ENSG00000137073:-:9:33941648:33953474

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000137073:-:9:33941648:33953474 ENSG00000137073 ENST00000684298 - 9 33941649 33953474 1063 CAUUGAUCUGGUAGCCUUGCUCCAGAAGCCUGUUCCUCACAGUCAAGCCUCAGAAGCCAACUCCUUUGAAACUUCCCAACAGCAGGGCUUUGGCCAAGCCCUUGUCUUCACAAAUUCGCAACACAACAAUCAGAUGGCACCAGGGACUGGCAGCUCCACUGCCGUCAACUCCUGUUCUCCUCAGAGCCUGUCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUGACUUCAAAUCUCAACCUGAGCCAUCCCCAGUUCUUAGCCAGUUGAGCCAGCGACAACAGCACCAGAGCCAGGCAGUCACUGUUCCUCCUCCUGGUUUGGAGUCCUUUCCUUCCCAGGCAAAACUUCGAGAAUCAACACCUGGAGACAGUCCCUCCACUGUGAACAAGCUUUUGCAGCUUCCCAGCACGACCAUUGAAAAUAUCUCUGUGUCUGUCCACCAGCCACAGCCCAAACACAUCAAACUUGCUAAGCGGCGGAUACCCCCAGCUUCUAAGAUCCCAGCUUCUGCAGUGGAAAUGCCUGGUUCAGCAGAUGUCACAGGAUUAAAUGUGCAGUUUGGGGCUCUGGAAUUUGGGUCAGAACCUUCUCUCUCUGAAUUUGGAUCAGCUCCAAGCAGUGAAAAUAGUAAUCAGAUUCCCAUCAGCUUGUAUUCGAAGUCUUUAAGUGAGCCUUUGAAUACAUCUUUAUCAAUGACCAGUGCAGUACAGAACUCCACAUAUACAACUUCCGUCAUUACCUCCUGCAGUCUGACAAGCUCAUCACUGAAUUCUGCUAGUCCAGUAGCAAUGUCUUCCUCUUAUGACCAGAGUUCUGUGCAUAACAGGAUCCCAUACCAAAGCCCUGUGAGUUCAUCAGAGUCAGCUCCAGGAACCAUCAUGCAUUGAUCUGGUAGCCUUGCUCCAGAAGCCUGUUCCUCACAGUCAAGCCU circ
ENSG00000137073:-:9:33941648:33953474 ENSG00000137073 ENST00000684298 - 9 33941649 33953474 22 GAACCAUCAUGCAUUGAUCUGG bsj
ENSG00000137073:-:9:33941648:33953474 ENSG00000137073 ENST00000684298 - 9 33953465 33953674 210 AACCCUGCUUCAGUCUCUGUGGCUUGGUAUGUUCUUUUGUGUGGAUGAUGCCCUCCUUUUGCCCCCUUAAACCCCAUUUUCCAAAGGUUCUCCUCAUUUGAUUUUUAAUGUAAAUUCACUAUAUAUUGAUUGACUUCUCACAUUCAUUUGUUGGUAAGAUUUGCUUAUGACUGGUUCCUCAUUGCUUUUUGUCUGCUUAGCAUUGAUCUG ie_up
ENSG00000137073:-:9:33941648:33953474 ENSG00000137073 ENST00000684298 - 9 33941449 33941658 210 AACCAUCAUGGUAAGUGGUAUUUUAGUUUUUUUCUCAGAAGAUGUCCGUCUUAUUUGGAAAUUAAUGUUUGGUUAAAUUAUGCUUCUUGGAUAUGAUUUUAUUUUACAAAUUGACUAACCUUUUGAGUAGAAUCCUUAUAGUUCAUUGAGUUUGUUUAUAGUGGGCAUCUCUAGCACCCAUGCUCUUGAGUGUGUGGAUAGAUCUGCAGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001881468 0.0001130379 4.056980 GCAUAA GCAUAA
PTBP2 2 267 0.002822201 0.0003883867 2.861255 CUCUCU CUCUCU
NXF1 1 286 0.001881468 0.0004159215 2.177475 AACCUG AACCUG
YBX2 9 1480 0.009407338 0.0021462711 2.131954 AACAUC,ACAACA,ACAACU,ACAUCA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRPB2 5 991 0.005644403 0.0014376103 1.973148 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
MATR3 3 739 0.003762935 0.0010724109 1.811001 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM42 1 407 0.001881468 0.0005912752 1.669957 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBMS1 1 497 0.001881468 0.0007217036 1.382380 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
NOVA1 14 3872 0.014111007 0.0056127669 1.330037 AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,CAGUCA,UCAGUC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NELFE 10 3028 0.010348071 0.0043896388 1.237188 CUCUCU,CUCUGG,CUGGUU,UCUCUC,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SRP14 2 847 0.002822201 0.0012289250 1.199424 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RC3H1 5 1786 0.005644403 0.0025897275 1.124021 CCUUCU,CUUCUG,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ACO1 3 1283 0.003762935 0.0018607779 1.015953 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YTHDC1 1 20 0.09090909 0.001375426 6.046474 UCAUGC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
EIF4B 2 226 0.007142857 0.0011436921 2.642803 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
RBM24 8 888 0.021428571 0.0044790407 2.258274 AGUGUG,GAGUGU,GUGUGG,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GGUUCU,GUUCUU,GUUGGU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CELF2 6 881 0.016666667 0.0044437727 1.907109 GUAUGU,GUGUGU,UAUGUU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF4 5 776 0.014285714 0.0039147521 1.867580 GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF1 7 1097 0.019047619 0.0055320435 1.783726 GUGUGU,GUUUGU,UGUCUG,UGUGUG,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ELAVL1 20 3309 0.050000000 0.0166767432 1.584091 UAGUUU,UAUUUU,UGAUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
NOVA1 8 1428 0.021428571 0.0071997179 1.573523 AGCACC,AUUCAU,CAUUCA,UCAGUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 GGAUAG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TIA1 25 5140 0.061904762 0.0259018541 1.256995 AUUUUC,AUUUUU,CUCCUU,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 27 5597 0.066666667 0.0282043531 1.241048 AGUUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUG,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUCAGU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
MBNL1 15 3258 0.038095238 0.0164197904 1.214175 AUGCCC,AUGCUC,AUGCUU,CCUGCU,CUGCUU,GCUUUU,UCUGCU,UGCUUC,UGCUUU,UUGCCC,UUGCUU,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,UGUGUG,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUGGUU,GUCUCU,UCUCUG,UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUAUA,CUUUUU,GAUUUU,GUUUUU,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UUAGUU,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUUAAU,UUUAGU,UUUAUA,UUUAUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUGUU,GUAAAU,UAAUGU,UAUAUA,UGUAAA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AUCAUG,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 CAUCAU,CCCUGC,GAUCUG,GUCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUAAC,CUAACC,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
KHSRP 24 5764 0.059523810 0.0290457477 1.035140 AUUUUA,CCCCCU,CCCCUU,CCCUCC,CUCCUU,CUGCUU,GCCCUC,GUAUGU,GUGUGU,UAUAUU,UAUUUU,UGCUUC,UGUGUG,UUAUUU,UUGUGU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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