ENSG00000130313:+:19:17516172:17517850

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000130313:+:19:17516172:17517850 ENSG00000130313 ENST00000594761 + 19 17516173 17517850 455 ACGCAUCUUCUCUCCAGACUGCCGAUCCCAGAAAGCCAGGUGAUCACCAUUAACCCCGAGCUGCCUGUGGAGGAGGCGGCUGAGGACUACGCCAAGAAGCUGAGACAGGAACUGCCCCAGGGAUCACUGGCAGAUCCCUUUGAGGAAUCCCCUCUUCGAGGCCACAGCCCUGCCCUGGGGAGCCUGAAGGCCACUCGGCCUCUGUUGCCCAGGCAUUCCAAGGGGACUCCAUCCCGGUUUUCGACCUGCUGAUCCUGGGGGUGGGCCCCGAUGGUCACACCUGCUCACUCUUCCCAGACCACCCCCUCCUACAGGAGCGGGAGAAGAUUGUGGCUCCCAUCAGUGACUCCCCGAAGCCACCGCCACAGCGUGUGACCCUCACACUACCUGUCCUGAAUGCAGCACGAACUGUCAUCUUUGUGGCAACUGGAGAAGGCAAGGCAGCUGUUCUGAAGACGCAUCUUCUCUCCAGACUGCCGAUCCCAGAAAGCCAGGUGAUCACCAU circ
ENSG00000130313:+:19:17516172:17517850 ENSG00000130313 ENST00000594761 + 19 17516173 17517850 22 CUGUUCUGAAGACGCAUCUUCU bsj
ENSG00000130313:+:19:17516172:17517850 ENSG00000130313 ENST00000594761 + 19 17515973 17516182 210 CUGGCUUCCAGCAUUCCAGAGGUGACUCACCAACCAAAGUGUCACUCACCAACCGAAGGACCUUGCACAAAUGCACCAGCCUCCCCAUGCCUCAGUCUCCCCAUCUGUAAAUGAGUGUUAUGACGGUACUGUCAUAAACUCCCUGGAGGAUCCAGGUGGUCACGUUACUGUUGGUGACAUUGUCCCUCUGUUGGCUGCAGACGCAUCUUC ie_up
ENSG00000130313:+:19:17516172:17517850 ENSG00000130313 ENST00000594761 + 19 17517841 17518050 210 UGUUCUGAAGGUAACAGCUGAGGGUUCUAGUCCUGGGAAGUUCAUGGGCAUGUGGGCCCCAGGGACAGAAAAUGGCCCCAGACAUUAUUGUGCUGAAGCAUCAGAUCUGAAGAAAACUCAGUCAUUCUUGGGUUGAAAGGUAACUUGAAAUUGCAAUUAGAAAAAAAGGAAAAAAAAAAAAAAAACCCCAGAAAAUUGCAAUUAAAGGCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.004395604 0.0002275250 4.271964 AGGGAU AGGGAU
RBM42 1 407 0.004395604 0.0005912752 2.894160 ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
MATR3 2 739 0.006593407 0.0010724109 2.620166 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SRSF11 1 688 0.004395604 0.0009985015 2.138225 AAGAAG AAGAAG
SRP14 1 847 0.004395604 0.0012289250 1.838665 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
HNRNPA3 4 2140 0.010989011 0.0031027457 1.824444 AGGAGC,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NONO 2 1498 0.006593407 0.0021723567 1.601763 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZC3H10 1 1053 0.004395604 0.0015274610 1.524926 GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
A1CF 2 1642 0.006593407 0.0023810421 1.469431 AUCAGU,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
NOVA2 6 4013 0.015384615 0.0058171047 1.403115 ACCACC,AGGCAU,AUCACC,GAGACA,GAUCAC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
PABPN1 1 1222 0.004395604 0.0017723764 1.310377 AGAAGA AAAAGA,AGAAGA
SSB 1 1260 0.004395604 0.0018274462 1.266233 GCUGUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 1 1283 0.004395604 0.0018607779 1.240156 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPA2B1 12 8607 0.028571429 0.0124747476 1.195563 AAGAAG,AAGGGG,AGAAGC,AGGAAC,AGGAGC,CAAGAA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GCCAAG,GGAGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
G3BP1 20 14282 0.046153846 0.0206989801 1.156891 ACCCCC,AGGCAG,CAGGCA,CCACAG,CCACCC,CCACCG,CCAGGC,CCAUCC,CCCAGG,CCCAUC,CCCCAG,CCCCUC,CCCUCC,CUACGC,CUCGGC,UACGCC,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
QKI 3 2805 0.008791209 0.0040664663 1.112286 ACACUA,AUUAAC,CACACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ESRP2 2 2150 0.006593407 0.0031172377 1.080756 GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
LIN28A 5 4315 0.013186813 0.0062547643 1.076069 GGAGAA,GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM3 1 20 0.09090909 0.001375426 6.046474 AAGACG AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
SRSF1 3 625 0.18181818 0.041000786 2.148773 GAAGAC,GACGCA,UGAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGHMBP2 13 350 0.033333333 0.0017684401 4.236416 AAAAAA AAAAAA
PABPC4 14 462 0.035714286 0.0023327287 3.936411 AAAAAA,AAAAAG AAAAAA,AAAAAG
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
SART3 21 777 0.052380952 0.0039197904 3.740194 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
AGO2 14 677 0.035714286 0.0034159613 3.386138 AAAAAA,AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC1 22 1321 0.054761905 0.0066606207 3.039444 AAAAAA,AAAAAC,ACAAAU,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
SYNCRIP 13 1041 0.033333333 0.0052498992 2.666604 AAAAAA AAAAAA,UUUUUU
PABPC5 7 596 0.019047619 0.0030078597 2.662801 AGAAAA,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPU 13 1136 0.033333333 0.0057285369 2.540727 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBM6 1 191 0.004761905 0.0009673519 2.299426 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM5 22 2359 0.054761905 0.0118903668 2.203379 AAAAAA,AAGGAA,AAGGUA,AGGUAA,GAAGGA,GAAGGU,GAGGGU,GGUGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPD 13 1488 0.033333333 0.0075020153 2.151615 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GGUUCU,GUUGGU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
FUS 14 1711 0.035714286 0.0086255542 2.049812 AAAAAA,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPK 20 3244 0.050000000 0.0163492543 1.612703 AAAAAA,ACCCCA,CCAACC,CCCCAU,UCCCCA AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
PCBP1 28 4891 0.069047619 0.0246473196 1.486161 AAAAAA,AACCAA,AAUUAA,ACAUUA,ACCAAA,AUUAAA,AUUCCA,CAAUUA,CAUUCC,CCAACC,CCCUCU,CCUCCC,UCCCCA AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
DAZAP1 16 2878 0.040476190 0.0145052398 1.480499 AAAAAA,AGGAAA,AGGUAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
FXR2 3 730 0.009523810 0.0036829907 1.370661 GACAGA,GGACAG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGGAA,AAGUGU,ACCAAA,AGUGUU,GAAGGA,GUAACA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ELAVL4 13 2916 0.033333333 0.0146966949 1.181474 AAAAAA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 CAACCA,CAUCUG,CCAGCA,GAUCUG,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAAC,AAACUC,AACUCA,CACUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
FMR1 23 5430 0.057142857 0.0273629585 1.062349 AAAAAA,AAGGAA,CAGCUG,CGAAGG,CUGAGG,GAAGGA,GAGGAU,GCUGAG,GGACAG,GGGCAU,UGGCUG AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAA,GGUGGU,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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