ENSG00000183527:-:21:39177434:39181878

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000183527:-:21:39177434:39181878 ENSG00000183527 ENST00000331573 - 21 39177435 39181878 658 GGAAGUGCGGCUCCUUCGAAGACAAACAAAAACAUCUUUGGAAGUUUCUUUGCUAGAAAAAUAUCCGUGCUCCAAGUUUAUAAUUGCUAUAGGAAAUAAUGCAGUAGCAUUUCUGUCAUCAUUUGUUAUGAAUUCAGGAGUCUGGGAGGAAGUUGGUUGUGCUAAACUCUGGAAUGAAUGGUGUAGAACAACAGACACUACACAUCUGUCCUCCACAGAGGCUUUUUGUGUGUUUUAUCAUCUAAAAUCCAAUCCCUCGGUUUUUCUCUGUCAGUGCAGUUGCUAUGUUGCAGAAGAUCAACAGUAUCAGUGGCUGGAAAAGGUUUUUGGCUCUUGUCCAAGGAAGAACAUGCAGAUAACUAUUCUCACAUGUCGACAUGUUACCGAUUAUAAAACCUCAGAAUCCACCGGCAGCCUUCCUUCUCCUUUCCUGAGAGCCCUAAAAACACAGAAUUUCAAAGACUCGGCGUGUUGUCCAUUGCUAGAACAACCGAAUAUAGUACACGACCUUCCUGCAGCAGUUCUAAGCUACUGUCAAGUAUGGAAAAUCCCAGCAAUUCUGUACUUGUGUUAUACUGAUGUGAUGAAAUUAGACCUAAUCACAGUGGAAGCUUUUAAGCCUAUACUUUCUACCAGAAGCUUGAAGGGUUUGGUUAAGGGAAGUGCGGCUCCUUCGAAGACAAACAAAAACAUCUUUGGAAGUUUCUU circ
ENSG00000183527:-:21:39177434:39181878 ENSG00000183527 ENST00000331573 - 21 39177435 39181878 22 GUUUGGUUAAGGGAAGUGCGGC bsj
ENSG00000183527:-:21:39177434:39181878 ENSG00000183527 ENST00000331573 - 21 39181869 39182078 210 GAGUUCUCCGUAAACACGUAUGCAAUAGUUUUAUCUGUUGGUUAUCAUUGUCCGAGUCCAUCGUUUUCUGAGGAUAUUAGUUAUAUUCUUUAUAAAACUAACGUGCAUUUUAUUUAUUGUAAAUCAUACAUAUAGUGCCCUUUUGCCAUGAUACUGUUUAUAUUGAAGUUGCUUUAGUUUCAUCUUGUUUCUUGUGUUAGGGAAGUGCGG ie_up
ENSG00000183527:-:21:39177434:39181878 ENSG00000183527 ENST00000331573 - 21 39177235 39177444 210 UUUGGUUAAGGUAAGGUUUUAACUCAUUUAAAUUAAUAGCUGCAUUGUUAUAAUCAGCUUAGUAACAAACAUAAAUGUAUACUGUCAUUUUAAACCCUAAGCAAUGCUUGGAGAUCCAUUCUUCUCAAAGCGAAGCUUUCUAGUCUGGCAGUUUGAAUUUGAUUGUCAUCAUCUCUUCUGUAUACGUCUGUAACUUGACGAAUGCUUUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF5 6 1415 0.010638298 0.0020520728 2.374114 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPC3 5 1234 0.009118541 0.0017897669 2.349031 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
YBX2 6 1480 0.010638298 0.0021462711 2.309363 AACAAC,AACAUC,ACAACA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CELF1 9 2391 0.015197568 0.0034664959 2.132291 GUGUGU,GUGUUG,GUUGUG,UGUGUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CSTF2 7 1967 0.012158055 0.0028520334 2.091850 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SNRPB2 3 991 0.006079027 0.0014376103 2.080168 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 1 497 0.003039514 0.0007217036 2.074362 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
CELF4 6 1782 0.010638298 0.0025839306 2.041628 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM6 3 1054 0.006079027 0.0015289102 1.991337 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CELF2 6 1886 0.010638298 0.0027346479 1.959840 GUGUGU,UAUGUU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM28 2 822 0.004559271 0.0011926949 1.934578 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 5 1782 0.009118541 0.0025839306 1.819236 AAAGAC,AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ACO1 3 1283 0.006079027 0.0018607779 1.707935 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 3 1283 0.006079027 0.0018607779 1.707935 AAUAUA,AUAUAG,CUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
A1CF 4 1642 0.007598784 0.0023810421 1.674175 AUAAUU,AUCAGU,CAGUAU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM41 3 1318 0.006079027 0.0019115000 1.669135 AUACUU,UACUUG,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 7 2654 0.012158055 0.0038476365 1.659868 GAAUGA,GAAUGG,GUGUGU,GUUGUG,UGAAUG,UGUGUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBM4 8 3065 0.013677812 0.0044432593 1.622147 CCUUCC,CCUUCU,CUUCCU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
MATR3 1 739 0.003039514 0.0010724109 1.502983 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGF2BP3 12 4815 0.019756839 0.0069793662 1.501184 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AACACA,AAUUCA,ACAAAC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RALY 3 1553 0.006079027 0.0022520629 1.432593 UUUUUC,UUUUUG UUUUUC,UUUUUG,UUUUUU
CELF6 6 2997 0.010638298 0.0043447134 1.291934 GUGAUG,GUGUUG,UGUGAU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZNF638 3 1773 0.006079027 0.0025708878 1.241574 GGUUGU,GUUGGU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RC3H1 3 1786 0.006079027 0.0025897275 1.231040 CCUUCU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
TIA1 18 9206 0.028875380 0.0133428208 1.113776 CCUUUC,CUCCUU,CUUUUA,CUUUUU,GUUUUA,GUUUUU,UCCUUU,UCUCCU,UUCUCC,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUC,UUUUUG AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC1 8 4443 0.013677812 0.0064402624 1.086646 AAAAAC,ACAAAC,AGAAAA,CAAACA,CGAAUA,CUAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPM 1 999 0.003039514 0.0014492040 1.068580 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPCL1 3 2062 0.006079027 0.0029897078 1.023836 CUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP2 1 14 0.09090909 0.0009824469 6.531901 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA
HNRNPH3 3 61 0.18181818 0.0040607807 5.484596 AAGGGA,AGGGAA,GGGAAG AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 3 80 0.18181818 0.0053052135 5.098942 AAGGGA,AGGGAA,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPF 3 90 0.18181818 0.0059601782 4.930997 AAGGGA,AGGGAA,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 3 90 0.18181818 0.0059601782 4.930997 AAGGGA,AGGGAA,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
ZRANB2 1 45 0.09090909 0.0030128373 4.915230 AGGGAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
RBM5 1 56 0.09090909 0.0037332984 4.605902 AGGGAA AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
SFPQ 2 153 0.13636364 0.0100864553 3.756968 AAGGGA,UAAGGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
FMR1 1 117 0.09090909 0.0077285827 3.556149 AAGGGA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF10 1 160 0.09090909 0.0105449306 3.107875 AAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 56 0.004761905 0.0002871826 4.051499 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PUM2 5 764 0.014285714 0.0038542926 1.890035 GUAAAU,UACAUA,UGUAAA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
QKI 6 904 0.016666667 0.0045596534 1.869970 AAUCAU,ACUAAC,ACUCAU,AUCAUA,CUAACG,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACAAAC,CAAACA,CAUACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AUAUAG,CAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAACAC,AAAUCA,AACUCA,ACAAAC,CAAACA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 AUUUAU,UAGUUU,UAUUUA,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AUUUAU,UAUUUA,UUAGGG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUAAC,AGUAAC,UAACAA,UAGUAA,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AUCAUA,AUCAUU,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home