUAA,GUAGCU,UAACAG AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
MBNL1 18 3258 0.045238095 0.0164197904 1.462102 AUGCCA,AUGCUU,CUGCCU,CUGCUG,GCUGCU,GCUUUU,GUGCUU,UGCUGC,UGCUUU,UUGCUU,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACG,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ELAVL4 15 2916 0.038095238 0.0146966949 1.374119 UAUUUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AGUUUG,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
PCBP2 20 4164 0.050000000 0.0209844821 1.252605 AAUUAA,ACAUUA,AUUAAA,CCUCCC,CUCCCA,UUAGAG,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
KHSRP 28 5764 0.069047619 0.0290457477 1.249265 AGCCUC,AUGUAU,AUGUGU,AUUAUU,CAGCCU,CUGCCU,GCCUCC,GUAUGU,GUGUGU,UAUUUU,UGCCUC,UGUAUG,UGUGUA,UGUGUG,UUGUGU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 UAUUUU,UGAUUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPK 14 3244 0.035714286 0.0163492543 1.127276 UCCCAA,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AUUUUC,CUUUUA,CUUUUG,CUUUUU,UAUUUU,UUAAAU,UUUAAA,UUUUAA,UUUUUA,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUC,CUUUUA,CUUUUG,CUUUUU,UAUUUU,UCUCCU,UUCUCC,UUUUUA,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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