ENSG00000229807:-:X:73826114:73833374

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000229807:-:X:73826114:73833374 ENSG00000229807 ENST00000650627 - X 73826115 73833374 2380 GACAUUCUGAGCAUGUGAGACCUGAGGACUGCAAACAGCUAUAAGAGGCUCCAAAUUAAUCAUAUCUUUCCCUUUGAGAAUCUGGCCAAGCUCCAGCUAAUCUACUUGGAUGGGUUGCCAGCUAUCUGGAGAAAAAGAUCUUCCUCAGAAGAAUAGGCUUGUUGUUUUACAGUGUUAGUGAUCCAUUCCCUUUGACGAUCCCUAGGUGGAGAUGGGGCAUGAGGAUCCUCCAGGGGAAAAGCUCACUACCACUGGGCAACAACCCUAGGUCAGGAGGUUCUGUCAAGAUACUUUCCUGGUCCCAGAUAGGAAGAUAAAGUCUCAAAAACAACCACCACACGUCAAGCUCUUCAUUGUUCCUAUCUGCCAAAUCAUUAUACUUCCUACAAGCAGUGCAGAGAGCUGAGUCUUCAGCAGGUCCAAGAAAUUUGAACACACUGAAGGAAGUCAGCCUUCCCACCUGAAGAUCAACAUGCCUGGCACUCUAGCACUUGAGGAUAGCUGAAUGAAUGUGUAUUUCUUUGUCUCUUUCUUUCUUGUCUUUGCUCUUUGUUCUCUAUCUAAAGUGUGUCUUACCCAUUUCCAUGUUUCUCUUGCUAAUUUCUUUCGUGUGUGCCUUUGCCUCAUUUUCUCUUUUUGUUCACAAGAGUGGUCUGUGUCUUGUCUUAGACAUAUCUCUCAUUUUUCAUUUUGUUGCUAUUUCUCUUUGCUCUCCUAGAUGUGGCUCUUCUUUCACGCUUUAUUUCAUGUCUCCUUUUUGGGUCACAUGCUGUGUGCUUUUUGUCCUUUUCUUGUUCUGUCUACCUCUCCUUUCUCUGCCUACCUCUCUUUUCUCUUUGUGAACUGUGAUUAUUUGUUACCCCUUCCCCUUCUCGUUCGUUUUAAAUUUCACCUUUUUUCUGAGUCUGGCCUCCUUUCUGCUGUUUCUACUUUUUAUCUCACAUUUCUCAUUUCUGCAUUUCCUUUCUGCCUCUCUUGGGCUAUUCUCUCUCUCCUCCCCUGCGUGCCUCAGCAUCUCUUGCUGUUUGUGAUUUUCUAUUUCAGUAUUAAUCUCUGUUGGCUUGUAUUUGUUCUCUGCUUCUUCCCUUUCUACUCACCUUUGAGUAUUUCAGCCUCUUCAUGAAUCUAUCUCCCUCUCUUUGAUUUCAUGUAAUCUCUCCUUAAAUAUUUCUUUGCAUAUGUGGGCAAGUGUACGUGUGUGUGUGUCAUGUGUGGCAGAGGGGCUUCCUAACCCCUGCCUGAUAGGUGCAGAACGUCGGCUAUCAGAGCAAGCAUUGUGGAGCGGUUCCUUAUGCCAGGCUGCCAUGUGAGAUGAUCCAAGACCAAAACAAGGCCCUAGACUGCAGUAAAACCCAGAACUCAAGUAGGGCAGAAGGUGGAAGGCUCAUAUGGAUAGAAGGCCCAAAGUAUAAGACAGAUGGUUUGAGACUUGAGACCCGAGGACUAAGAUGGAAAGCCCAUGUUCCAAGAUAGAUAGAAGCCUCAGGCCUGAAACCAACAAAAGCCUCAAGAGCCAAGAAAACAGAGGGUGGCCUGAAUUGGACCGAAGGCCUGAGUUGGAUGGAAGUCUCAAGGCUUGAGUUAGAAGUCUUAAGACCUGGGACAGGACACAUGGAAGGCCUAAGAACUGAGACUUGUGACACAAGGCCAACGACCUAAGAUUAGCCCAGGGUUGUAGCUGGAAGACCUACAACCCAAGGAUGGAAGGCCCCUGUCACAAAGCCUACCUAGAUGGAUAGAGGACCCAAGCGAAAAAGGUAUCUCAAGACUAACGGCCGGAAUCUGGAGGCCCAUGACCCAGAACCCAGGAAGGAUAGAAGCUUGAAGACCUGGGGAAAUCCCAAGAUGAGAACCCUAAACCCUACCUCUUUUCUAUUGUUUACACUUCUUACUCUUAGAUAUUUCCAGUUCUCCUGUUUAUCUUUAAGCCUGAUUCUUUUGAGAUGUACUUUUUGAUGUUGCCGGUUACCUUUAGAUUGACAGUAUUAUGCCUGGGCCAGUCUUGAGCCAGCUUUAAAUCACAGCUUUUACCUAUUUGUUAGGCUAUAGUGUUUUGUAAACUUCUGUUUCUAUUCACAUCUUCUCCACUUGAGAGAGACACCAAAAUCCAGUCAGUAUCUAAUCUGGCUUUUGUUAACUUCCCUCAGGAGCAGACAUUCAUAUAGGUGAUACUGUAUUUCAGUCCUUUCUUUUGACCCCAGAAGCCCUAGACUGAGAAGAUAAAAUGGUCAGGUUGUUGGGGAAAAAAAAGUGCCAGGCUCUCUAGAGAAAAAUGUGAAGAGAUGCUCCAGGCCAAUGAGAAGAAUUAGACAAGAAAUACACAGAUGUGCCAGACUUCUGAGAAGCACCUGCCAGCAACAGCUUCCUUCUUUGAGCUUAGGACAUUCUGAGCAUGUGAGACCUGAGGACUGCAAACAGCUAUAAGAGGCU circ
ENSG00000229807:-:X:73826114:73833374 ENSG00000229807 ENST00000650627 - X 73826115 73833374 22 UUUGAGCUUAGGACAUUCUGAG bsj
ENSG00000229807:-:X:73826114:73833374 ENSG00000229807 ENST00000650627 - X 73833365 73833574 210 CUAAUCUUCCCGUGUACUGCCAGGGCUUGUCAUUAGAGGACUUUAGGGAGACCAAGCAGGCUAGAAAGUAGAGACAGGAGAUACCUAUGUCUAAUGCUUCAGUUUAUACUUCCUAGGUUUUUUUCAUUGGGGUUUUUGUAACUCUUUUGGUAUCCUACCGGUGCUUUGGUAGCCUACUGAACCCUGUCUUUCUUCUUAAGGACAUUCUGA ie_up
ENSG00000229807:-:X:73826114:73833374 ENSG00000229807 ENST00000650627 - X 73825915 73826124 210 UUGAGCUUAGGUGAGCAGGAUUCUGGGGUUUGGGAUUUCUAGUGAUGGUUAUGGAAAGGGUGACUGUGCCUGGGACAAAGCGAGGUCCCAAGGGGACAGCCUGAACUCCCUGCUCAUAGUAGUGGCCAAAUAAUUUGGUGGACUGUGCCAACGCUACUCCUGGGUUUAAUACCCAUCUCUAGGCUUAAAGAUGAGAGAACCUGGGACUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 6 267 0.002941176 0.0003883867 2.920828 CUCUCU CUCUCU
CELF2 19 1886 0.008403361 0.0027346479 1.619611 AUGUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 14 1415 0.006302521 0.0020520728 1.618847 GUGUGG,GUGUGU,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBMY1A1 4 489 0.002100840 0.0007101099 1.564852 ACAAGA,CAAGAC ACAAGA,CAAGAC
SSB 11 1260 0.005042017 0.0018274462 1.464172 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM4 28 3065 0.012184874 0.0044432593 1.455401 CCUCUU,CCUUCC,CCUUCU,CUCUUU,CUUCCU,CUUCUU,UCCUUC,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
TARDBP 24 2654 0.010504202 0.0038476365 1.448922 GAAUGA,GAAUGU,GUGUGU,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PTBP1 156 16854 0.065966387 0.0244263326 1.433294 ACUUUC,ACUUUU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUGUG,GGCUCC,GUCUUA,GUCUUU,UACUUU,UAGCUG,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
CSTF2 17 1967 0.007563025 0.0028520334 1.406973 GUGUGU,GUGUUU,GUUUUG,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
QKI 24 2805 0.010504202 0.0040664663 1.369119 AAUCAU,ACACAC,ACUAAC,AUCAUA,AUCUAA,AUCUAC,CACACU,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF4 14 1782 0.006302521 0.0025839306 1.286362 GUGUGG,GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZNF638 13 1773 0.005882353 0.0025708878 1.194127 CGUUCG,GGUUCU,GGUUGU,GUUCGU,GUUGUU,UGUUCU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RC3H1 13 1786 0.005882353 0.0025897275 1.183593 CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
TIA1 67 9206 0.028571429 0.0133428208 1.098509 AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUG,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TUT1 4 678 0.002100840 0.0009840095 1.094222 AAAUAC,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM24 16 2357 0.007142857 0.0034172229 1.063677 AGAGUG,AGUGUG,GAGUGG,GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF1 16 2391 0.007142857 0.0034664959 1.043023 CUGUCU,GUGUGU,GUUUGU,UGUGUG,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPD 1 12 0.09090909 0.000851454 6.738352 UUAGGA AAAAAA,AAUUUA,AGAUAU,AGUAGG,UUAGAG,UUAGGA,UUAGGG
ENOX1 1 26 0.09090909 0.001768405 5.683904 AGGACA AAGACA,AGACAG,AGGACA,AGUACA,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,UAGACA,UGGACA
PCBP2 1 26 0.09090909 0.001768405 5.683904 UUAGGA AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG
PCBP1 1 35 0.09090909 0.002357873 5.268867 UUAGGA AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG
SRSF7 1 128 0.09090909 0.008449044 3.427565 AGGACA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF9 1 134 0.09090909 0.008842023 3.361976 AGGACA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 2 625 0.13636364 0.041000786 1.733736 AGGACA,UAGGAC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
FXR2 5 730 0.014285714 0.0036829907 1.955624 AGACAG,GACAAA,GACAGG,GGACAA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 GCUUAA,GGCUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
QKI 4 904 0.011904762 0.0045596534 1.384543 CUAAUC,CUACUC,CUCAUA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGACAG,AGGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GCCUAC,UAAUAC,UAAUGC,UACUGC,UCCUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AGGAGA,AGUAGU,AUACCU,CCUGCU,GAGCAG,GAUACC,GGAGAU,GUAGUG ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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