ENSG00000133612:+:7:151116792:151134568

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000133612:+:7:151116792:151134568 ENSG00000133612 MSTRG.30937.6 + 7 151116793 151134568 2459 ACUCGUUUGUGAACAGCCAGGAGUGGACGCUGAGCCGCUCCGUACCGGAGCUUAAAGUGGGCAUAGUGGGGAACCUGUCUAGCGGGAAGUCAGCCCUGGUGCACCGCUAUCUGACGGGGACCUAUGUCCAGGAGGAGUCCCCUGAAGGGGGGCGGUUUAAGAAGGAGAUUGUGGUGGAUGGCCAGAGUUACCUGCUGCUGAUCCGAGAUGAAGGAGGCCCCCCUGAGCUCCAGUUUGCUGCCUGGGUGGAUGCAGUGGUGUUUGUGUUCAGCCUGGAGGAUGAAAUCAGUUUCCAGACGGUGUACAACUACUUCCUGCGUCUCUGCAGCUUCCGCAACGCCAGCGAGGUGCCCAUGGUGCUUGUGGGCACGCAGGAUGCCAUCAGCGCUGCGAAUCCCCGGGUUAUCGACGACAGCAGAGCCCGCAAGCUCUCCACAGAUCUGAAGCGGUGCACCUACUAUGAGACGUGCGCGACCUACGGGCUCAAUGUGGAGCGUGUCUUCCAGGACGUGGCCCAGAAGGUAGUGGCCUUGCGAAAGAAGCAGCAACUGGCCAUCGGGCCCUGCAAGUCACUGCCCAACUCGCCCAGCCACUCGGCCGUGUCCGCCGCCUCCAUCCCGGCCGUGCACAUCAACCAGGCCACGAAUGGCGGCGGCAGCGCCUUCAGCGACUACUCGUCCUCAGUCCCCUCCACCCCCAGCAUCAGCCAGCGGGAGCUGCGCAUCGAGACCAUCGCUGCCUCCUCCACCCCCACACCCAUCCGAAAGCAGUCCAAGCGGCGCUCCAACAUCUUCACGCUAAUGAACCGGCGGCCGGAAGGCUGUUUGCCCAAGGCGACACAGAGGGUUAGCUGGCCCAGCUAGAGUCAGAGCCCAGGCCUCCCCGUCGCCUUCCGGCUCUUUUUCCGUUACCCCACUGCCGAGGGGAAAAUUCAUGCUUUCCACCCACCGCUGUGAUUGGUUUAACAAAGGCUUAGCCAUCUUUUCCUGGGCUUCACCACGCUGCCUCGUUCCUCCCUCUCAGAUAUGUGCCACUGUUUCCAACUUUUCAUCAACAAAAAGGCCUUUCCAACUCCUUCCAAAUUAGAAGACCAGUUGGUGACACACAGCACCUCUGGACAUGCCCCCUGUGCGGGGCCGGAGGCGGGCCGGGCCCUGGGACUGCUCUCAGAUGAGAAGCGGCCGCCGAGCUCCCCACUCCAGAGACCCACGGGAACCUUUGUAACUAACCCCACCCCCAGGGAAGGCUAGGAGCGCCGGAGCCCGCGCUGGGGGCUGCCGGGGACCAGGCCCGGCCGGACGCUGCAGGCUCGCUGCAUGGAGAAGAAGGCAGCUCGGCCCCACGCCCGGCGCUGGCCAGCGCGACGAGGCCCAGAGGGGCGGGGGAGUCCAAGCCCGCCCGGCCCGGCUGCUCCUGGGGGGCGCUUUCCUGCCCCUCCCCUCCUCUGCUCCUUCCUGCAUGGACCUCUGCCGUUCCUGCUCCUGCUCCGGAAGCCGCCGCCGCCGCCGCGCUUGCCUUGCCCCCUCUUUUUGGCCUCCCCCUAUUUCCUAGGAUCCGCAUUCGGGUGGACUCUGCCCCAGGAGCUUGACAGGGUGCAGGGCCUCUUCUGGCCUCUCUCCUCUCUCUGUCCAUCCACUGUGCCCCUUGGGCCACGCCGACGCGCUCGGUGCCACGUGCCGUGUGGUGUCUGUGCCGCAGACGGGCCAUCUGCCCGCUCACUUGUGGACUUUGCGCUCCCGGUUGUCGCGCCCUGUGCUCCCGACCAGCAGCCCCACCGUCCACCUCCUCGCCCCCGCUUCUCUUACGCCCCCGCCCCGGGCGUGCUCCUCGCGCCCUCGGCCUCUCUGUCCUUGCUCUUUUGUAAGGGGCGGGCCCGGCUCAGUGACCUGUGCUGCUCUGUAUGGUGCCGUGUGUAAGAAUAAACCCGUUGGAAUACUCGUGGUCUCAGUUCCUUCCCGUCCCGCCGCCCCGGCCCGACCCACUGCUAGGGCUGCCCAGGAGGAGGGAGGCAGGAGGGAGGCCGGGAAGUCCAGGUGGGCAGCUCUCGGCAGACCCUGGGCCUCUUUAACACGCCUCUUGUUUUCUCUUCCAGUCUCGGAAGGGUGCUGACCUGGACCGGGAGAAGAAGGCUGCCGAGUGCAAGGUGGACAGCAUCGGGAGCGGCCGCGCCAUCCCCAUCAAGCAGGGGAUCCUGCUAAAGCGGAGCGGCAAGUCCCUGAACAAGGAGUGGAAGAAGAAGUAUGUGACGCUCUGUGACAACGGGCUGCUCACCUAUCACCCCAGCCUGCAUGAUUACAUGCAGAACAUCCACGGCAAGGAGAUUGACCUGCUGCGGACAACGGUGAAAGUGCCAGGGAAGCGCCUGCCCCGAGCCACACCUGCCACAGCCCCGGGCACCAGCCCCCGUGCCAACGGGCUGUCCGUGGAGCGGAGUAACACACAGCUGGGUGGGGGCACAGACUCGUUUGUGAACAGCCAGGAGUGGACGCUGAGCCGCUCCGUACCGGAG circ
ENSG00000133612:+:7:151116792:151134568 ENSG00000133612 MSTRG.30937.6 + 7 151116793 151134568 22 UGGGGGCACAGACUCGUUUGUG bsj
ENSG00000133612:+:7:151116792:151134568 ENSG00000133612 MSTRG.30937.6 + 7 151116593 151116802 210 CAUCCUUACUCUGCUUCACUCAAGAAGAACCUUCCCACUGCCUCCUGGGGAACUAGGGGUGAGGGUUGGGGGUCCCGUGGAGGAAGCUGCUGUCCUCUGGCCUGGGCUUGGGGAGGGCAUCAUAGGUGACACAGGCAGCAGUGGUUGGGACAGGUGUGUGUGCCACCCUGGCCCUGACGGGGCGGCUCUGUCUUCCGCAGACUCGUUUGU ie_up
ENSG00000133612:+:7:151116792:151134568 ENSG00000133612 MSTRG.30937.6 + 7 151134559 151134768 210 GGGGGCACAGGUGAGGCGGCUGCUGAGGUGGGGGCCUGGGGGGUGGCUGCCUUGGAGCCAAGGCAAGCAGGCAUUCUGGGCUUGGCUGCUUCUCAGCCUGGGCACAGGGUGCUGGCCAGCAUCACACUUCAAGGUCAUCUCAGCCAAAGACAUGUGCCCUAACGCAGCCCUCGUGGAGUUAGUUGAGGUGACAGCAAAUGCCUAGACGAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 3 199 0.001626678 0.0002898408 2.488596 CCGCCC CCGCCC
PTBP2 4 267 0.002033347 0.0003883867 2.388291 CUCUCU CUCUCU
RBM25 4 268 0.002033347 0.0003898359 2.382918 AUCGGG,CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
RBM8A 10 611 0.004473363 0.0008869128 2.334496 ACGCGC,CGCGCC,CGCGCU,GUGCGC,UGCGCG,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ZC3H10 15 1053 0.006506710 0.0015274610 2.090793 CAGCGA,CAGCGC,CCAGCG,GAGCGC,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
PPRC1 9 780 0.004066694 0.0011318283 1.845201 CCGCGC,CGCGCC,CGGCGC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
G3BP1 148 14282 0.060593737 0.0206989801 1.549609 ACACGC,ACCCAC,ACCCAU,ACCCCC,ACCGGC,ACGCAG,ACGCCC,ACGCCG,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACGCA,CACGCC,CAGGCC,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUCC,CCCUCG,CCGCAG,CCGCCC,CCGCCG,CCGGCC,CCUACG,CCUAGG,CCUCGG,CGGCAG,CGGCCC,CGGCCG,CUCGGC,UACGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
SRSF11 6 688 0.002846686 0.0009985015 1.511447 AAGAAG AAGAAG
IFIH1 8 904 0.003660024 0.0013115296 1.480603 GCCGCG,GGCCCU,GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBFOX2 3 452 0.001626678 0.0006564894 1.309085 UGCAUG UGACUG,UGCAUG
RBM14 3 478 0.001626678 0.0006941687 1.228570 CGCGCC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBM42 2 407 0.001220008 0.0005912752 1.044989 AACUAA,AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
MBNL1 97 13372 0.039853599 0.0193802045 1.040126 ACGCUA,ACGCUC,ACGCUG,AUGCCA,AUGCCC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GUCUCG,GUGCUC,GUGCUG,GUGCUU,UCGCUG,UCUGCU,UGCUGC,UGCUUU,UUGCCC,UUGCCU,UUGCUC,UUGCUG,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SF1 2 24 0.13636364 0.001637412 6.379898 ACAGAC,CACAGA ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
SRSF5 1 44 0.09090909 0.002947341 4.946939 CACAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF1 1 625 0.09090909 0.041000786 1.148773 CACAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 56 0.004761905 0.0002871826 4.051499 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPA3 3 349 0.009523810 0.0017634019 2.433177 CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 3 351 0.009523810 0.0017734784 2.424957 AAAGAC,AAGACA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
FXR2 7 730 0.019047619 0.0036829907 2.370661 AGACGA,GACAGG,GACGAG,GACGGG,GGACAG,UGACAG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
SRSF4 5 558 0.014285714 0.0028164047 2.342647 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
EIF4B 1 226 0.004761905 0.0011436921 2.057840 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF4 5 776 0.014285714 0.0039147521 1.867580 GGUGUG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGGAA,GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CELF1 6 1097 0.016666667 0.0055320435 1.591081 CUGUCU,GUGUGU,GUUUGU,UGUGUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGCC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGGAAG,AGGUGG,AGUUAG,UAGGUG,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
SRSF5 8 1578 0.021428571 0.0079554615 1.429518 AAGAAG,AGAAGA,AGGAAG,CCGCAG,CGCAGA,CGCAGC,GAAGAA,GAGGAA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM24 4 888 0.011904762 0.0044790407 1.410277 GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
LIN28A 4 900 0.011904762 0.0045395002 1.390933 GGAGGA,GGAGGG,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAGG,GUGGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SRSF6 23 5069 0.057142857 0.0255441354 1.161581 AAGAAG,AGAAGA,AGGAAG,CACAGG,CAUCCU,CCACUG,CCUCUG,CCUGGC,CUCUGG,CUUCAC,CUUCUC,GAAGAA,GAGGAA,GCAGCA,UCACAC,UCACUC,UCCUGG,UCUCAG,UUACUC,UUCUGG AACCUG,AAGAAG,ACCGGG,ACCGUC,ACCUGG,AGAAGA,AGCACC,AGCGGA,AGGAAG,AUCAAC,AUCCUG,AUCGUA,CAACCU,CACACG,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CAUCCU,CCACAC,CCACAG,CCACUC,CCACUG,CCCGGC,CCUCAC,CCUCAG,CCUCUC,CCUCUG,CCUGGC,CGCGUC,CUACAC,CUACAG,CUACUC,CUACUG,CUCACG,CUCAGG,CUCAUC,CUCUCG,CUCUGG,CUUCAC,CUUCAG,CUUCUC,CUUCUG,GAAGAA,GACGUC,GAGGAA,GAUCAA,GCACCU,GCAGCA,GCCGGA,GCCGUC,GCUCAU,GGAAGA,UACACG,UACAGG,UACGUC,UACUCG,UACUGG,UCAACC,UCACAC,UCACAG,UCACUC,UCACUG,UCAUCC,UCCGGA,UCCUGG,UCUCAC,UCUCAG,UCUCUC,UCUCUG,UGCGGA,UGCGGC,UGCGUA,UGCGUC,UGCGUG,UGUGGA,UUACAC,UUACAG,UUACUC,UUACUG,UUCACG,UUCAGG,UUCUCG,UUCUGG,UUUCAC,UUUCAG,UUUCUC,UUUCUG
HNRNPH1 15 3406 0.038095238 0.0171654575 1.150102 AGGAAG,CUGGGG,GAGGAA,GGAGGA,GGAGGG,GGGAGG,GGGGAA,GGGGAG,GGGGGC,GGGGGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
MBNL1 14 3258 0.035714286 0.0164197904 1.121066 CUGCCU,CUGCUG,CUGCUU,GCUGCU,GUGCUG,UCUGCU,UGCUGU,UGCUUC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCAUA,CACACU,CUAACG AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPH2 13 3198 0.033333333 0.0161174929 1.048338 CUGGGG,GGAGGA,GGAGGG,GGGAGG,GGGGAA,GGGGAG,GGGGGC,GGGGGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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