ENSG00000112118:-:6:52269085:52279599

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000112118:-:6:52269085:52279599 ENSG00000112118 ENST00000616552 - 6 52269086 52279599 1437 GAUGAGGAGAACAAUCCCCUUGAGACAGAAUAUGGCCUUUCUGUCUACAAGGAUCACCAGACCAUCACCAUCCAGGAGAUGCCGGAGAAGGCCCCAGCCGGCCAGCUCCCCCGCUCUGUGGACGUCAUUCUGGAUGAUGACUUGGUGGAUAAAGCGAAGCCUGGUGACCGGGUUCAGGUGGUGGGAACCUACCGUUGCCUUCCUGGAAAGAAGGGAGGCUACACCUCUGGGACCUUCAGGACUGUCCUGAUUGCCUGUAAUGUUAAGCAGAUGAGCAAGGAUGCUCAGCCCUCUUUCUCUGCUGAGGAUAUAGCCAAGAUCAAGAAGUUCAGUAAAACCCGAUCCAAGGAUAUCUUUGACCAGCUGGCCAAGUCAUUGGCCCCAAGUAUCCAUGGGCAUGACUAUGUCAAGAAAGCAAUCCUCUGCUUGCUCUUGGGAGGGGUGGAACGAGACCUAGAAAAUGGCAGCCACAUCCGUGGGGACAUCAAUAUUCUUCUAAUAGGAGACCCAUCCGUUGCCAAGUCUCAGCUUCUGCGGUAUGUGCUUUGCACUGCACCCCGAGCUAUCCCCACCACUGGCCGGGGCUCCUCUGGAGUGGGUCUGACGGCUGCUGUCACCACAGACCAGGAAACAGGAGAGCGCCGUCUGGAAGCAGGGGCCAUGGUCCUGGCUGACCGAGGCGUGGUUUGCAUUGAUGAAUUUGACAAAAUGUCUGACAUGGAUCGCACAGCCAUCCAUGAAGUGAUGGAGCAGGGUCGAGUGACCAUUGCCAAGGCUGGCAUCCAUGCUCGGCUGAAUGCCCGCUGCAGUGUUUUGGCAGCUGCCAACCCUGUCUACGGCAGGUAUGACCAGUAUAAGACUCCAAUGGAGAACAUUGGGCUACAGGACUCACUGCUGUCACGAUUUGACUUGCUCUUCAUCAUGCUGGAUCAGAUGGAUCCUGAGCAGGAUCGGGAGAUCUCAGACCAUGUCCUUCGGAUGCACCGUUACAGAGCACCUGGGGAGCAGGAUGGCGAUGCUAUGCCCUUGGGUAGUGCUGUGGAUAUCCUGGCCACAGAUGAUCCCAACUUUAGCCAGGAAGAUCAGCAGGACACCCAGAUUUAUGAGAAGCAUGACAACCUUCUACAUGGGACCAAGAAGAAAAAGGAGAAGAUGGUGAGUGCAGCAUUCAUGAAGAAGUACAUCCAUGUGGCCAAAAUCAUCAAGCCUGUCCUGACACAGGAGUCGGCCACCUACAUUGCAGAAGAGUAUUCACGCCUGCGCAGCCAGGAUAGCAUGAGCUCAGACACCGCCAGGACAUCUCCAGUUACAGCCCGAACACUGGAAACUCUGAUUCGACUGGCCACAGCCCAUGCGAAGGCCCGCAUGAGCAAGACUGUGGACCUGCAGGAUGCAGAGGAAGCUGUGGAGUUGGUCCAGUAUGCUUACUUUAAGAAGGAUGAGGAGAACAAUCCCCUUGAGACAGAAUAUGGCCUUUCUGUCUACAA circ
ENSG00000112118:-:6:52269085:52279599 ENSG00000112118 ENST00000616552 - 6 52269086 52279599 22 ACUUUAAGAAGGAUGAGGAGAA bsj
ENSG00000112118:-:6:52269085:52279599 ENSG00000112118 ENST00000616552 - 6 52279590 52279799 210 UUCAGACUAUGGGUUGCCCCUUCCAUUCGAUGGUUGUUACUAAAACAGACAGGAACACAAAAAGCUAGAGAAGGUACUUGGCUUUUUUUGUUACUGAAUAAUAAAAUUUUAUGAAGUCAUCUUAUUUGCCAUGACAGGUGAGUGUGGCAUUUUUAAGACAGGACGGAGAUCACUCUGUCCCUCUGUGUGCCUUUUUCUAGGAUGAGGAGA ie_up
ENSG00000112118:-:6:52269085:52279599 ENSG00000112118 ENST00000616552 - 6 52268886 52269095 210 CUUUAAGAAGGUGAGGAUUCAGAUGCCUGGGCAUGAGAGGAUCUCCUGGAUAUAUUACAGAUGCAUGGGCUUCCCAGCCUUCCGUGGCUGACGGCUACAUUUGGAUUGUCAACAGAAAGCAGUAUUUGUCUUCCAGUCAUCAGUCUGCCUCACUCUUUCCUCUGAAACACUCAGUGAUUCUCAACCCUGACUGCACCAGAGAAUCAGAUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 5 688 0.004175365 0.0009985015 2.064066 AAGAAG AAGAAG
G3BP2 12 1644 0.009046625 0.0023839405 1.924031 AGGAUA,AGGAUG,GGAUAA,GGAUAG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM6 7 1054 0.005567154 0.0015289102 1.864436 AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM25 1 268 0.001391788 0.0003898359 1.836001 AUCGGG AUCGGG,CGGGCA,UCGGGC
RBFOX1 6 1077 0.004871260 0.0015622419 1.640677 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CNOT4 1 314 0.001391788 0.0004564992 1.608256 GACAGA GACAGA
RBMS1 2 497 0.002087683 0.0007217036 1.532424 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 4 847 0.003479471 0.0012289250 1.501471 CCUGUA,CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
HNRNPA3 10 2140 0.007654836 0.0031027457 1.302826 AAGGAG,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
FXR1 1 411 0.001391788 0.0005970720 1.220963 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
A1CF 6 1642 0.004871260 0.0023810421 1.032702 AGUAUA,CAGUAU,GAUCAG,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
LIN28A 17 4315 0.012526096 0.0062547643 1.001909 AGGAGA,AGGAGU,CGGAGA,GGAGAA,GGAGAU,GGAGGG,UGGAGA,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPM 1 5 0.09090909 0.0003929788 7.853829 GAAGGA AAGGAA,GAAGGA
G3BP2 2 9 0.13636364 0.0006549646 7.701826 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUGA,GGAUGG,GGAUUG
RBMX 2 34 0.13636364 0.0022923762 5.894471 AGAAGG,GAAGGA AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
TRA2B 2 51 0.13636364 0.0034058161 5.323315 AGAAGG,GAAGGA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 AGGAUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 GAAGGA AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
RBM5 1 56 0.09090909 0.0037332984 4.605902 GAAGGA AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
FMR1 3 117 0.18181818 0.0077285827 4.556149 AAGGAU,AGGAUG,GAAGGA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF9 1 134 0.09090909 0.0088420225 3.361976 GAAGGA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SFPQ 1 153 0.09090909 0.0100864553 3.172005 GAAGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF1 3 625 0.18181818 0.0410007860 2.148773 AGAAGG,GAAGGA,GGAUGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG,UGCAUG UGACUG,UGCAUG
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 GCAUGA,UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
FXR2 9 730 0.023809524 0.0036829907 2.692589 AGACAG,GACAGG,GACGGA,GGACGG,UGACAG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA UUCAGA,UUUCAG
NONO 3 364 0.009523810 0.0018389762 2.372636 AGAGGA,AGGAAC,GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
G3BP2 4 490 0.011904762 0.0024738009 2.266737 AGGAUG,AGGAUU,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
RBM24 5 888 0.014285714 0.0044790407 1.673311 AGUGUG,GAGUGU,GUGUGG,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AAGACA,AGACAG,CAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUU,UACUUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,GGAUAU,GGAUUC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AGAUCA,AGUCAU,GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCCUUC,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGU,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACAGAC,CAGUCA,GCUGAC,UACUAA,UACUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AAGAAG,AGACUA,AGAGAA,AGAGGA,AGAUCA,CAGAGA,CUAGAG,GAGAUC,UAGAGA,UCAACA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAACA,AAACAC,AACACA,ACACUC,CACUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
LIN28A 3 900 0.009523810 0.0045395002 1.069005 AGGAGA,CGGAGA,GGAGAU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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