ENSG00000128573:+:7:114162943:114288109

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000128573:+:7:114162943:114288109 ENSG00000128573 ENST00000441290 + 7 114162944 114288109 288 AUCAAACAAAUAAUAGAAGUCUGUUGAAGCUUUGUCCUGACCUAUCCUGGAAGUAGAAGAAUACUCUGGAGAAAGGAGCAUUGUAAGCACAAAGAAUAAGAUUCCUCAAUCCUGAGAGAGAGAAUUAAAGUCUAACUCUCCAAAUUUUCAACAGGAGUUUUGAGUAAAGAAAAUGGAGAAGUUUGUGGGAGAGAAAGGUCUACUCUAAUGUGAUGCUGGGAUUGAAUUUUCCUAGGACUCCGUUUCAAGGUUAAUUCGAAAGUCUUGUGGAAGAUCUGGAAGAAACAGAUCAAACAAAUAAUAGAAGUCUGUUGAAGCUUUGUCCUGACCUAUCCUGG circ
ENSG00000128573:+:7:114162943:114288109 ENSG00000128573 ENST00000441290 + 7 114162944 114288109 22 GGAAGAAACAGAUCAAACAAAU bsj
ENSG00000128573:+:7:114162943:114288109 ENSG00000128573 ENST00000441290 + 7 114162744 114162953 210 AGAUAGAUGUGGGUUUCUUUUAGUGGUGUUAAUUUAAAUACUAGAUUUAUUUAUUAUAAUGUUUAACAAGGCAAUUCUUAUAUUUCUGUUCACCUCAUAUCCAACAGAAAAUAAUAGGAAGCUUCAACCCCCCAGUACAGUAAGAAAAAAAAAACUGAUGCGUUUUGUAAUAAUUGAUUAAAAGUAUAAUUUCCCUCUAGAUCAAACAAA ie_up
ENSG00000128573:+:7:114162943:114288109 ENSG00000128573 ENST00000441290 + 7 114288100 114288309 210 GAAGAAACAGGUAAGUGUCCUUUUGGUAAAAAUUCUCCUUUGGUCAUUGUGCUUAUUUUUAUUUUUCUAAUGCUGAUUUUACUCUUUAGUUUUUUUGGUUAAAUAUGUUUGCCCAAAUGUUAAGAAGUUGUUUUCAGCGGACAAUUGAGACAUGUUAAGUGUGGCAGUAGAAAUAUUAAUCACUGCUAUUGGGAUUCCCAUUUCACUGCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TUT1 1 678 0.006944444 0.0009840095 2.819115 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC5 5 2400 0.020833333 0.0034795387 2.581926 AGAAAA,AGAAAG,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM28 1 822 0.006944444 0.0011926949 2.541634 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SNRNP70 2 1237 0.010416667 0.0017941145 2.537550 GAUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP1 1 831 0.006944444 0.0012057377 2.525943 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ZCRB1 2 1605 0.010416667 0.0023274215 2.162089 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPAB 2 1782 0.010416667 0.0025839306 2.011254 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 1222 0.006944444 0.0017723764 1.970174 AGAAGA AAAAGA,AGAAGA
SRSF4 5 3740 0.020833333 0.0054214720 1.942137 AGAAGA,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ZRANB2 4 3173 0.017361111 0.0045997733 1.916225 AAAGGU,AGGUCU,AGGUUA,GUAAAG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
TRA2B 10 7329 0.038194444 0.0106226650 1.846217 AAAGAA,AAGAAU,AAUAAG,AGAAGA,AUAAGA,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
TRA2A 9 6871 0.034722222 0.0099589296 1.801797 AAAGAA,AAGAAA,AGAAAG,AGAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF10 19 13860 0.069444444 0.0200874160 1.789567 AAAGAA,AAAGGA,AAGAAA,AAGGAG,ACAAAG,AGAGAA,AGAGAG,CAAAGA,GAGAAA,GAGAAG,GAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
QKI 3 2805 0.013888889 0.0040664663 1.772084 CUACUC,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPA3 2 2140 0.010416667 0.0031027457 1.747276 AAGGAG,AGGAGC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
LIN28A 5 4315 0.020833333 0.0062547643 1.735866 AGGAGU,GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SRSF7 19 14481 0.069444444 0.0209873716 1.726338 AAAGGA,AGAAGA,AGAGAA,AGAGAG,AGAUCA,AGAUCU,AUAGAA,CUGAGA,GAAGAA,GAGAGA,GAUUGA,UCAACA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
U2AF2 1 1477 0.006944444 0.0021419234 1.696952 UUUUCC UUUUCC,UUUUUC,UUUUUU
CELF6 3 2997 0.013888889 0.0043447134 1.676598 GUGAUG,UGUGAU,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
A1CF 1 1642 0.006944444 0.0023810421 1.544266 UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 1 1644 0.006944444 0.0023839405 1.542511 GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC1 4 4443 0.017361111 0.0064402624 1.430668 ACAAAU,AGAAAA,CAAACA,CAAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AGO2 1 1830 0.006944444 0.0026534924 1.387967 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CELF2 1 1886 0.006944444 0.0027346479 1.344504 GUCUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CSTF2 1 1967 0.006944444 0.0028520334 1.283868 GUUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPL 4 5085 0.017361111 0.0073706513 1.235995 AAACAA,AAAUAA,AACAAA,CACAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM3 1 2152 0.006944444 0.0031201361 1.154250 AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SFPQ 21 24050 0.076388889 0.0348548043 1.132005 AGAGAG,CUGGAG,CUGGGA,GAAGAA,GGAAGA,GGAGAG,GUGAUG,UAAUGU,UCUGGA,UGAAGC,UGGAAG,UGGAGA,UUAAUU,UUGAAG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
KHDRBS3 2 3429 0.010416667 0.0049707696 1.067353 AAAUAA,AUUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ZFP36 23 28400 0.083333333 0.0411588414 1.017691 AAACAA,AAAGAA,AAAGGA,AAAUAA,AACAAA,AAGAAA,AAUAAG,ACAAAG,ACAAAU,AGAAAG,AGUAAA,CAAACA,CAAAGA,CAAAUA,GUAAAG,UAAAGA,UAAGCA,UCUUGU,UUGUGG AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
CELF1 1 2391 0.006944444 0.0034664959 1.002381 GUUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRNP70 1 7 0.09090909 0.0005239717 7.438792 GAUCAA AAUCAA,AUUCAA,GUUCAA,UUCAAG
RBM46 1 14 0.09090909 0.0009824469 6.531901 GAUCAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
NOVA2 1 15 0.09090909 0.0010479434 6.438792 AGAUCA ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
SRSF3 1 61 0.09090909 0.0040607807 4.484596 GAUCAA AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC
SRSF6 1 68 0.09090909 0.0045192560 4.330267 GAUCAA AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SRSF7 1 128 0.09090909 0.0084490438 3.427565 AGAUCA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
IGHMBP2 5 350 0.014285714 0.0017684401 3.014024 AAAAAA AAAAAA
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA AAAAAA,AAAAAG
ZFP36L2 9 774 0.023809524 0.0039046755 2.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SART3 9 777 0.023809524 0.0039197904 2.602690 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPD 15 1488 0.038095238 0.0075020153 2.344261 AAAAAA,AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
AGO2 6 677 0.016666667 0.0034159613 2.286602 AAAAAA,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
A1CF 5 598 0.014285714 0.0030179363 2.242939 AGUAUA,AUAAUU,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
ELAVL1 27 3309 0.066666667 0.0166767432 1.999128 AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC1 10 1321 0.026190476 0.0066606207 1.975314 AAAAAA,AAAAAC,AGAAAA,CAAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 AAAAAA,CCCCCC,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ELAVL4 22 2916 0.054761905 0.0146966949 1.897681 AAAAAA,AUUUAU,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ELAVL3 14 1928 0.035714286 0.0097188634 1.877642 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 AAAAAA,UUUUUU AAAAAA,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AUUUAA,GAUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAUACU,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,AGGAAG,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PPIE 61 9262 0.147619048 0.0466696896 1.661321 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAUAAU,AAUAUU,AAUUUA,AUAAUA,AUAAUU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAAUAA,UAAUUU,UAUAAU,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 AGACAU,AGAUCA,CUAGAU,GAGACA,UAGAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
TIA1 30 5140 0.073809524 0.0259018541 1.510752 AUUUUU,CUCCUU,CUUUUA,CUUUUG,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
QKI 4 904 0.011904762 0.0045596534 1.384543 CUCAUA,UAAUCA,UCAUAU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 CAAACA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGAAG,AAGUGU,AGGAAG,AUCAAA,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAGAAA,AAGAAG,AGGAAG,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGUACA,CGGACA,GUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
FUS 8 1711 0.021428571 0.0086255542 1.312847 AAAAAA,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AAAAAA,AAUUUA,AGGAAG,AGGUAA,AGUAAG,AGUAUA,UAGGAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUUUAA,UAAAAA,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TIAL1 27 5597 0.066666667 0.0282043531 1.241048 AGUUUU,AUUUUA,AUUUUU,CUUUUA,CUUUUG,GUUUUC,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 48 9826 0.116666667 0.0495112858 1.236563 AAUUUA,AUAUUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,CUUAUA,CUUUUA,GAUUUA,GAUUUU,GUUUUC,GUUUUU,UAAUUU,UAUAUU,UAUGUU,UAUUAU,UAUUUA,UAUUUU,UCUUAU,UCUUUU,UGAUUU,UUAAGU,UUAAUU,UUAGUU,UUAUAU,UUAUUU,UUCUUU,UUGAUU,UUUACU,UUUAGU,UUUAUU,UUUCUU,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SF1 5 1294 0.014285714 0.0065245869 1.130615 AGUAAG,AUACUA,UAACAA,UACUAG,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,GGAUUC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
HNRNPK 13 3244 0.033333333 0.0163492543 1.027741 AAAAAA,ACCCCC,CAACCC,CCCCCA,CCCCCC,GCCCAA,UCCCAU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AAAUAA,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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