circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000189091:+:16:70532478:70569141
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000189091:+:16:70532478:70569141 | ENSG00000189091 | ENST00000302516 | + | 16 | 70532479 | 70569141 | 2694 | GAAGCAGACAAUGAUCCAACAGGGGAAGCAGCAGCUAAUACCCAGCAGACACUUACUUUCUAUGAGCUAGACCUUGGUUUAAAUCAUGUGGUCCGAAAAUACAGUGAACCUUUGGAGGAACACGGCAACUUCCUUAUUACAGUUCCAGGAGGGUCAGAUGGUCCAAGUGGAGUACUGAUCUGCUCUGAAAACUAUAUUACUUACAAGAACUUUGGUGACCAGCCAGAUAUCCGCUGUCCAAUUCCCAGGAGGCGGAAUGACCUGGAUGACCCUGAAAGAGGAAUGAUUUUUGUCUGCUCUGCAACCCAUAAAACCAAAUCGAUGUUCUUCUUUUUGGCUCAAACUGAGCAGGGAGAUAUCUUUAAGAUCACUUUGGAGACAGAUGAAGAUAUGGUUACUGAGAUCCGGCUCAAAUAUUUUGAUACUGUACCCGUUGCUGCUGCCAUGUGUGUGCUUAAAACAGGGUUCCUUUUUGUAGCAUCAGAAUUUGGAAACCAUUACUUAUAUCAAAUUGCACAUCUUGGAGAUGAUGAUGAAGAACCUGAGUUUUCAUCAGCCAUGCCUCUGGAAGAAGGAGACACAUUCUUUUUUCAGCCAAGACCACUUAAAAACCUUGUGCUGGUUGAUGAGUUGGACAGCCUCUCUCCCAUUCUGUUUUGCCAGAUAGCUGAUCUGGCCAAUGAAGAUACUCCACAGUUGUAUGUGGCCUGUGGUAGGGGACCCCGAUCAUCUCUGAGAGUCCUAAGACAUGGACUUGAGGUGUCAGAAAUGGCUGUUUCUGAGCUACCUGGUAACCCCAACGCUGUCUGGACAGUGCGUCGACACAUUGAAGAUGAGUUUGAUGCCUACAUCAUUGUGUCUUUCGUGAAUGCCACCCUAGUGUUGUCCAUUGGAGAAACUGUAGAAGAAGUGACUGACUCUGGGUUCCUGGGGACCACCCCGACCUUGUCCUGCUCCUUAUUAGGAGAUGAUGCCUUGGUGCAGGUCUAUCCAGAUGGCAUUCGGCACAUACGAGCAGACAAGAGAGUCAAUGAGUGGAAGACCCCUGGAAAGAAAACAAUUGUGAAGUGUGCAGUGAACCAGCGACAAGUGGUGAUUGCCCUGACAGGAGGAGAGCUGGUCUAUUUCGAGAUGGAUCCUUCAGGACAGCUGAAUGAGUACACAGAACGGAAGGAGAUGUCAGCAGAUGUGGUGUGCAUGAGUCUGGCCAAUGUACCCCCUGGAGAGCAGCGGUCUCGCUUCCUGGCUGUGGGGCUUGUGGACAACACUGUCAGAAUCAUCUCCCUGGAUCCCUCAGACUGUUUGCAACCUCUAAGCAUGCAGGCUCUCCCAGCCCAGCCUGAGUCCUUGUGUAUCGUGGAAAUGGGUGGGACUGAGAAGCAGGAUGAGCUGGGUGAGAGGGGCUCGAUUGGCUUCCUAUACCUGAAUAUUGGGCUACAGAACGGUGUGCUGCUGAGGACUGUCUUGGACCCUGUCACUGGGGAUUUGUCUGAUACUCGCACUCGGUACCUGGGGUCCCGUCCUGUGAAGCUCUUCCGAGUCCGAAUGCAAGGCCAGGAGGCAGUAUUGGCCAUGUCAAGCCGCUCAUGGUUGAGCUAUUCUUACCAAUCUCGCUUCCAUCUCACCCCACUGUCUUACGAGACACUGGAAUUUGCAUCGGGUUUUGCCUCGGAACAGUGUCCCGAGGGCAUUGUGGCCAUCUCCACCAACACCCUACGGAUUUUGGCAUUAGAGAAGCUCGGUGCUGUCUUCAAUCAAGUAGCCUUCCCACUGCAGUACACACCCAGGAAAUUUGUCAUCCACCCUGAGAGUAACAACCUUAUUAUCAUUGAAACGGACCACAAUGCCUACACUGAGGCCACGAAAGCUCAGAGAAAGCAGCAGAUGGCAGAGGAAAUGGUGGAAGCAGCAGGGGAGGAUGAGCGGGAGCUGGCCGCAGAGAUGGCAGCAGCAUUCCUCAAUGAAAACCUCCCUGAAUCCAUCUUUGGAGCUCCCAAGGCUGGCAAUGGGCAGUGGGCCUCUGUGAUCCGAGUGAUGAAUCCCAUUCAAGGGAACACACUGGACCUUGUCCAGCUGGAACAGAAUGAGGCAGCUUUUAGUGUGGCUGUGUGCAGGUUUUCCAACACUGGUGAAGACUGGUAUGUGCUGGUGGGUGUGGCCAAGGACCUGAUACUAAACCCCCGAUCUGUGGCAGGGGGCUUCGUCUAUACUUACAAGCUUGUGAACAAUGGGGAAAAACUGGAGUUUUUGCACAAGACUCCUGUGGAAGAGGUCCCUGCUGCUAUUGCCCCAUUCCAGGGGAGGGUGUUGAUUGGUGUGGGGAAGCUGUUGCGUGUCUAUGACCUGGGAAAGAAGAAGUUACUCCGAAAAUGUGAGAAUAAGCAUAUUGCCAAUUAUAUCUCUGGGAUCCAGACUAUCGGACAUAGGGUAAUUGUAUCUGAUGUCCAAGAAAGUUUCAUCUGGGUUCGCUACAAGCGUAAUGAAAACCAGCUUAUCAUCUUUGCUGAUGAUACCUACCCCCGAUGGGUCACUACAGCCAGCCUCCUGGACUAUGACACUGUGGCUGGGGCAGACAAGUUUGGCAACAUAUGUGUGGUGAGGCUCCCACCUAACACCAAUGAUGAAGUAGAUGAGGAUCCUACAGGAAACAAAGCCCUGUGGGACCGUGGCUUGCUCAAUGGGGCCUCCCAGAAGGAAGCAGACAAUGAUCCAACAGGGGAAGCAGCAGCUAAUACCCAGCAGAC | circ |
| ENSG00000189091:+:16:70532478:70569141 | ENSG00000189091 | ENST00000302516 | + | 16 | 70532479 | 70569141 | 22 | CCUCCCAGAAGGAAGCAGACAA | bsj |
| ENSG00000189091:+:16:70532478:70569141 | ENSG00000189091 | ENST00000302516 | + | 16 | 70532279 | 70532488 | 210 | AAACUCCGUCUCAAAAAAAAAAAAAGAUCAUACCUCUGUGCACUGCAGCCUGGGUGACAUAGUGAGAACCUGUCUCUCCAAAAAAAAAAGAAGACAUUUGUGGACUUCUGUUUCCUCAUUUGUAAAUUGGAGUCCUGAUGUCCUUUCCAGAUCUUCGAUUUUAUGCUGAUGAUUAGUUUUUAUGCCACUAUUCUCUGUAGGAAGCAGACA | ie_up |
| ENSG00000189091:+:16:70532478:70569141 | ENSG00000189091 | ENST00000302516 | + | 16 | 70569132 | 70569341 | 210 | CUCCCAGAAGGUAAGAUUGCAGAAUGGGCCCCAGGGAGAACACUGCUUAGCACUUUUCCUGUUGCCCUCACUGAAGAAAUUGCCUUUGGUGAAUUAUUCAUAGUGCACACGACUGUGCUGAGUGCUGUCCGUCCACAGUCCUUUCUUACCAAUCUGCAAAAAAUCUCCUUGGAGAGUAGCGAGUUUCUUAGAGAGAGUCCAUUCCCAGUC | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPA1L2 | 3 | 314 | 0.001484781 | 0.0004564992 | 1.701566 | AUAGGG,GUAGGG,UAGGGU | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| RBMY1A1 | 5 | 489 | 0.002227171 | 0.0007101099 | 1.649098 | ACAAGA,CAAGAC | ACAAGA,CAAGAC |
| PABPC3 | 12 | 1234 | 0.004825538 | 0.0017897669 | 1.430918 | AAAAAC,AAAACA,AAAACC,GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| TUT1 | 6 | 678 | 0.002598367 | 0.0009840095 | 1.400861 | AAAUAC,AGAUAC,GAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| CELF4 | 16 | 1782 | 0.006310319 | 0.0025839306 | 1.288146 | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,UGUGUG | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| CELF6 | 26 | 2997 | 0.010022272 | 0.0043447134 | 1.205877 | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| HNRNPA0 | 3 | 453 | 0.001484781 | 0.0006579386 | 1.174225 | AGAUAU | AAUUUA,AGAUAU,AGUAGG |
| CELF2 | 15 | 1886 | 0.005939124 | 0.0027346479 | 1.118895 | AUGUGU,GUAUGU,GUGUGU,UAUGUG,UGUGUG,UGUUGU,UUGUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| CELF5 | 11 | 1415 | 0.004454343 | 0.0020520728 | 1.118131 | GUGUGG,GUGUGU,GUGUUG,UGUGUG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| EIF4B | 9 | 1179 | 0.003711952 | 0.0017100607 | 1.118131 | CUCGGA,CUUGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| RBM46 | 36 | 4554 | 0.013734224 | 0.0066011240 | 1.056992 | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| CELF1 | 18 | 2391 | 0.007052710 | 0.0034664959 | 1.024700 | CUGUCU,GUGUGU,GUGUUG,UGUCUG,UGUGUG,UGUUGU,UGUUUG,UUGUGU | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPM | 2 | 5 | 0.13636364 | 0.0003929788 | 8.438792 | AAGGAA,GAAGGA | AAGGAA,GAAGGA |
| RBMX | 4 | 34 | 0.22727273 | 0.0022923762 | 6.631437 | AAGGAA,AGAAGG,AGGAAG,GAAGGA | AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA |
| SRSF4 | 1 | 18 | 0.09090909 | 0.0012444328 | 6.190864 | AGGAAG | AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| TRA2B | 4 | 51 | 0.22727273 | 0.0034058161 | 6.060280 | AAGGAA,AGAAGG,AGGAAG,GAAGGA | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| MSI1 | 1 | 23 | 0.09090909 | 0.0015719151 | 5.853829 | AGGAAG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG |
| HNRNPA2B1 | 2 | 49 | 0.13636364 | 0.0032748232 | 5.379898 | AAGGAA,GAAGGA | AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG |
| DAZAP1 | 1 | 36 | 0.09090909 | 0.0024233691 | 5.229338 | AGGAAG | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA |
| RBM5 | 2 | 56 | 0.13636364 | 0.0037332984 | 5.190864 | AAGGAA,GAAGGA | AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU |
| SRSF5 | 1 | 44 | 0.09090909 | 0.0029473408 | 4.946939 | AGGAAG | AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC |
| TRA2A | 1 | 54 | 0.09090909 | 0.0036023055 | 4.657432 | AGGAAG | AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| FMR1 | 3 | 117 | 0.18181818 | 0.0077285827 | 4.556149 | AAGGAA,AGGAAG,GAAGGA | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| SRSF6 | 1 | 68 | 0.09090909 | 0.0045192560 | 4.330267 | AGGAAG | AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG |
| SRSF9 | 2 | 134 | 0.13636364 | 0.0088420225 | 3.946939 | GAAGGA,GGAAGC | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| HNRNPF | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | AGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | AGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| SFPQ | 2 | 153 | 0.13636364 | 0.0100864553 | 3.756968 | AAGGAA,GAAGGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.0078595756 | 3.531901 | AGGAAG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| ZFP36 | 1 | 126 | 0.09090909 | 0.0083180508 | 3.450107 | AAGGAA | AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG |
| SRSF7 | 1 | 128 | 0.09090909 | 0.0084490438 | 3.427565 | AGGAAG | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF10 | 1 | 160 | 0.09090909 | 0.0105449306 | 3.107875 | AAGGAA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF1 | 3 | 625 | 0.18181818 | 0.0410007860 | 2.148773 | AGAAGG,AGGAAG,GAAGGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.0314383023 | 1.531901 | AGGAAG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| NXF1 | 1 | 43 | 0.004761905 | 0.0002216848 | 4.424957 | AACCUG | AACCUG |
| IGHMBP2 | 14 | 350 | 0.035714286 | 0.0017684401 | 4.335952 | AAAAAA | AAAAAA |
| PABPC4 | 16 | 462 | 0.040476190 | 0.0023327287 | 4.116983 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| SRSF11 | 1 | 82 | 0.004761905 | 0.0004181782 | 3.509349 | AAGAAG | AAGAAG |
| AGO2 | 15 | 677 | 0.038095238 | 0.0034159613 | 3.479247 | AAAAAA,AGUGCU | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| PABPN1 | 3 | 178 | 0.009523810 | 0.0009018541 | 3.400573 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| SART3 | 14 | 777 | 0.035714286 | 0.0039197904 | 3.187653 | AAAAAA | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| SYNCRIP | 14 | 1041 | 0.035714286 | 0.0052498992 | 2.766140 | AAAAAA | AAAAAA,UUUUUU |
| HNRNPU | 14 | 1136 | 0.035714286 | 0.0057285369 | 2.640263 | AAAAAA | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| PABPC1 | 14 | 1321 | 0.035714286 | 0.0066606207 | 2.422773 | AAAAAA | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| HNRNPD | 15 | 1488 | 0.038095238 | 0.0075020153 | 2.344261 | AAAAAA,UUAGAG | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| SNRPB2 | 2 | 288 | 0.007142857 | 0.0014560661 | 2.294425 | AUUGCA,UUGCAG | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| FUS | 16 | 1711 | 0.040476190 | 0.0086255542 | 2.230384 | AAAAAA,GGGUGA,UGGUGA | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| SRP14 | 1 | 218 | 0.004761905 | 0.0011033857 | 2.109602 | CUGUAG | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| SRSF4 | 4 | 558 | 0.011904762 | 0.0028164047 | 2.079612 | AAGAAG,AGAAGA,AGGAAG,GAAGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| EIF4B | 1 | 226 | 0.004761905 | 0.0011436921 | 2.057840 | CUUGGA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| RBM28 | 2 | 340 | 0.007142857 | 0.0017180572 | 2.055723 | GAGUAG,UGUAGG | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| RBM5 | 19 | 2359 | 0.047619048 | 0.0118903668 | 2.001746 | AAAAAA,AAGGUA,AGGGAG,AGGUAA,GAAGGU,UUCUCU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| HNRNPLL | 4 | 748 | 0.011904762 | 0.0037736800 | 1.657495 | ACUGCA,CACUGC,GCACAC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| DAZAP1 | 18 | 2878 | 0.045238095 | 0.0145052398 | 1.640964 | AAAAAA,AGGAAG,AGGUAA,UAGGAA,UAGUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| ELAVL4 | 18 | 2916 | 0.045238095 | 0.0146966949 | 1.622046 | AAAAAA,UUUGUA,UUUUAU,UUUUUA | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| RC3H1 | 3 | 631 | 0.009523810 | 0.0031841999 | 1.580608 | CUUCUG,UCUGUG,UUCUGU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| TRA2A | 6 | 1133 | 0.016666667 | 0.0057134220 | 1.544539 | AAAGAA,AAGAAA,AAGAAG,AGAAGA,AGGAAG,GAAGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SSB | 2 | 505 | 0.007142857 | 0.0025493753 | 1.486358 | CUGUUU,UGCUGU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| HNRNPAB | 1 | 351 | 0.004761905 | 0.0017734784 | 1.424957 | AAGACA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| TRA2B | 7 | 1447 | 0.019047619 | 0.0072954454 | 1.384543 | AAAGAA,AAGAAG,AGAAGA,AGAAGG,AGGAAG,GAAGAA,GAAUUA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| SNRPA | 9 | 1947 | 0.023809524 | 0.0098145909 | 1.278539 | AUACCU,AUGCUG,AUUGCA,GUUUCC,UAUGCU,UGCACA,UUCCUG,UUUCCU | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| PCBP1 | 24 | 4891 | 0.059523810 | 0.0246473196 | 1.272036 | AAAAAA,AUUCCC,CAUACC,CAUUCC,CCAAUC,CCAUUC,CCUUUC,CUUACC,CUUUCC,UUAGAG | AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| PABPC5 | 2 | 596 | 0.007142857 | 0.0030078597 | 1.247764 | AGAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| HNRNPK | 15 | 3244 | 0.038095238 | 0.0163492543 | 1.220386 | AAAAAA,CAUACC | AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU |
| RBM46 | 4 | 1091 | 0.011904762 | 0.0055018138 | 1.113560 | AUCAUA,AUGAUU,GAUCAU,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| LIN28A | 3 | 900 | 0.009523810 | 0.0045395002 | 1.069005 | GGAGAA,UGGAGA,UGGAGU | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| SRSF5 | 6 | 1578 | 0.016666667 | 0.0079554615 | 1.066948 | AAGAAG,AGAAGA,AGGAAG,GAAGAA,UGCAGA,UGCAGC | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.