ENSG00000168763:+:2:96825057:96829134

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000168763:+:2:96825057:96829134 ENSG00000168763 MSTRG.18891.3 + 2 96825058 96829134 834 GGAAGUCCCACCUGGCCAUCGUGCAGAAGGUGAACAACGAGGGUGAAGGCGACCCCUUCUACGAGGUCCUGGGCCUGGUCACCCUGGAGGACGUGAUCGAGGAGAUCAUCAGGUCCGAGAUCCUGGACGAGUCUGAAGACUACCGAGACACCGUGGUGAAGAGGAAGCCUGCUUCUCUGAUGGCCCCUCUGAAGCGGAAGGAGGAGUUCUCCUUGUUCAAGGUGUCUGAUGAUGAAUAUAAAGUAACAAUCUCGCCUCAGCUGCUCUUGGCCACCCAGCGCUUCCUGUCCCGAGAAGUGGAUGUAUUCAGCCCGCUGCGCAUCUCUGAGAAGGUCCUGCUGCACCUGUUGAAGCAUCCCAGUGUCAACCAGGAAGUGAGGUUUGACGAGAGCAACCGGCUGGCCACACACCACUACCUGUACCAGCGCAGCCAGCCGGUGGAUUACUUCAUUCUCAUCCUGCAGGGCAGGGUUGAAGUGGAGAUCGGGAAAGAGGGUCUGAAGUUUGAGAAUGGGGCCUUCACGUACUAUGGAGUGUCGGCCCUAACUGUGCCAUCCUCGGUUCACCAGUCCCCGGUGUCCUCGCUCCAGCCCAUCCGCCAUGACCUGCAGCCCGACCCAGGUGACGGCACGCAUUCAUCUGCGUAUUGUCCCGACUACACCGUGAGGGCGCUCUCUGAUCUGCAGCUCAUCAAGGUUACGCGACUGCAGUACCUCAAUGCACUCCUGGCUACCCGAGCCCAGAACCUGCCACAGUCCCCUGAGAACACCGACCUGCAGGUUAUUCCAGGCAGCCAGACCAGGCUCCUUGGUGAGAAGACCACCACAGCGGCAGGGAAGUCCCACCUGGCCAUCGUGCAGAAGGUGAACAACGAGGGUGAAGGC circ
ENSG00000168763:+:2:96825057:96829134 ENSG00000168763 MSTRG.18891.3 + 2 96825058 96829134 22 CACAGCGGCAGGGAAGUCCCAC bsj
ENSG00000168763:+:2:96825057:96829134 ENSG00000168763 MSTRG.18891.3 + 2 96824858 96825067 210 ACCUGUGUGAAAAUAAGGCCAGUUCUCAUAAUCACGCUGGGAGUCUUAAGUAAAAACCUAGAAAAGAGUGUGGCUCUGUGCCUGGCACGUUGUAGGAGCAUGAACGUUAGCCGUGUCCUUUUGGUGGGCCUAUACCAGGGGAGAUGAAUCAAACUGGGGGGGGCCCAGCAAGCUGUUCCAUGAGUGUCCUCCCCCCACAGGGAAGUCCCA ie_up
ENSG00000168763:+:2:96825057:96829134 ENSG00000168763 MSTRG.18891.3 + 2 96829125 96829334 210 ACAGCGGCAGGUGAGUGCCAAGUGGUACAUCGUGCAUGGUGUCUGGACCUGAGGGCCGUGAGCUCACACACACAGACUUGCACUCUCGCCGCCCCCCCACCCUCUGUCUUUUUUCUCUCUUUUCUCCCCAUCCUUUUCCCUUCUUUAUAUAUAUAUAUCUAUAUAUAAAUAAUUUUUUUUUUUUUUGAGAUGGAGUCUUACUCUGUUGCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 1 267 0.002398082 0.0003883867 2.626315 CUCUCU CUCUCU
RBM25 1 268 0.002398082 0.0003898359 2.620942 AUCGGG AUCGGG,CGGGCA,UCGGGC
NXF1 1 286 0.002398082 0.0004159215 2.527497 AACCUG AACCUG
ZC3H10 4 1053 0.005995204 0.0015274610 1.972673 CAGCGC,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
AGO1 1 548 0.002398082 0.0007956130 1.591742 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRNP70 3 1237 0.004796163 0.0017941145 1.418609 AUCAAG,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SNRPB2 2 991 0.003597122 0.0014376103 1.323171 GUAUUG,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PPRC1 1 780 0.002398082 0.0011318283 1.083226 GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPLL 8 3534 0.010791367 0.0051229360 1.074835 ACACAC,ACACCA,ACCACA,ACUGCA,CACACA,CACACC,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ZRANB2 7 3173 0.009592326 0.0045997733 1.060318 AGGGAA,AGGUUA,AGGUUU,GAGGUU,GGGUGA,GUGGUG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBMX 11 4925 0.014388489 0.0071387787 1.011166 AAGUAA,AGAAGG,AGGAAG,AGUAAC,AUCCCA,GAAGGA,GGAAGG,GUAACA,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP2 1 14 0.09090909 0.0009824469 6.531901 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA
HNRNPH3 2 61 0.13636364 0.0040607807 5.069558 AGGGAA,GGGAAG AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
ZRANB2 1 45 0.09090909 0.0030128373 4.915230 AGGGAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
HNRNPH2 2 80 0.13636364 0.0053052135 4.683904 AGGGAA,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
RBM5 1 56 0.09090909 0.0037332984 4.605902 AGGGAA AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPF 2 90 0.13636364 0.0059601782 4.515960 AGGGAA,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 2 90 0.13636364 0.0059601782 4.515960 AGGGAA,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPA1 2 119 0.13636364 0.0078595756 4.116864 CAGGGA,GGCAGG AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF2 1 479 0.09090909 0.0314383023 1.531901 GCAGGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.0410007860 1.148773 GCAGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 31 0.004761905 0.0001612253 4.884389 CCGCCC CCGCCC
AKAP1 11 221 0.028571429 0.0011185006 4.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 6 217 0.016666667 0.0010983474 3.923559 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 13 562 0.033333333 0.0028365578 3.554752 AUAUAU,CUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
CPEB4 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
HNRNPU 16 1136 0.040476190 0.0057285369 2.820835 CCCCCC,GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 AGCAUG,GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
PUM2 9 764 0.023809524 0.0038542926 2.627001 GUACAU,UAAAUA,UACAUC,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
U2AF2 12 1071 0.030952381 0.0054010480 2.518739 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
NOVA1 16 1428 0.040476190 0.0071997179 2.491061 CCCCCC,GGGGGG,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RALY 12 1117 0.030952381 0.0056328094 2.458124 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBM24 9 888 0.023809524 0.0044790407 2.410277 AGAGUG,AGUGUG,GAGUGU,GUGUGA,GUGUGG,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 UUUUUU AAAAAA,UUUUUU
KHDRBS2 10 1051 0.026190476 0.0053002821 2.304901 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
NOVA2 14 1434 0.035714286 0.0072299476 2.304444 CCUAGA,GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPCL1 13 1381 0.033333333 0.0069629182 2.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 14 1487 0.035714286 0.0074969770 2.252120 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
FUS 15 1711 0.038095238 0.0086255542 2.142922 GGGGGG,UGGUGG,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPC 17 2006 0.042857143 0.0101118501 2.083489 AUUUUU,CUUUUU,GGGGGG,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPK 27 3244 0.066666667 0.0163492543 2.027741 CCAUCC,CCCCAC,CCCCAU,CCCCCA,CCCCCC,GCCCAG,GCCCCC,GGGGGG,UCCCCA,UCCCCC,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AGGAGC,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
KHDRBS3 13 1646 0.033333333 0.0082980653 2.006119 AAAUAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPLL 5 748 0.014285714 0.0037736800 1.920529 ACACAC,CACACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RC3H1 4 631 0.011904762 0.0031841999 1.902536 CCCUUC,CCUUCU,UCCCUU,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 UAAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PCBP2 23 4164 0.057142857 0.0209844821 1.445250 CCCCCA,CCCCCC,CCCUUC,CCUCCC,CUCCCC,GGGGGG,UCCCCA,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
PCBP1 27 4891 0.066666667 0.0246473196 1.435535 ACCCUC,CACCCU,CCACCC,CCAUCC,CCCACC,CCCCAC,CCCCCC,CCCUCU,CCCUUC,CCUCCC,GGGGGG,UCCCCA,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAAUAA,ACACAC,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
QKI 4 904 0.011904762 0.0045596534 1.384543 ACACAC,CUCAUA,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PTBP1 43 8003 0.104761905 0.0403264813 1.377315 AGCUGU,AUUUUU,CCCCCC,CCUUUU,CUCCCC,CUCUCU,CUCUUU,CUUCUU,CUUUUC,CUUUUU,GGGGGG,GUCUUA,GUCUUU,UCCCCC,UCUCUC,UCUCUU,UCUUUU,UUCUCU,UUCUUU,UUUCCC,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AGUAAA,GGGGGG,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,ACACAC,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PUM1 10 2172 0.026190476 0.0109482064 1.258348 GUACAU,UAAAUA,UACAUC,UAUAUA,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
G3BP1 16 3431 0.040476190 0.0172914148 1.227018 CACAGG,CCACAG,CCACCC,CCAUCC,CCCACA,CCCACC,CCCAUC,CCCCAC,CCCCCA,CCCCCC,CCGCCC,CGGCAG ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 CCCCCC,UUUGGU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
TIA1 23 5140 0.057142857 0.0259018541 1.141518 AUUUUU,CUUUUC,CUUUUG,CUUUUU,UCCUUU,UUCUCC,UUUUCU,UUUUGG,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAA,AUCAAA,AUGAAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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