ENSG00000171634:+:17:67975771:67975958

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000171634:+:17:67975771:67975958 ENSG00000171634 ENST00000321892 + 17 67975772 67975958 187 ACCUUGCCACCAUGGAAGAAAGAGUACAAAGACGAUAUUAUGAAAAGCUGACGGAAUUUGUGGCAGAUAUGACCAAAAUUUUUGAUAACUGUCGUUACUACAAUCCAAGUGACUCCCCAUUUUACCAGUGUGCAGAAGUUCUCGAAUCAUUCUUUGUACAGAAAUUGAAAGGCUUCAAAGCUAGCAGACCUUGCCACCAUGGAAGAAAGAGUACAAAGACGAUAUUAUGAAAAGCUG circ
ENSG00000171634:+:17:67975771:67975958 ENSG00000171634 ENST00000321892 + 17 67975772 67975958 22 AAAGCUAGCAGACCUUGCCACC bsj
ENSG00000171634:+:17:67975771:67975958 ENSG00000171634 ENST00000321892 + 17 67975572 67975781 210 AUUUUAGAACCUCAAUCAGAAACAAAAUUGGAAAAGUACUCUUUUGUUCUUUAUGAAUUGCAAAAUAACCUCCAGGGUGAACCAGCCUGGCUCCAGGACUGCUUGCACAGUAAACAUAUAUACUUGUUAGAACUUCGGAGAAUAUUCACAUUGGAAAAACCUUAAAGCUCUGAAAAUGUUUUACAUUUUGUGUUUUUAAGACCUUGCCAC ie_up
ENSG00000171634:+:17:67975771:67975958 ENSG00000171634 ENST00000321892 + 17 67975949 67976158 210 AAGCUAGCAGGUGAGCAGAUGGGUUCGGUAUUCUGAAUUAAUUCAACUCUUCACACUCUUUAUACUAUUCUGUCUAACGAUUCAACCAGUGCAGUUUAUGGUAAAUUUAACCUUAAAUAUCUUUAAAAAAAAAAUAAAUAAAUCAAGACUCCAGGGUUAUGAUCUACUGCCAAGGAGAAGUGGACAAAUUGCUGGGUUUGUUGUUGAUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 3 339 0.02139037 0.0004927293 5.440023 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPA0 1 453 0.01069519 0.0006579386 4.022865 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBM6 2 1054 0.01604278 0.0015289102 3.391349 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPAB 3 1782 0.02139037 0.0025839306 3.049322 AAAGAC,ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM3 3 2152 0.02139037 0.0031201361 2.777281 AAGACG,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC5 3 2400 0.02139037 0.0034795387 2.619994 AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ACO1 1 1283 0.01069519 0.0018607779 2.522984 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
FXR2 4 3434 0.02673797 0.0049780156 2.425247 AGACGA,GACGGA,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPCL1 2 2062 0.01604278 0.0029897078 2.423848 AUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 2 2261 0.01604278 0.0032780993 2.290993 AUUUUU,CAUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 1 1553 0.01069519 0.0022520629 2.247643 UUUUUG UUUUUC,UUUUUG,UUUUUU
ENOX1 3 3195 0.02139037 0.0046316558 2.207362 AGUACA,GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 1 1890 0.01069519 0.0027404447 1.964480 UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBM46 3 4554 0.02139037 0.0066011240 1.696178 AAUCAU,AUCAUU,AUGAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPC 2 3471 0.01604278 0.0050316361 1.672825 AUUUUU,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPLL 2 3534 0.01604278 0.0051229360 1.646881 AGACGA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBM24 1 2357 0.01069519 0.0034172229 1.646065 AGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SRSF4 2 3740 0.01604278 0.0054214720 1.565168 GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
KHDRBS1 2 4064 0.01604278 0.0058910141 1.445336 CAAAAU,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TRA2A 4 6871 0.02673797 0.0099589296 1.424827 AAGAAA,AGAAAG,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
QKI 1 2805 0.01069519 0.0040664663 1.395114 AAUCAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPD 1 2837 0.01069519 0.0041128408 1.378755 AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL3 1 2867 0.01069519 0.0041563169 1.363584 AUUUUA AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPDL 5 8759 0.03208556 0.0126950266 1.337661 ACCUUG,AGAUAU,CCUUGC,CUAGCA,CUUGCC AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
TIAL1 5 10182 0.03208556 0.0147572438 1.120501 AAAUUU,AAUUUU,AUUUUA,AUUUUU,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF5 4 8869 0.02673797 0.0128544391 1.056623 GAAGAA,GGAAGA,UACAGA,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF2 1 479 0.09090909 0.0314383 1.531901 AGCAGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
SNRNP70 4 253 0.011904762 0.0012797259 3.217632 AAUCAA,AUCAAG,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGHMBP2 5 350 0.014285714 0.0017684401 3.014024 AAAAAA AAAAAA
HNRNPA3 4 349 0.011904762 0.0017634019 2.755106 AAGGAG,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
EIF4B 2 226 0.007142857 0.0011436921 2.642803 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA AAAAAA,AAAAAG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
SART3 7 777 0.019047619 0.0039197904 2.280762 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACUU,UACAUU,UACUUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GGUUCG,GUUCUU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
AGO2 5 677 0.014285714 0.0034159613 2.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 6 904 0.016666667 0.0045596534 1.869970 AUCUAC,CACACU,CUAACG,UAACCU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,CAUAUA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPC1 8 1321 0.021428571 0.0066606207 1.685807 AAAAAA,AAAAAC,ACAAAU,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,UAAAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SYNCRIP 5 1041 0.014285714 0.0052498992 1.444212 AAAAAA AAAAAA,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAACAA,AAAUAA,AACAAA,AAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,CGGAGA,GGAGAA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CELF1 5 1097 0.014285714 0.0055320435 1.368689 CUGUCU,GUUUGU,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPU 5 1136 0.014285714 0.0057285369 1.318335 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AAUAAA,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAAAAA,AAUUUA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUUGUU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAAC,AAAUCA,AAUUCA,ACACUC,CAAUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAAAAA,AAGGAG,AGGGUG,CAAGGA,CUCUUC AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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