ENSG00000148516:+:10:31355143:31387798

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000148516:+:10:31355143:31387798 ENSG00000148516 ENST00000493835 + 10 31355144 31387798 427 CAGCUGUUUAAGGAAGACAGAGCAGGCAUUGGAUAAUAUUCUUAUUAAGUUUUCAGUUUAAAUUCUCAACUGGCAAUUGGCCGAAAACUCCCAUCUGAAGACAUGAUCAUCCAAAUGUCAUUUUGUGAUUUGGCUACUGUCUGCUUGACAUAGGAAAGCACUAUCAAGAAAGACUAAUGGAGUGACUAUCAAAAGGAAGUCAAUGGACAACCUUAAACUUCCACCACAAGAGGAAUAUAAAGAGGUCCCUCCUGCACCAAGAAAGAUCUGCAGAUCUUUUUCAGUGUUCUUGGAGGUGUGGGGUGUGAGAACUUGAUCAGUUUGUGUCAGCCACCUUGUUCUCUAAAGGGAAAGCCCCUCAAACCAUUUUGUAUUCUGUAUUACACUUCAGAAAGUGUGGAAGCAAAGGUCAUCUAAUCUUUAAAAGCAGCUGUUUAAGGAAGACAGAGCAGGCAUUGGAUAAUAUUCUUAUUAAGU circ
ENSG00000148516:+:10:31355143:31387798 ENSG00000148516 ENST00000493835 + 10 31355144 31387798 22 AUCUUUAAAAGCAGCUGUUUAA bsj
ENSG00000148516:+:10:31355143:31387798 ENSG00000148516 ENST00000493835 + 10 31355144 31355153 10 CAGCUGUUUA ie_up
ENSG00000148516:+:10:31355143:31387798 ENSG00000148516 ENST00000493835 + 10 31387789 31387998 210 UCUUUAAAAGGUAUGUAAUCAUAAAAUUUUUUAUGUCAGAUCUUAAUUGAAAAAUAUUACUUAAAACUUGAAAAAAUUACUUAAAAUUGGCAAUUUCUUUUUCGUCUUACAACUUCUUCCUGUCUUCAGGAAAUGAAGAAUAAAUAUGUUGGUUCUAUCAGGGAAACCUUAUGAAGGAUAAGCAAAUUAAUGUCUGUGCUUUACUUCCAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 314 0.004683841 0.0004564992 3.359008 GACAGA GACAGA
ERI1 3 632 0.009367681 0.0009173461 3.352154 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBMY1A1 1 489 0.004683841 0.0007101099 2.721578 ACAAGA ACAAGA,CAAGAC
A1CF 4 1642 0.011709602 0.0023810421 2.298027 AUCAGU,GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPM 2 999 0.007025761 0.0014492040 2.277394 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBM6 2 1054 0.007025761 0.0015289102 2.200151 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CELF4 4 1782 0.011709602 0.0025839306 2.180053 GGUGUG,GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MATR3 1 739 0.004683841 0.0010724109 2.126834 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM24 5 2357 0.014051522 0.0034172229 2.039830 AGUGUG,GAGUGA,GUGUGA,GUGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
IGF2BP1 1 831 0.004683841 0.0012057377 1.957776 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SSB 2 1260 0.007025761 0.0018274462 1.942826 CUGUUU,GCUGUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CELF6 6 2997 0.016393443 0.0043447134 1.915786 GUGGGG,GUGUGG,UGUGAG,UGUGAU,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZNF638 3 1773 0.009367681 0.0025708878 1.865425 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPAB 3 1782 0.009367681 0.0025839306 1.858125 AAAGAC,AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF5 2 1415 0.007025761 0.0020520728 1.775573 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF1 4 2391 0.011709602 0.0034664959 1.756142 CUGUCU,GUUUGU,UGUCUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 4 2400 0.011709602 0.0034795387 1.750724 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TIAL1 20 10182 0.049180328 0.0147572438 1.736658 AGUUUU,AUUUUG,CAGUUU,CUUUUU,GUUUUC,UAAAUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUCAG,UUUUCA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TRA2A 13 6871 0.032786885 0.0099589296 1.719056 AAGAAA,AAGAGG,AGAAAG,AGAGGA,AGGAAG,GAAAGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
NONO 2 1498 0.007025761 0.0021723567 1.693393 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZCRB1 2 1605 0.007025761 0.0023274215 1.593922 GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 2152 0.009367681 0.0031201361 1.586083 AAAACU,AAGACU,AGACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMX 8 4925 0.021077283 0.0071387787 1.561940 AAGGAA,AAGUGU,AGGAAG,AGUGUU,AUCAAA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
QKI 4 2805 0.011709602 0.0040664663 1.525844 ACUAAU,AUCUAA,CUAAUC,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CPEB2 3 2261 0.009367681 0.0032780993 1.514832 CAUUUU,CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
EIF4B 1 1179 0.004683841 0.0017100607 1.453645 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 1 1234 0.004683841 0.0017897669 1.387920 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 1 1237 0.004683841 0.0017941145 1.384420 AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ENOX1 4 3195 0.011709602 0.0046316558 1.338092 AAGACA,AGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ACO1 1 1283 0.004683841 0.0018607779 1.331786 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 1 1283 0.004683841 0.0018607779 1.331786 AAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
MSI1 3 2770 0.009367681 0.0040157442 1.222025 AGGAAG,UAGGAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF10 18 13860 0.044496487 0.0200874160 1.147399 AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGACA,AAGAGG,AAGGAA,AAGGGA,AGAGGA,GAAAGA,GAGAAC,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
U2AF2 1 1477 0.004683841 0.0021419234 1.128785 UUUUUC UUUUCC,UUUUUC,UUUUUU
SRSF4 4 3740 0.011709602 0.0054214720 1.110936 AGGAAG,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RALY 1 1553 0.004683841 0.0022520629 1.056445 UUUUUC UUUUUC,UUUUUG,UUUUUU
YBX1 8 7119 0.021077283 0.0103183321 1.030479 ACCACA,AUCAUC,CACCAC,CAUCUG,CCACAA,CCACCA,GAUCUG,GUCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
ZRANB2 3 3173 0.009367681 0.0045997733 1.026129 AAAGGU,AGGGAA,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FMR1 2 117 0.13636364 0.007728583 4.141111 AGCAGC,GCAGCU AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
ZFP36 2 126 0.13636364 0.008318051 4.035070 AAAAGC,AAAGCA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF2 1 479 0.09090909 0.031438302 1.531901 AAGCAG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 1 216 0.009090909 0.001093309 3.055723 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPM 1 222 0.009090909 0.001123539 3.016375 GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM41 3 502 0.018181818 0.002534260 2.842860 UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
YBX2 1 263 0.009090909 0.001330109 2.772880 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ZNF638 3 646 0.018181818 0.003259774 2.479652 GGUUCU,GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
G3BP2 2 490 0.013636364 0.002473801 2.462658 AGGAUA,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ZCRB1 3 666 0.018181818 0.003360540 2.435731 AAUUAA,ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 505 0.013636364 0.002549375 2.419243 CUGUUU,GCUGUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
IGHMBP2 1 350 0.009090909 0.001768440 2.361947 AAAAAA AAAAAA
RBM46 5 1091 0.027272727 0.005501814 2.309480 AAUCAU,AAUGAA,AUCAUA,AUGAAG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SART3 3 777 0.018181818 0.003919790 2.213648 AAAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
A1CF 2 598 0.013636364 0.003017936 2.175825 UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CELF2 3 881 0.018181818 0.004443773 2.032640 GUAUGU,GUCUGU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
AGO2 2 677 0.013636364 0.003415961 1.997095 AAAAAA,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.018181818 0.004559653 1.995500 AAUCAU,AUCAUA,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC4 1 462 0.009090909 0.002332729 1.962406 AAAAAA AAAAAA,AAAAAG
KHDRBS1 7 1945 0.036363636 0.009804514 1.890978 AUAAAA,UAAAAC,UAAAAG,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS2 3 1051 0.018181818 0.005300282 1.778355 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM3 1 541 0.009090909 0.002730754 1.735125 AAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
KHDRBS3 5 1646 0.027272727 0.008298065 1.716612 AAUAAA,AUAAAA,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SRSF4 1 558 0.009090909 0.002816405 1.690570 GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PPIE 32 9262 0.150000000 0.046669690 1.684405 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAUU,AAUUAA,AAUUUU,AUAAAA,AUAAAU,AUAUUA,AUUAAU,AUUUUU,UAAAAU,UAAAUA,UUAAAA,UUAAUU,UUUAAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
TRA2B 4 1447 0.022727273 0.007295445 1.639357 AAGAAU,AGGAAA,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RC3H1 1 631 0.009090909 0.003184200 1.513494 UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PABPC1 3 1321 0.018181818 0.006660621 1.448768 AAAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPC 5 2006 0.027272727 0.010111850 1.431412 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZRANB2 3 1360 0.018181818 0.006857114 1.406823 AAAGGU,AGGGAA,AGGUAU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPCL1 3 1381 0.018181818 0.006962918 1.384733 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 1 691 0.009090909 0.003486497 1.382646 UUUUUU UUUUUU
DDX19B 1 691 0.009090909 0.003486497 1.382646 UUUUUU UUUUUU
EIF4A3 1 691 0.009090909 0.003486497 1.382646 UUUUUU UUUUUU
SYNCRIP 2 1041 0.013636364 0.005249899 1.377097 AAAAAA,UUUUUU AAAAAA,UUUUUU
U2AF2 2 1071 0.013636364 0.005401048 1.336148 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PUM1 5 2172 0.027272727 0.010948206 1.316764 AAUAUU,UAAAUA,UAAUGU,UGUAAU,UUAAUG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM4 2 1094 0.013636364 0.005516929 1.305522 CUUCCU,CUUCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
CELF1 2 1097 0.013636364 0.005532044 1.301575 CUGUCU,UGUCUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ESRP2 1 731 0.009090909 0.003688029 1.301575 GGGAAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CPEB2 3 1487 0.018181818 0.007496977 1.278116 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 2 1117 0.013636364 0.005632809 1.275532 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
PCBP2 10 4164 0.050000000 0.020984482 1.252605 AAAUUA,AAUUAA,AAUUAC,ACCUUA,CUUAAA,CUUCCA,CUUCCU,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPU 2 1136 0.013636364 0.005728537 1.251220 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PUM2 1 764 0.009090909 0.003854293 1.237958 UAAAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SRSF3 8 3825 0.040909091 0.019276501 1.085578 ACUUCU,CUUCAG,CUUCUU,UACAAC,UACUUC,UCUUCA,UCUUCC,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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