circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000002822:-:7:1980452:2149238
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000002822:-:7:1980452:2149238 | ENSG00000002822 | ENST00000399654 | - | 7 | 1980453 | 2149238 | 519 | GACUCCAGAAGACCUUUCCAGAUUCGUGGUUGAGCUGCAGCAGAGGGAGCUUGCCUUGAAGGACAAGAACAGCGCCGUCACCAGCAGCGCCCGGGGGCUGGAGAAGGCCAGGCAGCAGCUGCAGGAGGAGCUCCGGCAGGUCAGCGGCCAGCUGUUGGAGGAGAGGAAGAAGCGCGAGACCCACGAGGCGCUGGCCCGGAGGCUCCAGAAACGGGUCCUGCUGCUCACCAAGGAGCGGGACGGUAUGCGGGCCAUCCUGGGGUCCUACGACAGCGAGCUGACCCCGGCCGAGUACUCACCCCAGCUGACGCGGCGCAUGCGGGAGGCUGAGGAUAUGGUGCAGAAGGUGCACAGCCACAGCGCCGAGAUGGAGGCUCAGCUGUCGCAGGCCCUGGAGGAGCUGGGAGGCCAGAAACAAAGAGCAGACAUGCUGGAGAUGGAGCUGAAGAUGCUGAAGUCUCAGUCCAGCUCUGCCGAACAGAGCUUCCUGUUCUCCAGGGAGGAGGCGGACACGCUCAGGACUCCAGAAGACCUUUCCAGAUUCGUGGUUGAGCUGCAGCAGAGGGAGC | circ |
| ENSG00000002822:-:7:1980452:2149238 | ENSG00000002822 | ENST00000399654 | - | 7 | 1980453 | 2149238 | 22 | GACACGCUCAGGACUCCAGAAG | bsj |
| ENSG00000002822:-:7:1980452:2149238 | ENSG00000002822 | ENST00000399654 | - | 7 | 2149229 | 2149438 | 210 | GUUGCAUAGGGGUGGGGGCUGUGGUUGACCCCAGGCUGUAGUGCGUGCAUGCUGCCCUGGACCUGGGUCCACAGAGUUCACACAUCCUGGGUCCCAGAGCAUCAGCUACAGAGGUUGCUUUUGGCCUUCUGUUUUGUGUGCAGAAUCAGGUUUACUUCUCGGGGACAGCUGGAACUGAGUGUGCCUUGUUUAUCCUGCAGGACUCCAGAA | ie_up |
| ENSG00000002822:-:7:1980452:2149238 | ENSG00000002822 | ENST00000399654 | - | 7 | 1980253 | 1980462 | 210 | ACACGCUCAGGUACGUCCCCCAGAGAGGAGGCGGACACGCCCAGGUGUGUCCCCCAGAGAGGAGGCGGAUACGCCCAGGUGUGUCCUGCGGGGGAGGAGGCAGAUACGCCCAGGUGUGUCCUGUGGGGGAGGAGGCGGAUACGCCCAGGUGUGUCCCACGGAGGAAGAGGCGGACGUGCUCAGGUGUGUCCUGUGGGGUGGGGGGAGGUG | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ZC3H10 | 6 | 1053 | 0.013487476 | 0.0015274610 | 3.142413 | CAGCGA,CAGCGC,GCAGCG,GGAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| FXR1 | 1 | 411 | 0.003853565 | 0.0005970720 | 2.690217 | ACGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| RBM14 | 1 | 478 | 0.003853565 | 0.0006941687 | 2.472835 | CGCGGC | CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG |
| RBMY1A1 | 1 | 489 | 0.003853565 | 0.0007101099 | 2.440079 | ACAAGA | ACAAGA,CAAGAC |
| HNRNPA3 | 6 | 2140 | 0.013487476 | 0.0031027457 | 2.120003 | AAGGAG,AGGAGC,CAAGGA,CCAAGG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| LIN28A | 13 | 4315 | 0.026974952 | 0.0062547643 | 2.108593 | AGGAGA,CGGAGG,GGAGAA,GGAGAU,GGAGGA,UGGAGA,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| SRSF11 | 1 | 688 | 0.003853565 | 0.0009985015 | 1.948357 | AAGAAG | AAGAAG |
| SAMD4A | 10 | 3992 | 0.021194605 | 0.0057866714 | 1.872891 | CGGGAC,CGGGCC,CGGGUC,CUGGCC,GCGGGA,GCGGGC,GCUGGA,GCUGGC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| NONO | 3 | 1498 | 0.007707129 | 0.0021723567 | 1.826933 | AGAGGA,GAGAGG,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| PPRC1 | 1 | 780 | 0.003853565 | 0.0011318283 | 1.767538 | CGGCGC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| IFIH1 | 1 | 904 | 0.003853565 | 0.0013115296 | 1.554943 | GGCCCU | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| HNRNPM | 1 | 999 | 0.003853565 | 0.0014492040 | 1.410933 | GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| SRSF4 | 6 | 3740 | 0.013487476 | 0.0054214720 | 1.314864 | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| RBFOX1 | 1 | 1077 | 0.003853565 | 0.0015622419 | 1.302576 | GCAUGC | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| HNRNPH1 | 18 | 10717 | 0.036608863 | 0.0155325680 | 1.236897 | AAGGUG,AGGAAG,CAGGAC,CGGGGG,CUGGGG,GAAGGU,GAGGAA,GGAGGA,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| SRSF9 | 34 | 20254 | 0.067437380 | 0.0293536261 | 1.200010 | AGGACA,AGGAGA,AGGAGC,GAAGGA,GAAGGC,GAUGGA,GGACAA,GGAGAA,GGAGAG,GGAGCG,GGAGGA,GGAGGC,GGGAGC,GGGAGG,GGUGCA,UGAAGG,UGGAGC,UGGAGG,UGGUGC | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| HNRNPF | 17 | 10561 | 0.034682081 | 0.0153064921 | 1.180047 | AAGGUG,AGGAAG,CGGGGG,CUGGGG,GAAGGU,GAGGAA,GGAGGA,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| EIF4B | 1 | 1179 | 0.003853565 | 0.0017100607 | 1.172146 | GUUGGA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| ZNF638 | 2 | 1773 | 0.005780347 | 0.0025708878 | 1.168889 | UGUUCU,UGUUGG | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| HNRNPH3 | 12 | 7688 | 0.025048170 | 0.0111429292 | 1.168577 | AAGGUG,CGGGGG,GGAGGA,GGGAGG,GGGCUG,GGGGCU,GGGGGC | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| HNRNPAB | 2 | 1782 | 0.005780347 | 0.0025839306 | 1.161589 | ACAAAG,CAAAGA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| SRSF1 | 166 | 99563 | 0.321772640 | 0.1442885423 | 1.157085 | AAAGAG,AACAGC,AAGAAC,AAGAAG,AAGACC,AAGAGC,AAGGAC,AAGGAG,AAGGUG,ACAGAG,ACAGCG,ACGCUC,AGAAGA,AGAAGG,AGAGCA,AGAGGA,AGAGGG,AGAUGG,AGCGAG,AGCGGG,AGGAAG,AGGACA,AGGACU,AGGAGA,AGGAGC,AGGAGG,AUGGAG,CAAGGA,CACAGC,CACGCU,CAGACA,CAGAGC,CAGAGG,CAGCGG,CCAAGG,CCACAG,CCACGA,CCAGCA,CCAGGG,CCCACG,CCCAGC,CCCCGG,CCCGGA,CCCGGC,CCCGGG,CCCUGG,CCGGAG,CCGGCA,CCGGCC,CCGGGG,CCUGGA,CCUGGG,CGACAG,CGAGGC,CGCAGG,CGCCCG,CGCCGA,CGCCGU,CGCGAG,CGCGGC,CGCUCA,CGCUGG,CGGACA,CGGAGG,CGGCAG,CGGCCA,CGGCCG,CGGCGC,CGGGCC,CGGGGG,CUACGA,CUCAGG,CUCCGG,GAACAG,GAAGAA,GAAGAC,GAAGAU,GAAGGA,GAAGGC,GAAGGU,GACCCA,GACGCG,GAGAAG,GAGCAG,GAGCGG,GAGGAA,GAGGAG,GAGGAU,GAGGGA,GAUGCU,GAUGGA,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGU,GCCCGG,GCGAGC,GCGCCC,GCGCCG,GCGCGA,GCGGAC,GCGGCG,GCGGGA,GCUCCA,GCUCCG,GCUGCA,GCUGGA,GCUGGG,GGAAGA,GGACAA,GGACGG,GGAGAA,GGAGAU,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAUAU,GGCCCG,GGCCGA,GGCGCA,GGCGGA,GGGACG,GGGCCA,GGUGCA,UGAAGA,UGAAGG,UGGAGA,UGGAGC,UGGAGG,UGGUGC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGA,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
| HNRNPH2 | 15 | 9711 | 0.030828516 | 0.0140746688 | 1.131164 | AAGGUG,CAGGAC,CGGGGG,CUGGGG,GGAGGA,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| PABPN1 | 1 | 1222 | 0.003853565 | 0.0017723764 | 1.120509 | AGAAGA | AAAAGA,AGAAGA |
| SNRPA | 11 | 7380 | 0.023121387 | 0.0106965744 | 1.112079 | AGGAGA,AUGCUG,CCUGCU,GAGCAG,GGAGAU,GGUAUG,GUAUGC,UCCUGC,UGCACA,UUCCUG | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| SSB | 1 | 1260 | 0.003853565 | 0.0018274462 | 1.076365 | GCUGUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| SRSF5 | 13 | 8869 | 0.026974952 | 0.0128544391 | 1.069354 | AACAGC,AAGAAG,AGAAGA,AGGAAG,CACAGC,CGCAGG,CGCGGC,GAAGAA,GAGGAA,GGAAGA,UGCAGA,UGCAGC | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SRSF6 | 1 | 68 | 0.09090909 | 0.004519256 | 4.330267 | CUCAGG | AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.005305214 | 4.098942 | CAGGAC | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | CAGGAC | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| SRSF1 | 2 | 625 | 0.13636364 | 0.041000786 | 1.733736 | AGGACU,CUCAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| IFIH1 | 2 | 146 | 0.007142857 | 0.0007406288 | 3.269679 | GCGGAU | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| NONO | 5 | 364 | 0.014285714 | 0.0018389762 | 2.957598 | AGAGGA,GAGAGG,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| RBFOX2 | 1 | 124 | 0.004761905 | 0.0006297864 | 2.918604 | UGCAUG | UGACUG,UGCAUG |
| CELF4 | 11 | 776 | 0.028571429 | 0.0039147521 | 2.867580 | GGUGUG,GUGUGU,UGUGUG | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| RBM24 | 9 | 888 | 0.023809524 | 0.0044790407 | 2.410277 | AGUGUG,GAGUGU,GUGUGU,UGAGUG,UGUGUG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| HNRNPA1L2 | 1 | 188 | 0.004761905 | 0.0009522370 | 2.322146 | AUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| CELF5 | 6 | 669 | 0.016666667 | 0.0033756550 | 2.303726 | GUGUGU,UGUGUG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| RBFOX1 | 2 | 287 | 0.007142857 | 0.0014510278 | 2.299426 | GCAUGC,UGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| SRP14 | 1 | 218 | 0.004761905 | 0.0011033857 | 2.109602 | CUGUAG | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| CELF2 | 7 | 881 | 0.019047619 | 0.0044437727 | 2.099754 | GUGUGU,UGUGUG,UUGUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| HNRNPM | 1 | 222 | 0.004761905 | 0.0011235389 | 2.083489 | GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| CSTF2 | 8 | 1022 | 0.021428571 | 0.0051541717 | 2.055723 | GUGUGU,GUUUUG,UGUGUG,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| TUT1 | 1 | 230 | 0.004761905 | 0.0011638452 | 2.032640 | AGAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| G3BP1 | 28 | 3431 | 0.069047619 | 0.0172914148 | 1.997536 | ACACGC,ACGCCC,AGGCAG,AUACGC,CACGCC,CAUAGG,CCACAG,CCAGGC,CCCACG,CCCAGG,CCCCAG,CCCCCA,UACGCC | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
| HNRNPH2 | 24 | 3198 | 0.059523810 | 0.0161174929 | 1.884840 | CAGGAC,CGGGGG,GGAGGA,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,UGGGGG,UGGGGU,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| TARDBP | 7 | 1034 | 0.019047619 | 0.0052146312 | 1.868974 | GUGUGU,GUUUUG,UGUGUG | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| CELF6 | 8 | 1196 | 0.021428571 | 0.0060308343 | 1.829106 | GUGGGG,UGUGGG,UGUGGU,UGUGUG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| RBM3 | 3 | 541 | 0.009523810 | 0.0027307537 | 1.802240 | GAUACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| CELF1 | 7 | 1097 | 0.019047619 | 0.0055320435 | 1.783726 | GUGUGU,UGUGUG,UUGUGU | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| YTHDC1 | 8 | 1254 | 0.021428571 | 0.0063230552 | 1.760842 | GCAUGC,GCGUGC,GGAUAC,UAGUGC,UCCUGC,UGCUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| SRSF4 | 3 | 558 | 0.009523810 | 0.0028164047 | 1.757684 | AGGAAG,GAGGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| HNRNPH1 | 23 | 3406 | 0.057142857 | 0.0171654575 | 1.735065 | AGGAAG,CAGGAC,CGGGGG,GAGGAA,GGAGGA,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGGGGG,UGGGGU,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| SRSF5 | 10 | 1578 | 0.026190476 | 0.0079554615 | 1.719025 | AGGAAG,CACAGA,CACAUC,CACGGA,GAGGAA,GGAAGA,UACAGA,UACGUC,UGCAGA,UGCAUA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| HNRNPH3 | 16 | 2496 | 0.040476190 | 0.0125806127 | 1.685871 | CGGGGG,GGAGGA,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGUGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| RC3H1 | 3 | 631 | 0.009523810 | 0.0031841999 | 1.580608 | CCUUCU,CUUCUG,UUCUGU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| MSI1 | 5 | 961 | 0.014285714 | 0.0048468360 | 1.559458 | AGGAAG,AGGAGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| TRA2A | 6 | 1133 | 0.016666667 | 0.0057134220 | 1.544539 | AAGAGG,AGAGGA,AGGAAG,GAAGAG,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| HNRNPF | 19 | 3360 | 0.047619048 | 0.0169336961 | 1.491642 | AGGAAG,CGGGGG,GAGGAA,GGAGGA,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGGGGU,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| SSB | 2 | 505 | 0.007142857 | 0.0025493753 | 1.486358 | CUGUUU,UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | UGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| LIN28A | 4 | 900 | 0.011904762 | 0.0045395002 | 1.390933 | CGGAGG,GGAGGA | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| ESRP2 | 3 | 731 | 0.009523810 | 0.0036880290 | 1.368689 | GGGGAG | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| SAMD4A | 3 | 790 | 0.009523810 | 0.0039852882 | 1.256855 | CUGGAA,CUGGAC,GCUGGA | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| SRSF1 | 99 | 20925 | 0.238095238 | 0.1054312777 | 1.175236 | AAGAGG,ACAGAG,ACGCUC,ACUGAG,AGAGCA,AGAGGA,AGAGGU,AGGAAG,AGGACU,AGGAGG,CACAGA,CACGCU,CACGGA,CAGAGA,CAGAGC,CAGAGG,CCACAG,CCACGG,CCCACG,CCCAGG,CCCCCA,CCCUGG,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGCCCA,CGCUCA,CGGACA,CGGACG,CGGAGG,CGGGGA,CGGGGG,CGUGCA,CUCAGG,CUGAGU,GAAGAG,GAGGAA,GAGGAG,GAGGCA,GAUACG,GCAGGA,GCGGAC,GCGGGG,GCUGGA,GGAAGA,GGACAG,GGACGU,GGAGGA,GGAGGC,GGAGGU,GGAUAC,GGCAGA,GGCGGA,GGGGAC,GGGGAG,GGGGGA,GGGGGG,GGUCCA,GGUGGG,UCAGGU | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
| SRSF10 | 12 | 2937 | 0.030952381 | 0.0148024990 | 1.064210 | AAGAGG,AGAGAG,AGAGGA,GAGAGG,GAGGAA,GAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
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- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.