ENSG00000086189:-:5:62390875:62394607

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000086189:-:5:62390875:62394607 ENSG00000086189 ENST00000680267 - 5 62390876 62394607 2332 GUGUGCUAUACUUAUGUUUCAAAGAGAAUUUGCCCUCCGACUGGUUGCAAAACCUGGAGAUAAGUUAUACUGCAGACUCUCAAUUAAUACACAGCUGUUGGCACGUGUGGACCAUCUAAUGAAAGUGGGAAAGAAUAACUUCAGACCACCGCCCAAGGUGGAAUCCAGUGUUGUAAGGAUAGAACCUAAGAAUCCACCACCACCCAUCAAUUUUCAGGAAUGGGAUGGUCUAGUAAGGAUAACCUUUGUUAGGAAAAACAAGACACUCUCUGCUGCAUUUAAGUAAGUAUUACACUAAUUUCUAAUGUAUAAAGGGCCAGUGCUCCAGAUACUAUGCUAGAAUUUGGUCCUUUUCCUGAGCAGCUACCCUAAAGCAUAAAGAUUAUGGGUCCAGACAAACUUCACCUUUUAAACUAUCUUUAGAGCUUGGGAGGCUCUAAAGCAAACUUAAUGAAGAAAGUUUGCUGGAGUUGAGAGUCAGAUCACAUUUUUUGGCAAAACAGGAAAACACUCCCAAACUCUGACCAUAUAUCUGCUCUAGUUUUUUGUUGGAAAAAUGAGGUGAUGAUGGACCCCUUCCACACUUGUGAAGGAUAUGUGUCAUGUAAUUAACCUGGGAAAAUGCAGCUCAUCAAUUUGGGGUUCAAGGGUAAAAGAGAGGUGAGACACAGUUUUACAGGGCUUGGAGAUUUUUUUUUAGGGGAUUUUUUGUGGAGAGUCUAGAACUUCUCUAAGAAUUUAAGAGGUAUUAGGAUUUUGCACUUUAAAUAUAUUUAGUGUUUGCUUCAUAAGUUUAAAUAUUCAACAACUUUUAAAAUUCCUUAAUUUCACCAUACAGAAUAUAGAUUUAAUUUCAUCUAAAAUGAAAUUAUUGCUUAAAUGGCUUAUGUAUUAGUUAAAAAAAAGUUUAAAAAAGUAAGAAAUUACUCUGACUUUGGAAUAAUAACAGUGGCAUCACUUCUUUAUGCUAUAGAUCAAGUGCAGUGCAACAACUCUUGGAAAAAAACUACAGAAUUCACUGUUCAGUCCAUAAUAUUGUAAGUUAGAAAAUGUUCCUGCAGUUUCAUUGAUUUGUUUUCUUUUAAAAUGUCCAUUUUUAUUCUUGUUGAUCUAGCAUGAGAUUAUUUUGUACAUUCCAUAAGAUCCUUAAAAGACAAUAUAUAAUGUAUAACUAGCACAAUUUUGACUUGAAUUCUGACAGGUCAGUGCUGCUGUGUAUCCUGUGAAACAGAUAUGAGCAACUUUGAUUACUCCACCCUGUCCUCUAACUACUGACAGUUGUUUUUAGCCAUAACAAGAAUCAGAUUCAGCAGUUACAGGUUCCUCAAAGCUGUAGAUAUGUGUAGCUUGCACAACUUAAAAUAAUUGUGUAGUUUACUGUCCUCUGAAUUGUGACCACGUCUUGUUUCUUGCUCACAUAGCAGUUACAAAUAUAGUUAUUACUUUCUUUGUAUAGAAAUUGAAAUAAAGUUCAUAUGGCUCAAUAGCAGAUUUCUGGUUGUGAGCCUCAUGCGUAUCAUUUGUGUAACAGUGUGUGCGAUGUGAUGUUUGCUAUCUUUUUAGCUUCCAGUUUAAUUAGAACAGAGAGAGAAAGGCCAAUUUUCUUUUUAUUUUUUAUGACUCAGAACCUAUAUGGUUUAAUGUAUCACAAUACUAUCUCCAUUUUCUCUUUUAUGGGCAAAAAGUCAUUAGAUAAUCUGCCUAAGUAUAAUAGAAAAAUAUUAAGCUAGAUUAAGAAAAAUAUUUGGAUAAAAUAUGUGAAUUAAGUGUAAAAUCCUUUUGGAUAAAAUAUGUGAAUUAAGUGUAAAAUCCUUAAUAUUCCCAAGGCUUGGGCAGGUCACCUCUUUGAGAAAAAUGAGGUGGUUAAGGUCAAAUCUGUAGGAAGAAAAUGCAUUAUUUUGAAAGGAGUAACAAUUGCUUUAAAAUUUAAUUUACAGUUGUAAUUAUUUGUGAAGUCUGAAACUAAUAACUAUUUCAGAAUUUUAAAGAAGAAAAUGGCUAAUAUAGACAGGAUUACUAAUUCAAGGUAUUCCAAGUUUUUGUUAAUAAAGAUCAGCCACUUUUAAUUAGAGAUCCAAGUCUUAAUGUAAAAAUCAGGCUUUCCAAAGUCUCAUUAACAGAUAUAUUAAAGGUGACUAUUUUAUGACUUACUGAACUAAAAAAAAGAGUCAAGGUGACCUCAUUAAAGAUAUGUCGUUCAUUUAUUCUGAAUCUUAUAUUGAUAGAUAAUACCAGAAGAUUUCAGCAUAGCAGAUAAAAUACAGCAAAUCCUAACCAGCACAGGUUUUAGUGACAAACGGGCCCGUUCCAUGGACAUAGAUGACUUCAUCAGGUGUGCUAUACUUAUGUUUCAAAGAGAAUUUGCCCUCCGACUGGUUGCAA circ
ENSG00000086189:-:5:62390875:62394607 ENSG00000086189 ENST00000680267 - 5 62390876 62394607 22 GACUUCAUCAGGUGUGCUAUAC bsj
ENSG00000086189:-:5:62390875:62394607 ENSG00000086189 ENST00000680267 - 5 62394598 62394807 210 CCAUGAGGAGUACAGCAAUUAUAAAAACAAAGCCAGCUCUCUCAUUCUGUGGCAAUAAAAAAAAGGCUGAAUGUGUUCUCCUACCUUAUAAUCAGCUGCCAAUGCUUUGCUAUUUCUCUCCCAAGAAAAUUCAUUGCAGUUAAAAUUCAUUUAUAGUUGACAAUGACCAUUUUCCUUAUUCCUUUCUGCUUUCUUUUCAGGUGUGCUAUA ie_up
ENSG00000086189:-:5:62390875:62394607 ENSG00000086189 ENST00000680267 - 5 62390676 62390885 210 ACUUCAUCAGGUAAUUACAUUUUUGUUUUCCUAAGUGUUUACAUUUCUUUACUGUGACACCUUCAGAUUGGAGAUUUUAAAGGCUUUUAAGCGGUAUAAGGUGCUACCUGGGAGAGUUAUUGCAUAGCACUUCCAUGGCAUGGAAUAGUAUUUGGUGUAGAAGAUGGAGGCUAGUUAGCUGCAGCAGAAUGAACAUUUUCUUUAAGAACA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.0008576329 0.0001130379 2.923554 GCAUAA GCAUAA
HNRNPA0 7 453 0.0034305317 0.0006579386 2.382407 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS3 21 1283 0.0094339623 0.0018607779 2.341958 AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZCRB1 23 1605 0.0102915952 0.0023274215 2.144662 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AKAP1 5 426 0.0025728988 0.0006188101 2.055826 AUAUAU,UAUAUA AUAUAU,UAUAUA
IGHMBP2 9 813 0.0042881647 0.0011796520 1.861999 AAAAAA AAAAAA
RBM42 4 407 0.0021440823 0.0005912752 1.858459 AACUAA,AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBMS1 5 497 0.0025728988 0.0007217036 1.833916 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PPIE 205 18315 0.0883361921 0.0265436196 1.734640 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PABPC4 13 1251 0.0060034305 0.0018144033 1.726292 AAAAAA,AAAAAG AAAAAA,AAAAAG
SYNCRIP 17 1634 0.0077186964 0.0023694485 1.703806 AAAAAA,UUUUUU AAAAAA,UUUUUU
CPEB4 8 821 0.0038593482 0.0011912456 1.695886 UUUUUU UUUUUU
DDX19B 8 821 0.0038593482 0.0011912456 1.695886 UUUUUU UUUUUU
EIF4A3 8 821 0.0038593482 0.0011912456 1.695886 UUUUUU UUUUUU
HNRNPD 30 2837 0.0132933105 0.0041128408 1.692493 AAAAAA,AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
NXF1 2 286 0.0012864494 0.0004159215 1.629011 AACCUG AACCUG
PUM1 59 5823 0.0257289880 0.0084401638 1.608052 AAUAUU,AAUGUU,AAUUGU,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,GAAUUG,GUACAU,GUAGAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SUPV3L1 1 199 0.0008576329 0.0002898408 1.565100 CCGCCC CCGCCC
ELAVL4 50 5105 0.0218696398 0.0073996354 1.563403 AAAAAA,AUCUAA,AUUUAU,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL2 181 18468 0.0780445969 0.0267653478 1.543932 AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 21 2261 0.0094339623 0.0032780993 1.525004 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 19 2062 0.0085763293 0.0029897078 1.520356 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SART3 24 2634 0.0107204117 0.0038186524 1.489225 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ERI1 5 632 0.0025728988 0.0009173461 1.487857 UUCAGA,UUUCAG UUCAGA,UUUCAG
KHDRBS3 31 3429 0.0137221269 0.0049707696 1.464963 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAG,AUUAAA,GAUAAA,UAAAUA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
TIAL1 93 10182 0.0403087479 0.0147572438 1.449670 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 17 1965 0.0077186964 0.0028491350 1.437833 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS2 16 1858 0.0072898799 0.0026940701 1.436108 AAUAAA,AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
KHDRBS1 36 4064 0.0158662093 0.0058910141 1.429370 AUAAAA,AUUUAA,AUUUAC,CUAAAA,GAAAAC,UAAAAA,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
PUM2 16 1890 0.0072898799 0.0027404447 1.411485 GUACAU,GUAGAU,UAAAUA,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
TUT1 5 678 0.0025728988 0.0009840095 1.386651 AAAUAC,AAUACU,AGAUAC,CAAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
A1CF 13 1642 0.0060034305 0.0023810421 1.334194 AGUAUA,AUAAUU,GAUCAG,UAAUUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
DAZAP1 49 5964 0.0214408233 0.0086445016 1.310506 AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGUAAG,AGUAUA,AGUUAA,AGUUAG,AGUUUA,AGUUUG,UAGGAA,UAGGAU,UAGUAA,UAGUUA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL3 23 2867 0.0102915952 0.0041563169 1.308089 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RALY 12 1553 0.0055746141 0.0022520629 1.307625 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
PABPC5 19 2400 0.0085763293 0.0034795387 1.301464 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC1 36 4443 0.0158662093 0.0064402624 1.300766 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACUAAU,AGAAAA,CAAAUA,CAAAUC,CUAACC,CUAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AGO2 14 1830 0.0064322470 0.0026534924 1.277430 AAAAAA,AAAGUG,AAGUGC,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBMY1A1 3 489 0.0017152659 0.0007101099 1.272318 ACAAGA,CAAGAC ACAAGA,CAAGAC
ELAVL1 44 5554 0.0192967410 0.0080503280 1.261238 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
TIA1 72 9206 0.0313036021 0.0133428208 1.230265 AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36L2 9 1277 0.0042881647 0.0018520827 1.211212 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPC 26 3471 0.0115780446 0.0050316361 1.202292 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PTBP2 1 267 0.0008576329 0.0003883867 1.142867 CUCUCU CUCUCU
CELF2 13 1886 0.0060034305 0.0027346479 1.134432 AUGUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
G3BP2 11 1644 0.0051457976 0.0023839405 1.110046 AGGAUA,AGGAUU,GGAUAA,GGAUAG,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 5 822 0.0025728988 0.0011926949 1.109170 GUGUAG,UGUAGA,UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
AGO1 3 548 0.0017152659 0.0007956130 1.108294 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
U2AF2 9 1477 0.0042881647 0.0021419234 1.001453 UUUUCC,UUUUUU UUUUCC,UUUUUC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF4 1 4 0.09090909 0.0003274823 8.116864 GGUGUG GGUGUG,GUGUUG,UGUGUG
SRSF1 1 625 0.09090909 0.0410007860 1.148773 UCAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPB2 5 288 0.014285714 0.0014560661 3.294425 AUUGCA,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
IGHMBP2 3 350 0.009523810 0.0017684401 2.429061 AAAAAA AAAAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
PABPC4 4 462 0.011904762 0.0023327287 2.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM41 4 502 0.011904762 0.0025342604 2.231902 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA,AAAAAC,AGAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
LIN28A 5 900 0.014285714 0.0045395002 1.653968 AGGAGU,GGAGAU,GGAGUA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,AAAACA,AAAUUC,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA,AAAAAC,AGAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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